KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:12 2014 Check: 00 .. Name: ENSTTRP00000012343/1-694 Len: 699 Check: 806 Weight: 1.00 Name: ENSP00000422607/1-698 Len: 699 Check: 1781 Weight: 1.00 Name: ENSBTAP00000005684/1-699 Len: 699 Check: 2307 Weight: 1.00 Name: bmy_00315T0/1-564 Len: 699 Check: 6932 Weight: 1.00 Name: BACU007184/1-653 Len: 699 Check: 7775 Weight: 1.00 // 1 50 ENSTTRP00000012343/1-694 -MQAHELSQF FRMPEMVDFR QYVRTLPTNT LMCFGAFAAL TTFWYATRPR ENSP00000422607/1-698 -MQAHELFRY FRMPELVDFR QYVRTLPTNT LMGFGAFAAL TTFWYATRPK ENSBTAP00000005684/1-699 MMQAHELFQY FRLPELLDFR QYVRTLPTNT LMGFGAFAAL TTFWYATRPR bmy_00315T0/1-564 MLSADVPSVC LSFPQ----- ---------- ---------- ---------- BACU007184/1-653 -MQAHELSQY FRMPEMVDFR QYVRTLPTNT LMGFGAFAAL TTFWYATRPR 51 100 ENSTTRP00000012343/1-694 ALKPPCDLAM QSVQVAGSDG ARRSVLLDSD EPLVYFYDDV RTLYEGFQRG ENSP00000422607/1-698 PLKPPCDLSM QSVEVAGSGG ARRSALLDSD EPLVYFYDDV TTLYEGFQRG ENSBTAP00000005684/1-699 ALKPPCDLAM QSVEVPGSDG ARRSTLLDSD EPLVYFYDDV RTLYEGFQRG bmy_00315T0/1-564 ---------- ------GSDG ARRSVLLDGD EPLVYFYDDV RTLYEGFQRG BACU007184/1-653 ALKPPCDLAM QSVQVAGSDG ARRSVLLDSD EPLVYFYDDV RTLYEGFQRG 101 150 ENSTTRP00000012343/1-694 IQISNNGPCL GSRKPDQPYE WLSYKQVAEM SECVGSALLH KGFKAAPDQF ENSP00000422607/1-698 IQVSNNGPCL GSRKPDQPYE WLSYKQVAEL SECIGSALIQ KGFKTAPDQF ENSBTAP00000005684/1-699 LHVSNNGPCL GSRKPDQPYE WLSYKQVEDM AECVGSALLH KGFKAAPDQF bmy_00315T0/1-564 IQLSNNGPCL GSRKPDQPYE WLSYKQVAEM SECVGSALLH KGFKAAPDQF BACU007184/1-653 IQLSNNGPCL GSRKPDQPYE WLSYKQVAEM SECVGSALLH KGFKAAPDQF 151 200 ENSTTRP00000012343/1-694 IGIFSQNRPE WVIIEQGCFA YSMVIVPLYD TLGAEAITYI INKAELSLVF ENSP00000422607/1-698 IGIFAQNRPE WVIIEQGCFA YSMVIVPLYD TLGNEAITYI VNKAELSLVF ENSBTAP00000005684/1-699 IGIFAQNRPE WVIIEQGCFT YSMVIVPLYD TLGTEAITYI INKAELSLVF bmy_00315T0/1-564 IGIFSQNRPE WVIIEQGCFA YSMVIVPLYD TLGTEAITYI INKAELSLVF BACU007184/1-653 IGIFSQNRPE WVIIEQGCFA YSMVIVPLYD TLGTEAITYI INKAELSLVF 201 250 ENSTTRP00000012343/1-694 VDKPGKAILL LEGVENKLTP SLKTIVLMDS YGSNLSDRGK KCGVELISLK ENSP00000422607/1-698 VDKPEKAKLL LEGVENKLIP GLKIIVVMDA YGSELVERGQ RCGVEVTSMK ENSBTAP00000005684/1-699 VDKPEKANLL LEGVENKLIP CLKTIVLMDS YGSDLLERGK KCGVEIISMK bmy_00315T0/1-564 VDKPGKANLL LEGIENKLTP SLKTIVLMDS YGSNLLERGK KCGVEIISMK BACU007184/1-653 VDKPGKANLL LEGIENKLTP SLKTIVLMDS YGSNLSERGK KCGVEIISMK 251 300 ENSTTRP00000012343/1-694 AMEDLGRANR RKPKPPAPED VAIICFTSGT TGNPKGALIT HRNVVSDCSA ENSP00000422607/1-698 AMEDLGRANR RKPKPPAPED LAVICFTSGT TGNPKGAMVT HRNIVSDCSA ENSBTAP00000005684/1-699 AMEDLGRANR QKPKPPVPED LAVICFTSGT TGNPKGAMIT HRNVVSDCSA bmy_00315T0/1-564 AMEDLGRANK RKPKPPAPED IAIICFTSGT TGNPKGALIT HRNVVSDCSA BACU007184/1-653 AMEDLGRANK RKPKPPAPED IAIICFTSGT TGNPKGALIT HRNVVSDCSA 301 350 ENSTTRP00000012343/1-694 FIKMTEGAFV ASSDDTLISF LPLAHMFEKV VEFLMLSHGA KIGFFQGDIR ENSP00000422607/1-698 FVKATENTVN PCPDDTLISF LPLAHMFERV VECVMLCHGA KIGFFQGDIR ENSBTAP00000005684/1-699 FVKMTENTFI PTSDDTLISF LPLAHMFERV VECVMLCHGA KIGFFQGDIR bmy_00315T0/1-564 FMKMTEGAFI ASSDDTLISF LPLAHMFEKV VECVMLCHGA KIGFFQGDIR BACU007184/1-653 FIKMTEGAFI ASSDDTLISF LPLAHMFEKV VEI------- ---F------ 351 400 ENSTTRP00000012343/1-694 LLMDDLKTLQ PTVFPVVPRL LNRMFDRIFA QANTTLKRWL LDFASRRKEA ENSP00000422607/1-698 LLMDDLKVLQ PTVFPVVPRL LNRMFDRIFG QANTTLKRWL LDFASKRKEA ENSBTAP00000005684/1-699 LLMDDLKALQ PTIFPVVPRL LNRMFDRIFG QANTTLKRWL LDFASKRKEA bmy_00315T0/1-564 LLMDDLKTLQ PTIFPVVPRL LNRM------ ---------- ---------- BACU007184/1-653 ---------- ---------- ---------A QANTTLKRWL LDFASKRKEA 401 450 ENSTTRP00000012343/1-694 ELRSGIIRNN SLWDKLIFHK IQSSLGGKVR LMITGAAPVS ATVLTFLRAA ENSP00000422607/1-698 ELRSGIIRNN SLWDRLIFHK VQSSLGGRVR LMVTGAAPVS ATVLTFLRAA ENSBTAP00000005684/1-699 ELRSGIIRNN SLWDKLIFHK IQSSLGGKVR LMITGAAPVS ATVLTFLRAA bmy_00315T0/1-564 ---------- --FDR----- --SSLGGKVR LMITGAAPVS ATVLTFLRAA BACU007184/1-653 ELRSGIIRNN SLWDKLIFHK IQSSLGGKVR LMITGAAPVS ATVLTFLRAA 451 500 ENSTTRP00000012343/1-694 LGCQFYEGYG QTECTAGCCL TVPGDWTAGH VGAPMPCNII KLVDVEEMNY ENSP00000422607/1-698 LGCQFYEGYG QTECTAGCCL TMPGDWTAGH VGAPMPCNLI KLVDVEEMNY ENSBTAP00000005684/1-699 LGCQFYEGYG QTECTAGCCL TVAGDWTAGH VGPPMPCSII KLVDVEEMNY bmy_00315T0/1-564 LGCQFYEGYG QTECTAGCCL TVPGDWTAGH VGAPMPCNII KLVDVEEMNY BACU007184/1-653 LGCQFYEGYG QTECTAGCCL TVPGDWTAGH VGAPMPCNII KLVDVEEMNY 501 550 ENSTTRP00000012343/1-694 MAAKGEGEVC VKGANVFQGY LKDPTNTAEA LDKDGWLHTG DIGKWLPNGT ENSP00000422607/1-698 MAAEGEGEVC VKGPNVFQGY LKDPAKTAEA LDKDGWLHTG DIGKWLPNGT ENSBTAP00000005684/1-699 LAAKGEGEVC VKGSNVFQGY LKDPVKTAEA LDKDGWLHTG DIGKWLPNGT bmy_00315T0/1-564 VAAKGEGE-- ---------- ---------- ---------- -------NGT BACU007184/1-653 VAAKGEGEVC VKGANVFQGY LKDPANTAEA LDKDGWLHTG DIGKWLPNGT 551 600 ENSTTRP00000012343/1-694 LKIIDRKKHI FKLAQGEYIA PEKIENIYQR SEPVAQVFVH GESLQXXXXX ENSP00000422607/1-698 LKIIDRKKHI FKLAQGEYIA PEKIENIYMR SEPVAQVFVH GESLQAFLIA ENSBTAP00000005684/1-699 LKIIDRKKHI FKLAQGEYIA PEKIENIYQR SEPIAQVFVH GESLQAFLIA bmy_00315T0/1-564 LKIIDRKKHI FKLAQGEYIA PEKIENIYQR SEPIAQVFVH GESLQAFLIA BACU007184/1-653 LKIIDRKKHI FKLAQGEYIA PEKIENIYQR SEPIAQVFVH GESLQAFLIA 601 650 ENSTTRP00000012343/1-694 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000422607/1-698 IVVPDVETLC SWAQKRGFEG SFEELCRNKD VKKAILEDMV RLGKDSGLKP ENSBTAP00000005684/1-699 IVVPDVETLG TWAQKRGIVG SFEELCRNKD VKKGILEDMV RLGKESGLKP bmy_00315T0/1-564 IVIPDVETLG PWARKRGFEG SFEELCRNKG VQKAILEDMV RLGKDSGLKA BACU007184/1-653 IVIPDVETLG PWARKRGFEG SFEELCRNKG VQKAILEDMV RLGKDSGLKA 651 700 ENSTTRP00000012343/1-694 XXXVKGI-VP P--FSVDN-V LTPTMKAKRP ELRKYFRSQI DELYSTIKI ENSP00000422607/1-698 FEQVKGITLH PELFSIDNGL LTPTMKAKRP ELRNYFRSQI DDLYSTIKV ENSBTAP00000005684/1-699 FEQVKGIYLH PELFSIDNGL LTPTMKAKRP ELRNYFRSQI DELYSTIKV bmy_00315T0/1-564 FEQVKGISLH PELFSVDNGL LTPTMKAKRP ELRNYFRSQI DELYSTIKI BACU007184/1-653 FEQVKGISLH SELFSVDNGL LTPTMKAKRP ELRNYFRSQI DELYSTIKI