KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:11 2014 Check: 00 .. Name: ENSTTRP00000010787/1-1281 Len: 1353 Check: 6873 Weight: 1.00 Name: ENSP00000243344/1-1316 Len: 1353 Check: 4286 Weight: 1.00 Name: ENSBTAP00000005682/1-1316 Len: 1353 Check: 55 Weight: 1.00 Name: bmy_13064T0/1-1003 Len: 1353 Check: 4071 Weight: 1.00 Name: BACU010091/1-1316 Len: 1353 Check: 4154 Weight: 1.00 // 1 50 ENSTTRP00000010787/1-1281 ---------- ---------- ---------- ---------- ----ALINYY ENSP00000243344/1-1316 ---------- ---------- ---------- -------MDS QELKTLINYY ENSBTAP00000005682/1-1316 ---------- ---------- ---------- -------MDS QGLKALINYY bmy_13064T0/1-1003 RVPSWFGPGL RDPETLGSSA GLRQARAQEA RGSASEAMDS QGLKTLINYY BACU010091/1-1316 ---------- ---------- ---------- -------MDS QGLKTLINYY 51 100 ENSTTRP00000010787/1-1281 CQERYFHHVL LAASEGTKRY GSDPIFRFYY AYGTLMEGKT QEALREFEAI ENSP00000243344/1-1316 CQERYFHHVL LVASEGIKRY GSDPVFRFYH AYGTLMEGKT QEALREFEAI ENSBTAP00000005682/1-1316 CQERYFHHVL LVASEGMKSY GSDPVFRFYH AYATLMEGKI QEALREFEAI bmy_13064T0/1-1003 CQERYFHHVL LVASEGTKRY GSDPVFRFYY AYGTLMEGKT QEALREFEAI BACU010091/1-1316 CQERYFHHVL LVASEGTKRY GSDPVFRFYY AYGTLMEGRT QEALREFEAI 101 150 ENSTTRP00000010787/1-1281 KNKQDVSLCS LIALIYTHKM SPNPDREAIQ ESDARVKEQR KGAGPKALYH ENSP00000243344/1-1316 KNKQDVSLCS LLALIYAHKM SPNPDREAIL ESDARVKEQR KGAGEKALYH ENSBTAP00000005682/1-1316 KNKQDVSLCS LIALIYAHKM SPNPDREAIL ESDARVKEQR KGAGPKVLYQ bmy_13064T0/1-1003 KNKQDVSLCS LIALIYTHKM SPNPDREAIL ESDARVKEQR KGAGPKALYH BACU010091/1-1316 KNKQDVSLCS LIALIYTHKM SPNPDREAIL ESDARVKEQR KGAGPKALYH 151 200 ENSTTRP00000010787/1-1281 AGLFLWHIGR HDKAREYVDR MIKMSNGSKE GQVLRAWLDI TRGKEPYTKK ENSP00000243344/1-1316 AGLFLWHIGR HDKAREYIDR MIKISDGSKQ GHVLKAWLDI TRGKEPYTKK ENSBTAP00000005682/1-1316 AGLFLWHVGR HDKAREYIDR MIKISNGSKE GQVLRAWLDI TRRKEPYTKK bmy_13064T0/1-1003 AGLFLWHIGR HDKAREYVDR MIKMSDGSKE GQVLRAWLDI TRGKEPYTKK BACU010091/1-1316 AGLFLWHIGR HDKAREYVDR MIKMSDGSKE GQVLKAWLDI TRGKEPYTKK 201 250 ENSTTRP00000010787/1-1281 ALRYFEEGLQ DGNDIFALLG KAQCLEMRQN YSGALETVNQ IIMNFPSFLP ENSP00000243344/1-1316 ALKYFEEGLQ DGNDTFALLG KAQCLEMRQN YSGALETVNQ IIVNFPSFLP ENSBTAP00000005682/1-1316 ALRYFEEGLQ DGNDIFALLG KAQCLEMRQN YSGALETVNE IIMNFPSFLP bmy_13064T0/1-1003 ALRYFEEGLQ DGNDIFALLG KAQCLEMRQN YSGALETVNQ IIMNFPSFLP BACU010091/1-1316 ALRYFEEGLQ DGNDIFALLG KAQCLEMRQN YSRALETVNQ IIMNFPSFPP 251 300 ENSTTRP00000010787/1-1281 AFVKKMKLQL ALQDWDQTVE TAQRLMLQDN QNVEALRMMA LYYLCREGDI ENSP00000243344/1-1316 AFVKKMKLQL ALQDWDQTVE TAQRLLLQDS QNVEALRMQA LYYVCREGDI ENSBTAP00000005682/1-1316 AFVKKMKLQL ALQDWDQTVE TAQRLMLQDN QNLEALRMLA LYYLCREGDI bmy_13064T0/1-1003 AFVKKMKLQL ALQDWDQTVE TAQRLMLQDN QNVEALRMMA LYYLCREGDI BACU010091/1-1316 AFVKKMKIQL ALQDWDQTVE TAQRLMLQDN QNVEALRMMA LYYLCREGDI 301 350 ENSTTRP00000010787/1-1281 EKAATKLENL GNAVDAMEPQ NAQLFYNITI AFSRTCGRSQ LILQKTQTLL ENSP00000243344/1-1316 EKASTKLENL GNTLDAMEPQ NAQLFYNITL AFSRTCGRSQ LILQKIQTLL ENSBTAP00000005682/1-1316 EKAATQLENL GNALDAVEPQ NAQLFYTITI AFSRTCGRSQ LILQKTQTLL bmy_13064T0/1-1003 EKAATKLENL GNALDAMEPQ NAQLFYNITI AFSRTCGRSQ LILQKTQTLL BACU010091/1-1316 EKAATKLDNL GNALDAVEPQ NAQLFYNITI AFSRTCGRSQ LILQKTQTLL 351 400 ENSTTRP00000010787/1-1281 ERAFSLTPQQ SEFATELGYQ MILQGKVKEA LKWYKTAMTL DETSVSALIG ENSP00000243344/1-1316 ERAFSLNPQQ SEFATELGYQ MILQGRVKEA LKWYKTAMTL DETSVSALVG ENSBTAP00000005682/1-1316 ERAFNLNPQL SEFATELGYQ MILHGKVKEA LKWYKTAMTL DETSVPALVG bmy_13064T0/1-1003 ERAFSLTPQQ SEFATELGYQ MILQGKVKEA LKWYKTAMTL DETSVSALIG BACU010091/1-1316 ERAFSLTPQQ SEFATELGYQ MILQGKVKEA LKWYKTAMTL DETSVSALIG 401 450 ENSTTRP00000010787/1-1281 FIQCQLIEGQ LQEADQQLEF LSEIQQSIGK SAELTYLHAV LAMKKNKRQE ENSP00000243344/1-1316 FIQCQLIEGQ LQDADQQLEF LNEIQQSIGK SAELIYLHAV LAMKKNKRQE ENSBTAP00000005682/1-1316 FIQCQLIEGQ LQDADQHLEF LSEVQQSFGK SAELTYLHAV LAMRKNKRQE bmy_13064T0/1-1003 FIQCQLIEGQ LQDADQQLEF LSEIQQSIGK SAELTYLHAV LAMKKNKRQE BACU010091/1-1316 FIQCQLIEGQ LQDADQQLEF LSEIQQSIGK SAELTYLHAV LAMKKNKRQE 451 500 ENSTTRP00000010787/1-1281 EVINLLNDVL DTHFSHLEDL PLGIQYFEKL NPDFLLEIIT EYLNFCPLQX ENSP00000243344/1-1316 EVINLLNDVL DTHFSQLEGL PLGIQYFEKL NPDFLLEIVM EYLSFCPMQP ENSBTAP00000005682/1-1316 EVINLLNDVL DTHFSQLEDL PLGIQYFEKL NPDFLLEIIT EYLNFCPMQP bmy_13064T0/1-1003 EVINLLNDVL DTHFSHLEDL PLGIQYFEKL NPDFLLEIIT EYLNFCPLQ- BACU010091/1-1316 EVINLLNDVL DTHFSHLEDL PLGIQYFEKL NPDFLLEIIT EYLNFCPLQP 501 550 ENSTTRP00000010787/1-1281 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXDIEAAYN ENSP00000243344/1-1316 ASPGQPLCPL LRRCISVLET VVRTVPGLLQ TVFLIAKVKY LSGDIEAAFN ENSBTAP00000005682/1-1316 ASPGQPLSPL LRRCTSILET IVRTVPGLLQ AVFLIAKVKY LSGDMEAAYN bmy_13064T0/1-1003 ---------- ---C------ ---------- ---FVSSL-- --GDTEAAYN BACU010091/1-1316 ASPGQPLSPL LRRCTSILET IVRTVPGLLQ AVFLIAKVKY LSGDTEAAYN 551 600 ENSTTRP00000010787/1-1281 NLQHCLEHSP SYADAHLLMA QVYLSQEKFK LCSQSLELCL SYNFKVREYP ENSP00000243344/1-1316 NLQHCLEHNP SYADAHLLLA QVYLSQEKVK LCSQSLELCL SYDFKVRDYP ENSBTAP00000005682/1-1316 NLQHCLEHSP SYADAHLLMA QVYLSQEKFK LCSQSLELCL SYDFKVREYP bmy_13064T0/1-1003 NLQHCLEHSP SYADAHLLMA QVYLSQEKFK LCSQSLELCL SYNFKVREYP BACU010091/1-1316 NLQHCLEHSP SYADAHLLMA QVYLSQEKFK LCSQSLELCL SYNFKVREYP 601 650 ENSTTRP00000010787/1-1281 LYHLIKAQSQ KK-GEIAEAI -TLHIAMSLP GMRRTGTSSK SKYIKTEVDA ENSP00000243344/1-1316 LYHLIKAQSQ KKMGEIADAI KTLHMAMSLP GMKRIGASTK SKDRKTEVDT ENSBTAP00000005682/1-1316 LYHLIKAQSQ KKMGEIAEAI KTLHMAMNLP GMRRIGSSSK SKYRKTEVDA bmy_13064T0/1-1003 LYHLIKAQSQ KKMGEIAEAI KTLHMAMSLP GMRRTGTSSK SKYRKTEVDA BACU010091/1-1316 LYHLIKAQSQ KKMGEIAEAI KTLHMAMSLP GMRRTGTSSK SKYRKTEVDA 651 700 ENSTTRP00000010787/1-1281 SHRLSVFLEL VEVHRLNGEQ HEAAKVLQDA IHEFSGTSEE LRVTIANADL ENSP00000243344/1-1316 SHRLSIFLEL IDVHRLNGEQ HEATKVLQDA IHEFSGTSEE VRVTIANADL ENSBTAP00000005682/1-1316 SHRLSVFLEL VEVHRLNGEQ HEAAKVLQDA IHEFSGTSEE LRVTIANADL bmy_13064T0/1-1003 SHRLSVFLEL VEVHRLNGEQ HEAAKVLQDA IHEFSGTPEE LRVTIANADL BACU010091/1-1316 SHRLSVFLEL VEVHRLNGEQ HEAAKVLQDA IHEFSGTSEE LRVTIANADL 701 750 ENSTTRP00000010787/1-1281 ALAQGDVERA LSMLQNVTSE QPYFIETKEK MADIYLKHRK EKMLYITCYR ENSP00000243344/1-1316 ALAQGDIERA LSILQNVTAE QPYFIEAREK MADIYLKHRK DKMLYITCFR ENSBTAP00000005682/1-1316 ALAQGDVERA LSMLRNVTAE QPYFIEAKEK MADIYLKHRK EKMLYITCYR bmy_13064T0/1-1003 ALAQGDVERA LSMLQNVTSE QPYFIETKEK MADIYLKHRK EKMLYITCYR BACU010091/1-1316 ALAQGDVEWA LSMLQNVTSE QPYFIETREK MADIYLKHRK EKMLYITCYR 751 800 ENSTTRP00000010787/1-1281 EIAERMPSPR SFILLGDAYM NIQEXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000243344/1-1316 EIAERMANPR SFLLLGDAYM NILEPEEAIV AYEQALNQNP KDGTLASKMG ENSBTAP00000005682/1-1316 EMAERMPSPR SFLLLGDAYM NIQEPEEAIV AYEQALNHNP KDGTLASKIG bmy_13064T0/1-1003 EIAERMPSPR SFILLGDAYM NIQEPEEAIV AYEQALNQNP KDGTLASKIG BACU010091/1-1316 EIAERMPSPR SFILLGDAYM NIQEPEEAIV AYEQALNQNP KDGTLASKIG 801 850 ENSTTRP00000010787/1-1281 XXXXXXXXXX XAITYYEAAL KNGQQNYLFY DLAELLLKLK WYDKAEKVLQ ENSP00000243344/1-1316 KALIKTHNYS MAITYYEAAL KTGQKNYLCY DLAELLLKLK WYDKAEKVLQ ENSBTAP00000005682/1-1316 KALVKTHNYS KAITYYEAAL KSGQQNYLCY DLAELLLKLK WYDKAEKVLQ bmy_13064T0/1-1003 KALVKTHNYS KAITYYEAAL KNGQQNYLFY DLAELLLKLK WYDKAEKVLQ BACU010091/1-1316 KALVKTHNYS KAITYYEAAL KNGQQNYLFY DLAELLLKLK WYDKAEEVLQ 851 900 ENSTTRP00000010787/1-1281 HALAHEPVNE LSALTEDGRS QVLLAKVYSK VDRPGDAVAS LQQARELQAR ENSP00000243344/1-1316 HALAHEPVNE LSALMEDGRC QVLLAKVYSK MEKLGDAITA LQQARELQAR ENSBTAP00000005682/1-1316 HALAHEPVNE LSALMEDGRF QVLLAKVYSK VDRPDDAVTS LQQARELQAR bmy_13064T0/1-1003 RALAHEPVNE LSALMEDGRS QVLLAKVYSK VDRPGDAITS LQQARELQAR BACU010091/1-1316 HALAHEPVNE LSALMEDGRS QVLLAKVYSK VDRPGDAVTS LQQARELQAR 901 950 ENSTTRP00000010787/1-1281 VLKRVQMEQP DAVPAQKHLA AEICAEIAKH SVAQRDYEKA IKFYREALVH ENSP00000243344/1-1316 VLKRVQMEQP DAVPAQKHLA AEICAEIAKH SVAQRDYEKA IKFYREALVH ENSBTAP00000005682/1-1316 VLKRVQIEQP DAVPAQKHLA AEICAEIAKH SVAQRNYEKA IKFYREALVH bmy_13064T0/1-1003 VLKRVQMEQP DAVPGQKHLA AEICAEIAKH SVAQRDYEKA IKFYREALVH BACU010091/1-1316 VLKRVQMEQP DAVPAQKHLA AEICAEIAKH SIAQRDYEKA IKFYREALVH 951 1000 ENSTTRP00000010787/1-1281 CETDN-IMLE LARLYLAQDD PDACLRHCAL LLQSDQDNEA ATMMMADLMF ENSP00000243344/1-1316 CETDNKIMLE LARLYLAQDD PDSCLRQCAL LLQSDQDNEA ATMMMADLMF ENSBTAP00000005682/1-1316 CETDNKIMLE LARLYLLQDD PDACLRHCAL LLQSDQDNEA ATMMMADLMF bmy_13064T0/1-1003 CETDNKIMLE LARLYLAQDD PDACLRHCAL LLXSDQDNEA ATMMMADLMF BACU010091/1-1316 CETDNKIMLE LARLYLAQDD PDACLRHCAL LLQSDQDNEA ATMMMADLMF 1001 1050 ENSTTRP00000010787/1-1281 RRQDYEQAVF HLQQLLERKP DNYMTLSRLI DLLRRCGKLE DVPRFFLMAE ENSP00000243344/1-1316 RKQDYEQAVF HLQQLLERKP DNYMTLSRLI DLLRRCGKLE DVPRFFSMAE ENSBTAP00000005682/1-1316 RKQDYEQAVF HLQQLLERKP DNYMTLSRLI DFLRRCGKLE DVPRFFLMAE bmy_13064T0/1-1003 RKQDYEQAVF HLQQLLERKP GKYPLI---- ---------- ---------- BACU010091/1-1316 RKQDYEQAVF HLQQLLERKP DNYMTLSRLI DLLRRCGKLE DVPRFFLMAE 1051 1100 ENSTTRP00000010787/1-1281 KRNSRAKLEP GFQYCKGLYL WYTGEPNDAL RHFNKARKDS DWGQNALYNM ENSP00000243344/1-1316 KRNSRAKLEP GFQYCKGLYL WYTGEPNDAL RHFNKARKDR DWGQNALYNM ENSBTAP00000005682/1-1316 KRNSRAKLEP GFQYCKGLYL WYTGEPNDAL RHFNKARKDS DWGQNALYNM bmy_13064T0/1-1003 ---------- ---------- ---------- ---------- ---------- BACU010091/1-1316 KRNSRAKLEP GFQYCKGLYL WYTGEPNDAL RHFNKARKDS DWGQNALYNM 1101 1150 ENSTTRP00000010787/1-1281 IEICLNPDNE TIGGEVFENL DGDLGNSTEK QESVQLAVRT AEKLLKELKP ENSP00000243344/1-1316 IEICLNPDNE TVGGEVFENL DGDLGNSTEK QESVQLAVRT AEKLLKELKP ENSBTAP00000005682/1-1316 IEICLNPDNE TVGGEVFENL DADLGNSTEK QESVQLAVRT AEKLLKELKP bmy_13064T0/1-1003 ---------- ---------- ---------- ---------- ---------- BACU010091/1-1316 IEICLNPDNE TVGGEVFENL DGDLGNSTEK QESVQLAVRT AEKLLKELKP 1151 1200 ENSTTRP00000010787/1-1281 QTVQGHVQLR IMENCCLMAT KQKSNVEQAL NTFTEIATSE KDHIPALLGM ENSP00000243344/1-1316 QTVQGHVQLR IMENYCLMAT KQKSNVEQAL NTFTEIAASE KEHIPALLGM ENSBTAP00000005682/1-1316 QTVQGQVQLR IMENYCLMAT KQKSNVEQAL NTFTEIAASE KDHVPALLGM bmy_13064T0/1-1003 ---------- ---------- ---------- -----IPSNA INSLSLLFG- BACU010091/1-1316 QTVQGHVQLR IMENCCLMAT KQKSNVEQAL NTFTEIATSE KDHIPALLGM 1201 1250 ENSTTRP00000010787/1-1281 ATAYMILKQT PRARNQLKRI AKMNWNPIDA EDFERSWLLL ADIYIQSAKY ENSP00000243344/1-1316 ATAYMILKQT PRARNQLKRI AKMNWNAIDA EEFEKSWLLL ADIYIQSAKY ENSBTAP00000005682/1-1316 ATAHMILKQT PRARNQLKRI AKMNWNPIDA EDFERSWLLL ADIYIQSAKY bmy_13064T0/1-1003 ---------- ---------- ---------- ---------- ---------- BACU010091/1-1316 ATAYMILKQT PRARNQLKRI AKMNWNPVDA EDFERSWLLL ADIYIQSAKY 1251 1300 ENSTTRP00000010787/1-1281 DMAEELLKRC LRHNRSCCKA YEYMGYIMEK EQAYTDAALN YEMAWKHGNQ ENSP00000243344/1-1316 DMAEDLLKRC LRHNRSCCKA YEYMGYIMEK EQAYTDAALN YEMAWKYSNR ENSBTAP00000005682/1-1316 DMAEELIKRC LRHNRSCCKA YEYMGYIMEK EQAYMDAALN YEIAWKHGNQ bmy_13064T0/1-1003 ---------- ---------- ---------- ---------- ---------- BACU010091/1-1316 DMAEELLKRC LRHNRSCCKA YEYMGYIMEK EQAYTDAALN YEMAWKHGNQ 1301 1350 ENSTTRP00000010787/1-1281 TNPAVGYKLA FNYLKAKKFV DAIDVCHQ-- ---------- ---------- ENSP00000243344/1-1316 TNPAVGYKLA FNYLKAKRYV DSIDICHQVL EAHPTYPKIR KDILDKARAS ENSBTAP00000005682/1-1316 TNPAVGYKLA FNYLKAKRYV DAIDICHQVL EAHPTYPKIR KDILDKARTS bmy_13064T0/1-1003 ---------- ---------- ---------- ---------- ---------- BACU010091/1-1316 TNPAVGYKLA FNYLKAKRYV DAIDVCHQVL EAHPTYPKIR KDILDKARTS 1351 1400 ENSTTRP00000010787/1-1281 --- ENSP00000243344/1-1316 LRP ENSBTAP00000005682/1-1316 LRP bmy_13064T0/1-1003 --- BACU010091/1-1316 LRP