KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:17 2014 Check: 00 .. Name: ENSTTRP00000012573/1-1007 Len: 1101 Check: 8964 Weight: 1.00 Name: ENSP00000304945/1-1007 Len: 1101 Check: 8096 Weight: 1.00 Name: ENSBTAP00000005698/1-1003 Len: 1101 Check: 4787 Weight: 1.00 Name: bmy_20184T0/1-1034 Len: 1101 Check: 3544 Weight: 1.00 Name: BACU010209/1-1036 Len: 1101 Check: 2557 Weight: 1.00 // 1 50 ENSTTRP00000012573/1-1007 ---------- ---------- ---------- -----MDSGG VGLLGARQPL ENSP00000304945/1-1007 ---------- ---------- ---------- -----MGSGG DSLLGGRGSL ENSBTAP00000005698/1-1003 ---------- ---------- ---------- -----MGAGG ARLLGVHWAL bmy_20184T0/1-1034 TTTTTTTAPA PPSLRCELRP VGQSATDKDR GLRAAMGSGG VGLLGARQPL BACU010209/1-1036 ---------- ---------- ---------- -----MGSGG VCLLGARQPL 51 100 ENSTTRP00000012573/1-1007 PLLLLLVTGG MAQDSPPQIL VHPEDQLLQG PGPAKMSCQA SGQPPPTIRW ENSP00000304945/1-1007 PLLLLLIMGG MAQDSPPQIL VHPQDQLFQG PGPARMSCQA SGQPPPTIRW ENSBTAP00000005698/1-1003 PLLLL--TGS MAQDFPPQIL VHPEDQLFQG PDPAKMSCRA SGQPPPTIRW bmy_20184T0/1-1034 PLLFLLVTGG MAQDSPPQIL VHPEDQLLQG PGPAKMSCQA SGQPPPTIRW BACU010209/1-1036 PLLLLLVTGG MAQDSPPQIL IHPEDQLLQG PGPAKMSCQA SGQPPPTIRW 101 150 ENSTTRP00000012573/1-1007 LLNGHPLSMV PPDIHHLLPD GTLLLLRPPP RGRAHDDQVL STDLGVYTCE ENSP00000304945/1-1007 LLNGQPLSMV PPDPHHLLPD GTLLLLQPPA RGHAHDGQAL STDLGVYTCE ENSBTAP00000005698/1-1003 LLDGHPLSMV PPDVHHLLPD GTLLLLRPPP RGRAHDDHTR STDLGVYTCE bmy_20184T0/1-1034 LLNGHPLSMV PPDIHHLLPD GTLLLLRPPP RGRAHDNQAL STDLGVYTCE BACU010209/1-1036 LLNGHPLSMV PPDIHHLLPD GTLLLLRPPP RGRAHADQAL STDLGVYTCE 151 200 ENSTTRP00000012573/1-1007 ASNRLGTAVS RGARLSVAVL REDFQVQPRD AVATVGEQVI LHCGPPWGHP ENSP00000304945/1-1007 ASNRLGTAVS RGARLSVAVL REDFQIQPRD MVAVVGEQFT LECGPPWGHP ENSBTAP00000005698/1-1003 ASNRLGTAVS RGARLSMAVL QEDFQVQPRD TVAAVGEQVL LQCEPPWGHP bmy_20184T0/1-1034 ASNRLGTAVS RGARLSVAVL REDFQVQPRD AVATVGEQVI LQCGPPWGHP BACU010209/1-1036 ASNRLGTAVS RGARLSVAVL REDFQVQPRD AVATVGEQVI LQCGPPWGHP 201 250 ENSTTRP00000012573/1-1007 EPTVSWWKDG KPLALQPGRH SVSRGSLLMA RAEKSDAGTY MCVATNSAGR ENSP00000304945/1-1007 EPTVSWWKDG KPLALQPGRH TVSGGSLLMA RAEKSDEGTY MCVATNSAGH ENSBTAP00000005698/1-1003 EPTVSWWKDE KPLALQSGRH SVSQGSLLMA RAEKSDAGTY MCMATNSAGQ bmy_20184T0/1-1034 EPTVSWWKDG KPLALQPGRH SVSRGSLLMA RAEKSDAGTY MCVATNSAGR BACU010209/1-1036 EPTVSWWKDG KPLALQPGRH SVSRGSLLMA RAEKSDAGTY MCVATNSAGR 251 300 ENSTTRP00000012573/1-1007 RESRAARVSV QEPQDHKEPL ELLAVRIQLE NVTLLNPDPA KGTKPGPAVW ENSP00000304945/1-1007 RESRAARVSI QEPQDYTEPV ELLAVRIQLE NVTLLNPDPA EGPKPRPAVW ENSBTAP00000005698/1-1003 RKSRVARVSI QEPRDYKEPL ELLAVHIQLE NVTLLNPDPK KGTKPGPAGW bmy_20184T0/1-1034 RESRAARVSV QEPQDYEEPL ELLAVRIQLE NVTLLNPDPA KGTKPGPAVW BACU010209/1-1036 RESRAARVSV QEPQEYKEPL ELLAVRIQLE N--------- ---------- 301 350 ENSTTRP00000012573/1-1007 LSWKVSGPAA PAQSYTALFR TPAAPGGQGA PWAEALLAGW QSAELEGLQW ENSP00000304945/1-1007 LSWKVSGPAA PAQSYTALFR TQTAPGGQGA PWAEELLAGW QSAELGGLHW ENSBTAP00000005698/1-1003 LSWKVSGPAA PAQSYTALFR TQAAPGGQGA PWAEVLLAGW QSAELGGLHW bmy_20184T0/1-1034 LSWKVSGPAA PAQSYTALFR TQAAPGGQGA PWAEALLAGW HSAELEGLRW BACU010209/1-1036 ----VSGPAA PAQSYTALFR TQAAPGGQGA PWAEALLAGW QSAELEGLHW 351 400 ENSTTRP00000012573/1-1007 GQDYEFKVRP SSGRAQGPDS NVLLLRLPEQ VPSAPPQEVT LKPGNGSVLV ENSP00000304945/1-1007 GQDYEFKVRP SSGRARGPDS NVLLLRLPEK VPSAPPQEVT LKPGNGTVFV ENSBTAP00000005698/1-1003 GQDYEFKVRP SSGRAQGPDS NVLLLRLPEQ VPSAPPQEVT LKPGNGTILV bmy_20184T0/1-1034 GQDYEFKVRP SSGRAQGPDS NVLLLRLPEQ VPSAPPQEVT LKPGNGSVLV BACU010209/1-1036 GQDYEFKVRP SSGRAQGPDS NVLLLRLPEQ VPSAPPQEVT LLPGNGSVLV 401 450 ENSTTRP00000012573/1-1007 SWVPPPAENH NGIIRGYQVW SLGNTSLSPA NWTVAGEQTR LEIATRVPGS ENSP00000304945/1-1007 SWVPPPAENH NGIIRGYQVW SLGNTSLPPA NWTVVGEQTQ LEIATHMPGS ENSBTAP00000005698/1-1003 SWIPPPAENH NGIIRGYQVW SLGNTSLPPA NWTVVGEQTQ LEIATRMSGS bmy_20184T0/1-1034 SWVPPPAEKH NGIIRGYQVW SLGNTSLPPA NWTVVGEQTR LEIATRMPGS BACU010209/1-1036 SWVPPPAEKH NGIIRGYQVW SLGNTSLPPA NWTVAGEQTR LEIATRMPGS 451 500 ENSTTRP00000012573/1-1007 YCVQVAAVTG AGAGQPSSPV CLFL------ ---------- ---------- ENSP00000304945/1-1007 YCVQVAAVTG AGAGEPSRPV CLLL------ ---------- ---------- ENSBTAP00000005698/1-1003 YCIQVAAVTG AGAGQPSSPV CLLL------ ---------- ---------- bmy_20184T0/1-1034 YCVQVAAVTG AGAGQPSSPV CLLL------ ---------- ---------- BACU010209/1-1036 YCVQVAAVTG AGAGQPSSPV CLLLGEDSAP RPHPDPFRPI SAFLSPRSRF 501 550 ENSTTRP00000012573/1-1007 ---------- ---------- -----EQAVE QALQEPSAHG PWTLEQLRAA ENSP00000304945/1-1007 ---------- ---------- -----EQAME RATQEPSEHG PWTLEQLRAT ENSBTAP00000005698/1-1003 ---------- ---------- -----EQAME RAAQQPSAHS PWTLEQLWAA bmy_20184T0/1-1034 ---------- ---------- -----EQAVE QAAQEPSAHG PWTLEQLRAA BACU010209/1-1036 RLLPLVCPTL TASAAPSPLS SSSHTEQAVE QAAQEPSAHG PWTLEQLRAA 551 600 ENSTTRP00000012573/1-1007 LRRPEVIASG GVVLWLLLLG TAVCIHRRRR AGLHLGPGLY RHTSEDAILK ENSP00000304945/1-1007 LKRPEVIATC GVALWLLLLG TAVCIHRRRR ARVHLGPGLY RYTSEDAILK ENSBTAP00000005698/1-1003 LKRPEVIASG GVVLWLLLLG IAMCIHRRRR AGVRLGPGLY RYTSEDAILK bmy_20184T0/1-1034 LRRPEVIASG GVVLWLLLLG TAVCIHRRRR AGVHLGPGLY RHTSEDAILK BACU010209/1-1036 LRRPEVIASG GVVLWLLLLG TAVCVHRRRR AGVHLGPGLY RHTSEDAILK 601 650 ENSTTRP00000012573/1-1007 HXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304945/1-1007 HRMDHSDSQW LADTWRSTSG SRDLSSSSSL SSRLGADARD PLDCRRSLLS ENSBTAP00000005698/1-1003 HRMDHSDSPW LADTWRSTSG SRDLSSSSSL SSRLGVDPRD PLDGRRSLIS bmy_20184T0/1-1034 HRMDHSDSPW LADTWRSTSG SRDLSSSSSL SSRLGVDPRD PLDGRRSLIS BACU010209/1-1036 HRMDHSDSPW LADTWRSTSG SRDLSSSSSL SSRLGVDPRD PLDGRRSLIS 651 700 ENSTTRP00000012573/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304945/1-1007 WDSRSPGVPL LPDTSTFYGS LIAELPSSTP ARPSPQVPAV RRLPPQLAQL ENSBTAP00000005698/1-1003 WDPRSPGVPL LPDTSTFYGS LIAEGPSSPP ARPSPQAPAA RRLTPQLAQL bmy_20184T0/1-1034 WDPRSPGVPL LPDTSTFYGS LINELPSSPP ARPSPQAPAA RRLTPQLARA BACU010209/1-1036 WDPRSPGVPL LPDTSTFYGS LINELPSSPP ARPSPQAPAA RRLTPQLARA 701 750 ENSTTRP00000012573/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLHQA NSSPLLRASH ENSP00000304945/1-1007 SSPCSSSDSL CSRRGLSSPR LSLAPAEAWK AKKKQELQHA NSSPLLRGSH ENSBTAP00000005698/1-1003 SSPWPSSDSL CGRRGLSSPR LSLAPAEAWK ARKKQELHQA NSSPLLRASH bmy_20184T0/1-1034 SSPWPSSDSL CVRRGLSSPR LSLAPAEAWK AKKKQELHQA NSSPLLRASH BACU010209/1-1036 SSPWPSSDSL CGRRGLSSPR LSLAPAEAWK AKKKQELHQA NSSPLLRASH 751 800 ENSTTRP00000012573/1-1007 PVELWACELG NRGSKNLSQS PXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304945/1-1007 SLELRACELG NRGSKNLSQS PGAVPQALVA WRALGPKLLS SSNELVTRHL ENSBTAP00000005698/1-1003 PAELWACELG NRGSKNFSQS PGAVPRALVA WRALGPQLLS SSSELMTRPL bmy_20184T0/1-1034 PVELWACELG NRGSKNLSQS PGAVPWALVA WRALGPQLLG SCSELVTHPR BACU010209/1-1036 PVELWACELG NRGSKNLSQS PGAVPWALVA WRALGPQLLG SCSELVTRPL 801 850 ENSTTRP00000012573/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX---XX ENSP00000304945/1-1007 PPAPLFPHET PPTQSQQTQP PVAPQAPSSI LLPAAPIPIL SPCSP---PS ENSBTAP00000005698/1-1003 PPVPLAPRG- PPTQSQQTQH SGEPPAPTSP PPPAAPVPAL IPSGTLHVSS bmy_20184T0/1-1034 PAAPLSPRG- PPTQSQQTQH SVEPQAPSCP PLPAAPVPAF IP------SS BACU010209/1-1036 PAAPLSPRG- PPTQSQQTQH SVEPQAPSCP PLPAAPVPAF IP------SS 851 900 ENSTTRP00000012573/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304945/1-1007 PQASSLSGPS PASSRLSSSS LSSLGEDQDS VLTPEEVALC LELSEGEETP ENSBTAP00000005698/1-1003 PQASSLSGPS PASSRLSSSS LSSLGEDQDS VLTPEEVALC LELSEGEETP bmy_20184T0/1-1034 PQASSLSGPS PASSRLSSSS LSSLGDDQDS VLTPEEVALC LELSEGEETP BACU010209/1-1036 PQASSLSGPS PASSRLSSSS LSSLGDDQDS VLTPEEVALC LELSEGEETP 901 950 ENSTTRP00000012573/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304945/1-1007 RNSVSPMPRA PSPPTTYGYI SVPTASEFTD MGRTGGGVGP KGGVLLCPPR ENSBTAP00000005698/1-1003 RNSVSPMPRA PSPPITYGYI SVPTASDLAD MGRPGGGVGS EVRGLLCPPR bmy_20184T0/1-1034 RNSVSPMPRT PSPPITYGYI SVPTASELAD MSRPGGGVGS EVRGLLCPPR BACU010209/1-1036 RNSVSPMPRT PSPPVTYGYI SVPTASELAD MGRPGGGVGS EVRGLLCPPQ 951 1000 ENSTTRP00000012573/1-1007 XXXXXXPSEG SLANGWGSAS EDNAPSARAS LVSSSDGSFL ADAHFARALA ENSP00000304945/1-1007 PCLTPTPSEG SLANGWGSAS EDNAASARAS LVSSSDGSFL ADAHFARALA ENSBTAP00000005698/1-1003 PCLTPTPSEG SLANGWGSAS EDNGPSARAS LVSSSDGSFL ADAHFARALA bmy_20184T0/1-1034 PCPTPTPSEG SLANGWGSAS EDNAPSARAS LVSSSDGSFL ADAHFARALA BACU010209/1-1036 PCPTPTPSEG SLANGWGSAS EDNAPSARAS LVSSSDGSFL ADAHFARALA 1001 1050 ENSTTRP00000012573/1-1007 VAADSFGFGL EPREADCVFT DALSPPSPRD DLFLNSALSL PPWEWRSDWL ENSP00000304945/1-1007 VAVDSFGFGL EPREADCVFI DASSPPSPRD EIFLTPNLSL PLWEWRPDWL ENSBTAP00000005698/1-1003 VAADSFGFGL EPREADCVFT DASSPPSPRD DLSLTSTLSL TPWEWRSDWL bmy_20184T0/1-1034 VAADSFGFGL EPREADCVFT DALSPPSPRD DLFLNSALSL PPWEWRSDWL BACU010209/1-1036 VAADSFGFGL EPREADCVFT DALSPPSPRD DLFLNSALSL PPWEWRSEWL 1051 1100 ENSTTRP00000012573/1-1007 EDMEKNHTQW LGRGLPPWPS TSRISSQRSH VSCPAPMAGA SPTDSS---- ENSP00000304945/1-1007 EDMEVSHTQR LGRGMPPWPP DSQISSQRSQ LHCRMPKAGA SPVDYS---- ENSBTAP00000005698/1-1003 EDIEKNPTQW LGRGLPPWLP ETRISSQKSQ LSSPVPKAGD SS-------- bmy_20184T0/1-1034 EDMEKNHTQW LGRGLPPWPP TSRISSQRSQ LSCPAPKAGD AS-------- BACU010209/1-1036 EDMEKNHTQW LGRGLPPWPP TSRISSQRSQ LSCSAPKAGG KCLAGWLMWR 1101 1150 ENSTTRP00000012573/1-1007 - ENSP00000304945/1-1007 - ENSBTAP00000005698/1-1003 - bmy_20184T0/1-1034 - BACU010209/1-1036 S