KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:19 2014 Check: 00 .. Name: ENSP00000327323/1-484 Len: 493 Check: 4941 Weight: 1.00 Name: ENSBTAP00000005725/1-484 Len: 493 Check: 1335 Weight: 1.00 Name: ENSTTRP00000013780/1-483 Len: 493 Check: 9020 Weight: 1.00 Name: bmy_22415T0/1-493 Len: 493 Check: 4281 Weight: 1.00 Name: BACU005880/1-484 Len: 493 Check: 791 Weight: 1.00 // 1 50 ENSP00000327323/1-484 MWYVSTRGVA PRVNFEGALF SGYAPDGGLF MPEELPQLDR GTLCQWSTLS ENSBTAP00000005725/1-484 MWYVSTRGMA PRIDFEEALF SGYAPDGGLY MPEELPQLGR ETLHEWSTLS ENSTTRP00000013780/1-483 MWYVSTRGMA PRVDFEGALF SGYAPDGGLY MPEKLPQLDR DTLRQWSVAS bmy_22415T0/1-493 MWYVSTRGMA PRVDFEGALF SGYAPDGGLY MPEELPQLDR ETLRQWSVVS BACU005880/1-484 MWYVSTRGMA PRVDFEGALF SGYAPDGGLY MPEELPQLDR ETLRQWSVLS 51 100 ENSP00000327323/1-484 YPGLVKELCA LFIGSELLPK DELNDLIDRA FSRFRHREVV HLSRLRNGLN ENSBTAP00000005725/1-484 YPSLVKELCS LFIGPELIPR DDLNDLIDRA FSRFRHREVV HLSRLRNGLN ENSTTRP00000013780/1-483 YPSLVKELCS LFIGPELIPR DDLNDLIDRA FSRFRHKEVV HLSRLRNGLN bmy_22415T0/1-493 YPSLVKELCS LFIGPELIPR DDLNDLIDRA FSRFRHKEVV HLSRLRNGLN BACU005880/1-484 YPSLVKELCS LFIGPELIPR DDLNDLIDRA FSRFRHKEVV HLSRLRNGLN 101 150 ENSP00000327323/1-484 VLELWHGVTY AFKDLSLSCT TQFLQYFLEK REKHVTVVVG TSGDTGSAAI ENSBTAP00000005725/1-484 VLELWHGVTY AFKDLSLCCT AQFLQYFLEK RKRHITVVVG TSGDTGSAAI ENSTTRP00000013780/1-483 VLELWHGVTY AFKDLSLCCA AQFLQYFLEK RKKHITVVVG TSGDTGSAAI bmy_22415T0/1-493 VLELWHGVTY AFKDLSLCCA ARFLQYFLEK RKKHITVVVG TSGDTGSAAI BACU005880/1-484 VLELWHGVTY AFKDLSLCCA ARFLQYFLEK RKKHITVVVG TSGDTGSAAI 151 200 ENSP00000327323/1-484 ESVQGAKNMD IIVLLPKGHC TKIQELQMTT VLKQNVHVFG VEGNSDELDE ENSBTAP00000005725/1-484 ESVQGAKNVD IIVLLPKGHC TKIQELQMTT VLRENVHVFG VEGNSDELDE ENSTTRP00000013780/1-483 ESVQGAENVD IIVLLPKGRC TKIQELQMTT VLRENVHVFG VEGNSDELDE bmy_22415T0/1-493 ESVQGAENVD LIVLLPKGRC TKIQELQMTT XLRENVHVFG VEGSSDELDE BACU005880/1-484 ESVQGAENVD LIVLLPKGRC TKIQELQMTT VLRENVHVFG VEGNSDELDE 201 250 ENSP00000327323/1-484 PIKTVFADVA FVKKHNLMSL NSINWSRVLV QMAHHFFAYF QCTPSLDTHP ENSBTAP00000005725/1-484 PIKTVFADMA FVKKHNLMSL NSINWSRVLV QIAHHFFAYF RCAPSLDMHP ENSTTRP00000013780/1-483 PIKAVFADVA FVKEHSLMSL NSINWSRVLV QMAHHFFAYF RCAPTLDLHP bmy_22415T0/1-493 PIRAVFADVA FVKEHNLMSL NSINWSRVLV QMAHHFFAYF RCAPALDLHP BACU005880/1-484 PIKAVFADVA FVKEHNLMSL NSVNWSRVLV QMAHHFFAYF RCAPALDLHP 251 300 ENSP00000327323/1-484 LPLVEVVVPT GAAGNLAAGY IAQKIGLPIR LVVAVNRNDI IHRTVQQGDF ENSBTAP00000005725/1-484 LPPVEVVVPT GAAGNLAAGC IAQKMGLPIH LVVAVNSNDI IHRTVQWGDF ENSTTRP00000013780/1-483 LPPVEVVVPS GGAGSLAAGF IAQKMGLPIH LVVAVNSNDI IHRTVQRGDF bmy_22415T0/1-493 LSPVEVVVPS GAAGNLAAGF IAQKMGLPIH LVVAVNYNDI IHRTVQRGDF BACU005880/1-484 LPPVEVVVPS GAAGNLAAGF IAQKMGLPIH LVVAVNYNDI IHRTVQRGDF 301 350 ENSP00000327323/1-484 SLSEAVKSTL ASAMDIQVPY NMERVFWLLS GSDSQVTRAL MEQFERTQSV ENSBTAP00000005725/1-484 SLSKAVKPTL ASAMDIQVPY NMERIFWLLS SSDSQVIRAL MEQFERTKSV ENSTTRP00000013780/1-483 SLSEAVKPTL ASAMDIQVPY NMERIFWLLS GSDSQVTRAL MEQFERTRGV bmy_22415T0/1-493 SLSEAVKPTL ASAMDIQVPY NMERIFWLLS GSDSQVTRAL MEQFERTGSV BACU005880/1-484 SLSEAVKPTL ASAMDIQVPY NMERIFWLLA GSDSQVTRAL MEQFERTGSV 351 400 ENSP00000327323/1-484 NLPKELHSK- --------LS EAVTSVSVSD EAITQTMGRC WDENQYLLCP ENSBTAP00000005725/1-484 SLPKELHSK- --------LL EAVTSQSVSD EAITQTMGRC WQENQYLLCP ENSTTRP00000013780/1-483 SLPKELHSK- --------LS EAVISQSVSD EAITQTMGRC WEENQYLLCP bmy_22415T0/1-493 SLPKELHSKK EKFYLHRWLS EAVTSQSVSD EAITQTMGRC WEENQYLLCP BACU005880/1-484 SLPKELHSK- --------LS EAVTSQSVSD EAIIQTMGRC WEENQYLLCP 401 450 ENSP00000327323/1-484 HSAVAVNYHY QQIDRQQPST PRCCLAPASA AKFPEAVLAA GLTPETPAEI ENSBTAP00000005725/1-484 HSAVAVSCHY QQVDRQQPSP PRCCLAPASA AKFPEAVRAA RLTVDTPAEI ENSTTRP00000013780/1-483 HSAVAVSYHY QQ-DGRQPSP PRCCLAPASA AKFPEAVLAA GLTPETPAEI bmy_22415T0/1-493 HSAVAVSYHY QQVDRRQPSP PRSCLAPASA AKFPEAVLAA GLTPETPAEI BACU005880/1-484 HSAVAVSYHY QQADRRQPSP PRSCLAPASA AKFPEAVLAA GLTPETPAEI 451 500 ENSP00000327323/1-484 VALEHKETRC TLMRRGDNWM LMLRDTIEDL SRQWRSHALN TSQ ENSBTAP00000005725/1-484 LALEHKEARC TPMRKGDDWT RMLRDTIEDL SQQWQRRFLN LPA ENSTTRP00000013780/1-483 LALEHKEARC TPMRKGDDWT RMLRGLIEDL SRQWRGRFRN APA bmy_22415T0/1-493 LALEHKEARC TPMRKGDDWT RMLRGLIEDL SRQWQGRFRK APA BACU005880/1-484 LALEHKEARC TPMRKGDDWT RMLRGLIEDL SRQRQGRFRK APA