KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:27:10 2014 Check: 00 .. Name: ENSP00000328487/1-849 Len: 885 Check: 8341 Weight: 1.00 Name: ENSBTAP00000005681/1-857 Len: 885 Check: 3169 Weight: 1.00 Name: bmy_07807T0/1-859 Len: 885 Check: 4554 Weight: 1.00 Name: BACU003518/1-881 Len: 885 Check: 1361 Weight: 1.00 // 1 50 ENSP00000328487/1-849 MMEPPKPEPE LQRFYHRLLR PLSLFPTRTT SPEPQKRPPQ EGRILQSFPL ENSBTAP00000005681/1-857 -MEPYKLDPE FQRIYHRLLR PLSLFPRRTT RTASQEHLSQ EVPMLLPLPV bmy_07807T0/1-859 -MEPYKPEPE FQRFYHRLLR PLSLFPRTTT RTESQKRLPQ EVPMLPSLPV BACU003518/1-881 -MEPYKPEPE LQRFYHRLLR PLSLFARTTT RTESQKRLPQ EVPMLLPLPV 51 100 ENSP00000328487/1-849 AKLTVASLCS QVAKLLAGSG IAAGVPPEAR LRLIKVILDE LKCSWREPPA ENSBTAP00000005681/1-857 PRLTAELVCR QVAERLTKSG LEARAPHKVR LRFTEVILDE LKCGWQEPPT bmy_07807T0/1-859 SRLTVASLCR RVAERLANSG LEARAPRKVR LRFTEVILDE LKCSWQEPPT BACU003518/1-881 SRLTVASLCR QVAERLANSG LEARAPRKVR LRFTEVILDE LKCSWQEPPT 101 150 ENSP00000328487/1-849 ELSLSHKNNQ KLRKRLEAYV LLSSEQLFLR YLHLLVTMST PRGVFTESAT ENSBTAP00000005681/1-857 ELGMSHLNNQ RLRKRLLIYV LLSCEQLFVR YLHLQKLMST SAVVFTESAT bmy_07807T0/1-859 EPGLSHLNNR RLRKRLLVYV LLSSEQLFVR YLHLQKIMST PAAVFTESAT BACU003518/1-881 EPGLSHLNNQ RLRKRLLVYV LLSSEQLFVR YLHLQKIMST PAAVFTESAT 151 200 ENSP00000328487/1-849 LTRLAASLAR DCTLFLTSPN VYRGLLADFQ ALLRAEQASG DVDKLHPVCP ENSBTAP00000005681/1-857 LTRLAASLAR DCTVFLTGPD VYRSLLSDFL ALLKEEQARV SAPRLRAAG- bmy_07807T0/1-859 LTRLAASLAR DCTVFLTGPE VYRGLLADFC ALLKEGQVQV CVPRVRPLGP BACU003518/1-881 LTRLAASLAR DCTVFLTGPE VYRGLLADFR ALLKEGQVQV CVPRVRPLGP 201 250 ENSP00000328487/1-849 AGTFKLCPIP WPHSTGFAQV QCSNLNLNYL IQLSRPPEFL NEPGRMDPVK ENSBTAP00000005681/1-857 LGAYRLFQVP WHHITGVTQV PHFNLSLNYL IQLSRPRDLV SEPEK-DPMK bmy_07807T0/1-859 TGAFRLCPIP WHHSTGFAQV PYFNLSLNYL IQLSRPREFV SEPEP-DPVK BACU003518/1-881 TGAFRLCPIP WHHSTGFAQV PYFNLSLNYL IQLSRPREFV SEPEP-DPVK 251 300 ENSP00000328487/1-849 ELKSIPRLKR KKPFHWLPSI GKKREIDISS SQMVSLPSYP VAPTSRASPS ENSBTAP00000005681/1-857 ELKSIPQLKK KKPLRWLSSM QKRRESTF-T SQIASLSGTS VAPRSRAPPT bmy_07807T0/1-859 ELKSIPQLKK RKPLCWLSTM QKRRESNF-N SQIASLPGSS VAPPSQAPPT BACU003518/1-881 ELKSIPQLKK KKPLRWLSTM QKRRESNF-N SQIASLPGSS VAPPSQAPPT 301 350 ENSP00000328487/1-849 ---PFCPELR RGQSMPSLRE GWRLADELGL PPLPSRPLTP LVLATESKPE ENSBTAP00000005681/1-857 SHLPLYSQLQ RGQSMPSLRE GWRLADELGL PPLSPRPLTP LVLVAESKPE bmy_07807T0/1-859 SHLPLSSQLQ RGQSMPSLRE GWKLADELGL PPLSPRPLTP LVLLAESKPE BACU003518/1-881 SHLPLSSQLQ RGQSMPSLRE GWKLADELGL PPFSPRPLTP LVLVAESKPE 351 400 ENSP00000328487/1-849 LTGLIVAEDL KQLIKKMKLE GTRYPPLDSG LPPLLGVVTR HPAAGHRLEE ENSBTAP00000005681/1-857 LARDTVAEDL KQMMKHMQLG WSQYSPLDSG LPPLLGALTY RPATTHHLEE bmy_07807T0/1-859 LEGDTVAEDL KQRMKNMQLG WSHYSPLDSG LPPLLGALTY RPAATHHMEE BACU003518/1-881 LEGDTVAEDL KQRMKNMHLG WSHYSPLDSG LPPLLGALTY RPAAKHHMEE 401 450 ENSP00000328487/1-849 LEKMLRNLQE EEASGQWDPQ PPKSFPLHPQ PVTITLKLRN EVVVQAAAVR ENSBTAP00000005681/1-857 LQRKLNSLEE QEASEHRGLQ SPKPPPLEPQ PVTVTLKLKN Q-MVQIAAVQ bmy_07807T0/1-859 LQRMLKGLEE KEASEQWSLQ SPRSPPLEPQ PVTVTLKLRN Q-VVQAAAVQ BACU003518/1-881 LQRMLKGLEE KEASEQWSLQ PPRCPPLEPQ PVTVTLKLRN Q-VVQAAAVQ 451 500 ENSP00000328487/1-849 VSDRNFLDSF HIEGAGALYN HLAGELDPKA IEKMDIDNFV GSTTREVYKE ENSBTAP00000005681/1-857 VSGRNFLDSF HIEPAGVLYN HLAGELEPKL IEQMDIDRTF GSSIREVYKE bmy_07807T0/1-859 VSARNFLDSF HVEGAGVLYN HLAGELEPKL MEEMDTDRTF GSSIREVYKE BACU003518/1-881 VSARNFLDSF HVEGAGVLYN HLAGELEPKL IEEMDTDRTF GSSIGEVYKE 501 550 ENSP00000328487/1-849 LMSHVSSDHL HFDQGPLVEP AADKDWSTFL SSAFLRQEKQ PQIINPELVG ENSBTAP00000005681/1-857 LMSRVSNNHF TFDQGPLVEP AANKDWSAFL SSAFLRQEKQ HRIINTKLAE bmy_07807T0/1-859 LMSRVSNDHF SFDQGPLVEP AANKDWSAFL SSAFLRQEKQ RRIINTKLAG BACU003518/1-881 LMSCVSNDHF SFDQGPLVEP AANEDWSAFL SSAFLCQEKQ RRNINTKLAG 551 600 ENSP00000328487/1-849 LYSQRANTLQ SNTKKMPSLP SLQATKSWEK WSNKASLMNS WKTTLSVDDY ENSBTAP00000005681/1-857 LYPQKSSTLQ SNADKISSFT SLQASKSWDR WSNRARWLNW WKSTLSVGDY bmy_07807T0/1-859 LYXQRANTLQ SNPDKMSSLT SLQASKSWEK WSNKASWLNW WKTTLSVGDY BACU003518/1-881 LYSQRANTLQ SNPDKMSSLT SLQASKSWEK WSNKASWLNW WKTTLSVGDY 601 650 ENSP00000328487/1-849 FKYLTNHETD FLHVIFQMHE EEVPVEIVAP ARESLEIQHP PPLLEDEEPD ENSBTAP00000005681/1-857 FKYLTTQETD FLHVIFQMYE EEGPVETVAP IKESIKIQHP PPLLEDDEPD bmy_07807T0/1-859 FKYLTTQQTD FLHVIFQMYE EEVPVEIVAP VRESLKIQHP PPLLEDDEPE BACU003518/1-881 FKYLTTQQTD FLHVIFQMYE EEVPVEIVAP VRESLKIQHP PPLLEDNEPD 651 700 ENSP00000328487/1-849 FVPGEWDWNT VLEHRLGAGK TPHLGEPHKI LSLQKHLEQL WSVLEVPDKD ENSBTAP00000005681/1-857 FVPGEWDWDT VLEHRLET-K SSLLEDSHKI LSLQKRLERV WSMLDVPEKD bmy_07807T0/1-859 FVPGEWDWDT VLERRLGTKN NSLLEDSHKI LSLQKRLERL WSMLEVPDKD BACU003518/1-881 FVPGEWDWDT VLECRLGTKN NSLLEDSHKI LSLQKRLERL WSMLEVPDKD 701 750 ENSP00000328487/1-849 QVDMTIKYSS KARLRQLPSL VNAWERALKP IQLREALLAR LEWFEGQASN ENSBTAP00000005681/1-857 RLDMAIKYSS NARLRQLPAL VSAWERALQP IQLREILLGR LEWFERQASD bmy_07807T0/1-859 RLDMAIKYSS NARLRQLPSL VSAWERALQP IQLREILLGR LECFERQASD BACU003518/1-881 RLDMAIKYSS NARLRQLPSL VSAWEWALQP IQLREILLGR LECFEQQASD 751 800 ENSP00000328487/1-849 PNRFFKKTNL SSSHFLEENQ VRSHLHRKLN LMESSLVSLL EEIELIFGEP ENSBTAP00000005681/1-857 PNRFFQKTDV GLSRFLEENQ IRGRLQRKLS MVEAPLVPLL EEIELVFGEP bmy_07807T0/1-859 PNRFFHKTDM GLSRFLEENQ IRNHLHKRLS LVEAPLVPLL EEIELVFGEP BACU003518/1-881 PNRFFHKTDM GLSRFLEENQ IRNHLHKRLS LVEAPLVPLL EEIELVFGEP 801 850 ENSP00000328487/1-849 VIFKGRPYLD KMKSDKVEML YWLQQQRRVR HLVSALKDPH QSTLFR---- ENSBTAP00000005681/1-857 VTFKGRRYLD KMKHDKVEML YWLQQQRRVR HLTRAKRASH QSVLSRKLSS bmy_07807T0/1-859 VTFKGRRYLD KMKHDKVEML YWLQQRRRVR HLVRAKRASH QSALSRKLSS BACU003518/1-881 VTFKGQHYLD KMKHDKVEML YWLQQRRRVR HLVRAKRASH QSALSRKLSS 851 900 ENSP00000328487/1-849 -------SSA ASL------- ---------- ----- ENSBTAP00000005681/1-857 QPLVAPGNTP ITL------- ---------- ----- bmy_07807T0/1-859 QPLIAPGSTP ITL------- ---------- ----- BACU003518/1-881 QPLVAPGNTP LLFDQTKCPQ IPPSPPYTQQ LTQTS