KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:14 2014 Check: 00 .. Name: ENSP00000264047/1-580 Len: 584 Check: 7176 Weight: 1.00 Name: ENSBTAP00000005693/1-580 Len: 584 Check: 8813 Weight: 1.00 Name: ENSTTRP00000005281/1-577 Len: 584 Check: 1051 Weight: 1.00 Name: bmy_08734T0/1-546 Len: 584 Check: 2588 Weight: 1.00 Name: BACU012339/1-584 Len: 584 Check: 5920 Weight: 1.00 // 1 50 ENSP00000264047/1-580 ----MAFHVE GLIAIIVFYL LILLVGIWAA WRTKNSGSAE ERSEAIIVGG ENSBTAP00000005693/1-580 ----MDFQVE GLVAIVVFYL LILLVGIWAA WRTKNSGSAE ERSEAIIVGG ENSTTRP00000005281/1-577 -----TFQVE GLIAIVVFYL LILLVGIWAA WRTKNSGSSG ERSEAIIVGG bmy_08734T0/1-546 MSGASTFQVE GLIAIVAFYL LILLVGIWAA WRTKNSGSSG ERSEAIIVGG BACU012339/1-584 MSGASTFQVE GLIAIVAFYL LILLVGIWAA WRTKNSGSSG ERSEAIIVGG 51 100 ENSP00000264047/1-580 RDIGLLVGGF TMTATWVGGG YINGTAEAVY VPGYGLAWAQ APIGYSLSLI ENSBTAP00000005693/1-580 RDIGLLVGGF TMTATWVGGG YINGTAEAVY VPDYGLAWAQ APIGYSLSLI ENSTTRP00000005281/1-577 RDIGLLVGGF TMTATWVGGG YINGTAEAVY VPDYGLAWAQ APVGYSLSLI bmy_08734T0/1-546 RDIGLLVGGF TMT------- ---------- ---------- ---------- BACU012339/1-584 RDIGLLVGGF TMTATWVGGG YINGTAEAVY VPDYGLAWAQ APIGYSLSLV 101 150 ENSP00000264047/1-580 LGGLFFAKPM RSKGYVTMLD PFQQIYGKRM GGLLFIPALM GEMFWAAAIF ENSBTAP00000005693/1-580 LGGLFFAKPM RSKGYVTMLD PFQQIYGKRM GGLLFIPALM GEMFWAAAIF ENSTTRP00000005281/1-577 LGGLFFAKPM RSKGYVTMLD PFQQIYGKRM GGLLFIPALM GEMFWAAAIF bmy_08734T0/1-546 -GGLFFAKPM RSKGYVTMLD PFQQIYGKRM GGLLFIPALM GEMFWAAAIF BACU012339/1-584 LGGLFFAKPM RSKGYVTMLD PFQQIYGKRM GGLLFIPALM GEMFWAAAIF 151 200 ENSP00000264047/1-580 SALGATISVI IDVDMHISVI ISALIATLYT LVGGLYSVAY TDVVQLFCIF ENSBTAP00000005693/1-580 SALGATISVI IRASVHMSVI VSALIATLYT LVGGLYSVAY TDVVQLFCIF ENSTTRP00000005281/1-577 SALGATISVI ISADVRVSVI VSALIATLYT LVGGLYSVAY TDVVQLFCIF bmy_08734T0/1-546 SALGATISVI ISTDVRVSVI VSALIATLYT LVGGLYAVAY TDVVQLFCIF BACU012339/1-584 SALGATISVI ISTDVRVSVI VSALIATLYT LVGGLYSVAY TDVVQLFCIF 201 250 ENSP00000264047/1-580 VGLWISVPFA LSHPAVADIG FTAVHAKYQK PWLGTVDSSE VYSWLDSFLL ENSBTAP00000005693/1-580 VGLWISVPFA LSNSAVADIG FTALHTKYQK PWLGTIEPFE IYTWLDSFLL ENSTTRP00000005281/1-577 VGLWVSVPFA LSHSAVADIG FTAVHTKYQK PWLGTIEPFE VYTWLDSFLL bmy_08734T0/1-546 VGLWVSVPFA LSHSAVADIG FTAVHTKYQK PWLGTIEPFE VYTWLDSFLL BACU012339/1-584 VGLWVSVPFA LSHAAVADIG FTAVHTKYQK PWLGTIEPFE VYTWLDSFLL 251 300 ENSP00000264047/1-580 LMLGGIPWQA YFQRVLSSSS ATYAQVLSFL AAFGCLVMAI PAILIGAIGA ENSBTAP00000005693/1-580 LMLGGIPWQA YFQRVLSSSS ATYAQVLSFL AAFGCLVMAL PAVLIGAIGA ENSTTRP00000005281/1-577 LMLGGIPWQA YFQRVLSSSA --YAQVLSFL AAFGCMVMAM PAILMGAIGA bmy_08734T0/1-546 LMLGGIPWQA YFQRVLSSSS ATYAQVLSFL AAFGCMVMAL PAILIGAIGA BACU012339/1-584 LMLGGIPWQA YFQRVLSSSS ATYAQVLSFL AAFGCIVMAL PAILIGAIGA 301 350 ENSP00000264047/1-580 STDWNQTAYG LPDPKTTEEA DMILPIVLQY LCPVYISFFG LGAVSAAVMS ENSBTAP00000005693/1-580 STAWNQTAYG PLAPREKQEA DMILPIVLKY LCPVYISYFG LGAVSAAVMS ENSTTRP00000005281/1-577 STDWSQTGYG PLDPKDNQQS DMILPIVLKY LCPVYISYFG LGAVSAAVMS bmy_08734T0/1-546 STDWSQTGYG PLDPKDNQQA DMILPIVLKY LCPVYISYFG LGAVSAAVMS BACU012339/1-584 STDWSQTGYG PLDPKDNQQA DMILPIVLKY LCPVYVSYFG LGAVSAAVMS 351 400 ENSP00000264047/1-580 SADSSILSAS SMFARNIYQL SFRQNASDKE IVWVMRITVF VFGASATAMA ENSBTAP00000005693/1-580 SADSSILSAS SMFARNIYQL SFRQNASDKE IVWVMRITVF VFGASAMTMA ENSTTRP00000005281/1-577 SADSSILSAS SMFARNIYQL SFRQNASDKE LVWVMRITVF VFGASAMTMA bmy_08734T0/1-546 SADSSILSAS SMFARNIYQL SFRQNASDKE LVWVMRITVF VFGASAMTMA BACU012339/1-584 SADSSILSAS SMFARNIYQL SFRQNASDKE LVWVMRITVF VFGAAAMTMA 401 450 ENSP00000264047/1-580 LLTKTVYGLW YLSSDLVYIV IFPQLLCVLF VKGTNTYGAV AGYVSGLFLR ENSBTAP00000005693/1-580 LLTKTVYGLW YLSSDLVYII IFPQLLCVLF IKGTNTYGAA AGYISGLFLR ENSTTRP00000005281/1-577 LLTKTVYGLW YLSSDLVYII IFPQLLCVLF IKGTNTYGAV AGYISGLFLR bmy_08734T0/1-546 LLTKTVYGLW YLSSDLVYII IFPQLLCVLF IKGTNTYGAV AGYISGLFLR BACU012339/1-584 LLTKTVYGLW YLSSDLVYII IFPQLLCVLF IKGTNTYGAV AGYTSGLFLR 451 500 ENSP00000264047/1-580 ITGGEPYLYL QPLIFYPGYY PDDNGIYNQK FPFKTLAMVT SFLTNICISY ENSBTAP00000005693/1-580 VTGGEPYLNL QPLIFYPGYY IDKGGIYNQR FPFKTLAMVT SFLSNICISY ENSTTRP00000005281/1-577 VTGGEPYLNL QPLIFYPGYY IDKSGIYNQR FPFKTLAMVT SFLSNICASY bmy_08734T0/1-546 VTGGEPYLNL QPLIFYPGYY IDKSGIYNQR FPFKTLAMVT SFLSNICISY BACU012339/1-584 VTGGEPYLNL QPLIFYPGYY IDKSGIYNQR FPFKTLAMVT SFLSNICISY 501 550 ENSP00000264047/1-580 LAKYLFESGT LPPKLDVFDA VVARHSEENM DKTILVKNEN IKLDELALVK ENSBTAP00000005693/1-580 IAKYLFESGT LPPKLDVFDA VVARHSEENM DKTILVRNEN IKLDELAPVK ENSTTRP00000005281/1-577 LAKYLFESGT LPPKLDVFDA VVARHSEENM DRTILVRNEN IKLDELAPVK bmy_08734T0/1-546 LAKYLFESGT LPPKLDVFDA VVARHSEENM DRTILVRNEN IKLDELAPVK BACU012339/1-584 LAKYLFESGT LPPKLDVFDA VVARHSEENM DRTILVRNEN IKLDELAPVK 551 600 ENSP00000264047/1-580 PRQSMTLSST FTNKEAFLDV DSSPEGSGTE DNLQ ENSBTAP00000005693/1-580 PRQSITLSST FTHQEALLEM DSSPEGSGTE DNLQ ENSTTRP00000005281/1-577 PRQSITVSST FTNQEALLNM DSSPEGSGTE DNLQ bmy_08734T0/1-546 PRQSITLSST FTNQEALLNM DSSPEGSGTE DNLQ BACU012339/1-584 PRQSITLSST FTNQEALLNM DSSPEGSGTE DNLQ