KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:20 2014 Check: 00 .. Name: BACU018128/1-697 Len: 776 Check: 1221 Weight: 1.00 Name: ENSP00000418748/1-717 Len: 776 Check: 6466 Weight: 1.00 Name: ENSBTAP00000005736/1-717 Len: 776 Check: 5889 Weight: 1.00 Name: bmy_05339T0/1-767 Len: 776 Check: 7557 Weight: 1.00 Name: ENSTTRP00000013857/1-717 Len: 776 Check: 3893 Weight: 1.00 // 1 50 BACU018128/1-697 ---------- -----MRRAE WEFRVQCSPL LNYPGQSKRK KGRSPEDDRT ENSP00000418748/1-717 MTPPPPPPPP PGPDPAADPA ADPCPWPGSL VVLFGATAGA LGRDLGSDET ENSBTAP00000005736/1-717 MTPPPPQPPP PGPNPTADSA ADPRPGPGPL VVLFGATAGA LGPDLGSDET bmy_05339T0/1-767 MTPPPPQPPP SGTNPAADSA ADPRPGPGPL VVLFGATAGA LGPDLGSDET ENSTTRP00000013857/1-717 MTPPPPQPPP SGPNPAADSA ADPRPGPGPL VVLFGATAGA LGQDLGSDET 51 100 BACU018128/1-697 MAIGAGGAKV WSVITSAGTM ERGQRVGTLH KSLVRAEAAA LSPQCREASG ENSP00000418748/1-717 DLI----LLV WQVVEP---- -RSRQVGTLH KSLVRAEAAA LSTQCREASG ENSBTAP00000005736/1-717 DLI----LLV WQVVEP---- -RSRQVGTLH KSLVRAEAAA LSPQCREASG bmy_05339T0/1-767 DLI----LLV WQVVEP---- -RSRQVGTLH KSLVRAEAAA LSPQCREASG ENSTTRP00000013857/1-717 DLI----LLV WQVVEP---- -RSRQVGTLH KSLVRAEAAA LSPQCREASG 101 150 BACU018128/1-697 LSAD------ --------FS QLVSGDVALL GGGPYMLCTD GQQLLRQVLH ENSP00000418748/1-717 LSADSLARAE PLDKVLQQFS QLVNGDVALL GGGPYMLCTD GQQLLRQVLH ENSBTAP00000005736/1-717 LSSDSLARAE PLDKVLQQFS QLVSGDVALL GGGPYMLCTD GQQLLRQVLH bmy_05339T0/1-767 LSADSLARAE PLDKVLQQFS QLVSGDVALL GGGPYMLCTD GQQLLRQVLH ENSTTRP00000013857/1-717 LSADSLARAE PLDKVLQQFS QLVSGDVALL GGGPYTLCTD GQQLLRQVLH 151 200 BACU018128/1-697 PEASRKNLVL PDTFFSFYDL RREFHVQHPS SRPARDLTVA TMAQDLGLET ENSP00000418748/1-717 PEASRKNLVL PDMFFSFYDL RREFHMQHPS TCPARDLTVA TMAQGLGLET ENSBTAP00000005736/1-717 PEASRKNLVL PDTFFSFYDL RREFHVQHPS ACSARDLTVA TMAQELGLET bmy_05339T0/1-767 SEASRKNLVL PDTFFSFYDL RREFHVQHPS SRPARDLTVA TMAQDLGLET ENSTTRP00000013857/1-717 PEASRKNLAL PDTFFSFYDL RREFHVQHPS THPARDLTVA TMAQDLGLET 201 250 BACU018128/1-697 DATEDDFGVW EVKTMVAVIL HLLDGPSGQL FSKPEVVKQK YETGPCSKAD ENSP00000418748/1-717 DATEDDFGVW EVKTMVAVIL HLLKEPSSQL FSKPEVIKQK YETGPCSKAD ENSBTAP00000005736/1-717 DATEDDFGVW EVKTMVAIIL HLLESPSGQL FVKPEGVKQK YETGPCSKAD bmy_05339T0/1-767 DATEDDFGVW EVKTMVAVIL HLLDGPSGQL FSKPEVVKQK YETGPCSKAD ENSTTRP00000013857/1-717 DATEDDFGVW EVKTMVAVIL HLLDGPSGQL FSKPEVVKQK YETGPCSKAD 251 300 BACU018128/1-697 VVDSETVVRA RGLPWQSSDQ DVARFFKGLN IARGGVALCL NAQGRRNGEA ENSP00000418748/1-717 VVDSETVVRA RGLPWQSSDQ DVARFFKGLN VARGGVALCL NAQGRRNGEA ENSBTAP00000005736/1-717 VVDSETVVWA RGLPWQSSDQ DVARFFKGLN IARGGVALCL NAQGRRNGEA bmy_05339T0/1-767 VVDSETVVRA RGLPWQSSDQ DVARFFKGLN IARGGVALCL NAQGRRNGEA ENSTTRP00000013857/1-717 VVDSETVVRA RGLPWQSSDQ DVARFFTGLN IARGGVALCL NAQGRRNGEA 301 350 BACU018128/1-697 LIRFVDSEQR DLALQRHKHH MGVRYIEVYK ATGEEFVKIA GGTSLEVARF ENSP00000418748/1-717 LIRFVDSEQR DLALQRHKHH MGVRYIEVYK ATGEEFVKIA GGTSLEVARF ENSBTAP00000005736/1-717 LIRFVDSEQR DLALQRHKHH MGVRYIEVYK ATGEEFVKIA GGTSLEVARF bmy_05339T0/1-767 LIRFVDSEQR DLALQRHKHH MGVRYIEVYK ATGEEFVKIA GGTSLEVARF ENSTTRP00000013857/1-717 LIRFVDSEQR DLALQRHKHH MGVRYIEVYK ATGEEFVKIA GGTSLEVARF 351 400 BACU018128/1-697 LSREDQVILR LRGLPFSAGP ADVLGFLGPE CPVTGGAEGL LFVRHPDGRP ENSP00000418748/1-717 LSREDQVILR LRGLPFSAGP TDVLGFLGPE CPVTGGTEGL LFVRHPDGRP ENSBTAP00000005736/1-717 LSREDQVILR LRGLPFSAGP ADVLGFLGPE CPVTGGADGL LFVRHPDGRP bmy_05339T0/1-767 LSREDQVILR LRGLPFSAGP ADVLGFLGPE CPVTGGANGL LFVRHPDGRP ENSTTRP00000013857/1-717 LSREDQVILR LRGLPFSAGP ADVLGFLGPE CPVTGGADGL LFVRHPDGRP 401 450 BACU018128/1-697 TGDAFALFAC EELAQAALRR HKGTLGKRYI ELFRSTAAEV QQVLTRYASS ENSP00000418748/1-717 TGDAFALFAC EELAQAALRR HKGMLGKRYI ELFRSTAAEV QQVLNRYASG ENSBTAP00000005736/1-717 TGDAFALFAC EELAQAALRR HKGMLGKRYI ELFRSTAAEV QQVLNRYASS bmy_05339T0/1-767 TGDAFALFAC EELAQAALRR HKGTLGKRYI ELFRSTAAEV QQVLNRYASS ENSTTRP00000013857/1-717 TGDAFALFAC EELAQAALRR HKGTLGKRYI ELFRSTAAEV QQVLNRYASS 451 500 BACU018128/1-697 PLLLSLTAPL LPIPFPLAAG TGRDCVRLRG LPYTATIEDI LSFLGEAAAD ENSP00000418748/1-717 PLLPTLTAPL LPIPFPLAPG TGRDCVRLRG LPYTATIEDI LSFLGEAAAD ENSBTAP00000005736/1-717 PLLPTLTAPL LPIPFPLAAG TGRDCVRLRG LPYTATIEDI LSFLGEAAVD bmy_05339T0/1-767 PLLPTLTAPL LPIPFPLAAG TGRDCVRLRG LPYTATIEDI LSFLGEAAAD ENSTTRP00000013857/1-717 PLLPTLTAPL LPIPFPLAAG TGRDCVRLRG LPYTATIEDI LSFLGEAAAD 501 550 BACU018128/1-697 IRPHGVHMVL NQQGRPSGDA FIQMTSAERA LAAAQRCHKK AMKERYVEVV ENSP00000418748/1-717 IRPHGVHMVL NQQGRPSGDA FIQMTSAERA LAAAQRCHKK VMKERYVEVV ENSBTAP00000005736/1-717 IRPHGVHMVL NQQGRPSGDA FIQMTSAERA LAAAQRCHKK AMKERYVEVV bmy_05339T0/1-767 IRPHGVHMVL NQQGRPSGDA FIQMTSAERA LAAAQRCHKK AMKERYVEVV ENSTTRP00000013857/1-717 IRPHGVHMVL NQQGRPSGDA FIQMTSAERA LAAAQRCHKK AMKERYVEVV 551 600 BACU018128/1-697 PCSTEEMSHV LMGGTLGRSG MSPPPCKLPC ---------- ---------- ENSP00000418748/1-717 PCSTEEMSRV LMGGTLGRSG MSPPPCKLPC ---------- ---------- ENSBTAP00000005736/1-717 PCSTEEMSRV LMGGTLGRSG MSPPPCKLPC ---------- ---------- bmy_05339T0/1-767 PCSTEEMSHV LMGGTLGRSG MSPPPCKLPC ECPRGLGKKE ACGGQAVITL ENSTTRP00000013857/1-717 PCSTEEMSHV LMGGTLGRSG MSPPPCKLPC ---------- ---------- 601 650 BACU018128/1-697 ---------- ---------- ---------- LSPPTYATFQ ATPTLIPTET ENSP00000418748/1-717 ---------- ---------- ---------- LSPPTYTTFQ ATPTLIPTET ENSBTAP00000005736/1-717 ---------- ---------- ---------- LSPPAYATFQ ATPTLIPTET bmy_05339T0/1-767 TFYGGDSLLA APPRAVLGSL QIRSLLLPLG LSPPTYATFQ ATPTLIPTET ENSTTRP00000013857/1-717 ---------- ---------- ---------- LSPPTYATFQ ATPTLIPTET 651 700 BACU018128/1-697 AALYPSSALL PAARVPAAPT PVAYYPGPAT QLYMNYTAYY PSPPVSPTTV ENSP00000418748/1-717 AALYPSSALL PAARVPAAPT PVAYYPGPAT QLYLNYTAYY PSPPVSPTTV ENSBTAP00000005736/1-717 AALYPSSALL PAARVPAAPT PVAYYPGPAT QLYMNYTAYY PSPPVSPTTV bmy_05339T0/1-767 AALYPSSALL PAARVPAAPT PVAYYPGPAT QLYMNYTAYY PSPPVSPTTV ENSTTRP00000013857/1-717 AALYPSSALL PAARVPAAPT PVAYYPGPAT QLYMNYTAYY PSPPVSPTTV 701 750 BACU018128/1-697 GYLTTPPAAL ASAPTSVLSQ PGALVRMQGV PYTAGMKDLL SVFQAYQLAP ENSP00000418748/1-717 GYLTTPTAAL ASAPTSVLSQ SGALVRMQGV PYTAGMKDLL SVFQAYQLPA ENSBTAP00000005736/1-717 GYLTTPPAAL ASAPTSVLSQ PGALVRMQGV PYTAGMKDLL SVFQAYQLAP bmy_05339T0/1-767 GYLTTPPAAL ASAPTSVLSQ PGALVRMQGV PYTAGMKDLL SVFQAYQLAP ENSTTRP00000013857/1-717 GYLTTPPAAL ASAPTSVLSQ PGALVRMQGV PYTAGMKDLL SIFQAYQLAP 751 800 BACU018128/1-697 DDYTSLMPVG DPPRTVLQAP KEWVCL ENSP00000418748/1-717 DDYTSLMPVG DPPRTVLQAP KEWVCL ENSBTAP00000005736/1-717 DDYTSLMPVG DPARTVLQAP KEWVCL bmy_05339T0/1-767 DDYTSLMPVG DPPRTVLQAP KEWVCL ENSTTRP00000013857/1-717 DDYTSLMPVG DPPRTVLQAP KEWVCL