KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:21 2014 Check: 00 .. Name: bmy_15983T0/1-517 Len: 691 Check: 1543 Weight: 1.00 Name: BACU002071/1-679 Len: 691 Check: 9837 Weight: 1.00 Name: ENSTTRP00000013995/1-637 Len: 691 Check: 243 Weight: 1.00 Name: ENSP00000292140/1-640 Len: 691 Check: 9935 Weight: 1.00 Name: ENSBTAP00000005744/1-640 Len: 691 Check: 2111 Weight: 1.00 // 1 50 bmy_15983T0/1-517 MGTRSSPDEG TLPPAVPECD AEVRSQGAAQ PRELPEDSRE QEVPEAAAEL BACU002071/1-679 MGTRSSPDEG TLSPAVPECD AEVRSQGAAQ PRELPEDSRE QEVPEAAAEL ENSTTRP00000013995/1-637 METRSSPDEG TPPPAVPECD AEV------Q PRELPEDSRE QEVPEAPAEL ENSP00000292140/1-640 MGTRSSPEEG TPPPLVPECD VEV------Q PQGHPEESRE QEASEVLAE- ENSBTAP00000005744/1-640 MGTRSRPDLG APPAAVPECD TEVRSQGASK PQGHPKDSRE PEAPEAPAEL 51 100 bmy_15983T0/1-517 PSGHGAEQQA EEEEEVGEGS STESSRDAVE ASPSVQIPAT PPAASQAGEG BACU002071/1-679 PSGHGAEQQA EEEEEVGEGS STESSRGAVE ASPSVQIPAT PPAASQAGEG ENSTTRP00000013995/1-637 PSGQGAEQQT EEEEEAGEGS STESSRDAVE ASPSVQIPAT PPAASQAGEG ENSP00000292140/1-640 PSSRGGAEQQ AEEEEVGEGS STESSRDAPE ATPPIAMAAT PPASTSSREG ENSBTAP00000005744/1-640 PSGQGAEQQA KEEEEVGEGS STESSHDAAE APSPVQTPAT TPAPALSGEG 101 150 bmy_15983T0/1-517 VRGAARRLQA QQLEALTRVA LMEQRVKELQ RQRKKLRI-- ---------- BACU002071/1-679 VRGAARRLQA QQLEALTRVA LMEQRVKELQ RQRKELRIQM EVEVTLLRCE ENSTTRP00000013995/1-637 VRGAARRLRA QQLEALTRVA LLEQRVRELQ RQRKELRIQM EVEVALLRGE ENSP00000292140/1-640 VRGAARRLQG QQLEALTRVA LMEQRVKELQ RQRKELRIEM EVEVALLRGE ENSBTAP00000005744/1-640 VRGAARRLRA QQLEALTRVA LMEQRVKELQ RQRKELRIEM EVEVALLRGE 151 200 bmy_15983T0/1-517 ---------- ---------- ---------- ----QAQRHL SQERDRVESL BACU002071/1-679 LAGERVAVWR EEEQLWELLG QQVDSEKGGR EQHEQAQRHL SQERDRVEGL ENSTTRP00000013995/1-637 LAGERVAVWR KEEQLWELLG QQVDSEKGVQ EQREQEQRHL SQERDRMEGL ENSP00000292140/1-640 LAGERVAARR EEEQLRELLE QQAASEQRGR QQREQEQRRL SQERDRLEGL ENSBTAP00000005744/1-640 LAGERVAARR EEEQLRELLG QQVDSEKGGQ EQREQEQRRL SQERDRVEGL 201 250 bmy_15983T0/1-517 RQRLREAQGQ LDLQPEDQRE RLLQGVQE-- ---------- ---------- BACU002071/1-679 RQRLREAQGQ LDLQPEDQRE RLLQGVQEMR EQLDVAQHAY EDLEFQQLER ENSTTRP00000013995/1-637 RQRLREAQGQ LDLQPEDQRE RLLQGVQEMK EQLDVAQRAY EDLEFQQLER ENSP00000292140/1-640 RQRLRKAQGQ LDSQPEDQRE RLLQGVQEMR EQLDVAQRAY EDLEFQQLER ENSBTAP00000005744/1-640 RQRLQEAQEQ LDSQPEDQHE RLLQGMQEMR EQLDVAQRAY EDLEFQQLER 251 300 bmy_15983T0/1-517 ---------- ---------- ---------- -------RRI QVLEEQLKSL BACU002071/1-679 ESQREEEDWD SPRARALDPK VQELQASVVQ H-R----RRI QVLEEQLKSL ENSTTRP00000013995/1-637 ESQW-EEDWD SPRARALDPK VQELQASVVQ H-RGALQRRI QVL-EQLKSL ENSP00000292140/1-640 ESRQEEEDRD SPGPQVPDPK VQELQASMAQ HRRGALQHRI RVLEEQLKSL ENSBTAP00000005744/1-640 ESRQEEEDRD SPGASVPDPK VQELQASVAQ H-R----RRI QVLEEQLKSL 301 350 bmy_15983T0/1-517 GEQMAAESRG LNQKKEEALQ ALTQ------ ---------- ---------- BACU002071/1-679 GKQMAAESWG LSQKKEEALQ ALTQEQSGLL KLSCLQGTPG GDFSEPGQAL ENSTTRP00000013995/1-637 GEQMAAESRG LSQRR-EALQ ALTQERSRLL KLNCLQGTPG EDFSEPSQAL ENSP00000292140/1-640 GEQMAAESRG LSRKKEEALQ ALSQERSRLL ELNCLQGTPG GDFSEPNPAL ENSBTAP00000005744/1-640 GEQMAAESRG LSRKKEEALQ ALTQERSRLL ELNCLQGTPG GDFSEPNQAL 351 400 bmy_15983T0/1-517 --LLFTQKTD GQLLVLQDPT AHAAAT-TSS CLFSVHSSLQ GSIGLQRTGS BACU002071/1-679 TKLLFTQKTD RQLLVLQDPT AHAAAA-TSS CLFSVHGSLQ GSIGLQRTGS ENSTTRP00000013995/1-637 TKLLFTQKTN RQLLVLQDPT AHAAAA-TSS CLFSVHSSLQ GSIGLQGTGS ENSP00000292140/1-640 TKLLFTQKTD RQLLVLQDAV AHSAATPTSS CLFSVHSSLQ GSIGLQRTGS ENSBTAP00000005744/1-640 TKLLFTQKTD RQLLVLQDPT AHTAAA-TSS CLFSVHSSLQ GSIGLQRTGS 401 450 bmy_15983T0/1-517 LPRKRGERVS QRGSPRPLSF YCTGXL---- ----EASALP PAAGDSGRH- BACU002071/1-679 LPRKRGERVS QRGSPRPLSF FCTGEYVPLP RVCSSAINHP PAAQDGGTWV ENSTTRP00000013995/1-637 LPRKRGERVS QRGSPRPLSF YCTGAL---- ----KASALP PSARDSGRH- ENSP00000292140/1-640 LPRKRGERGS QRGSPRPLSF HCTESL---- ----EASALP PAVGDSGRY- ENSBTAP00000005744/1-640 LSRKRGERAS QRGCPRPLSL HCSGSL---- ----EASALP PEAGDSGRH- 451 500 bmy_15983T0/1-517 PL----YQLL NCG------- -PRNICGALH P--------- -------DIA BACU002071/1-679 PLLGERWRGL DKGASQPPSP SPRRSPGGLG PPASSWRLRE TPPLSAAELL ENSTTRP00000013995/1-637 PL----YQLL NCG------- -PRNSCGALH L--------- -------DIA ENSP00000292140/1-640 PL----YQLL NCG------- -RGNSCGAIH P--------- -------DIA ENSBTAP00000005744/1-640 PL----YQLL NCG------- -PRNR--SLW P--------- -------QFP 501 550 bmy_15983T0/1-517 RMEQLLQQAV AERERLLQAR EGTRRSTEGA SDPPVPAIMA PPTA--RPPG BACU002071/1-679 PQKYLLQQAV AERERLLQAR EGTRRSTEGA SDPPVPAIMA PPTAPSRPPG ENSTTRP00000013995/1-637 RMEHLLQQAV AERERLLQAR EGTRRSTEGA SDPPVPAIMA PPTAPSRPPG ENSP00000292140/1-640 HMERLLQQAM AERERLLKAR EGTRRGTEGS SGPAVPAITA PPTPP-HPPG ENSBTAP00000005744/1-640 RLERLLQQAV AERERLLQAR EGTRRSKEGS SGPPVPAIMA PPAPPSSPAG 551 600 bmy_15983T0/1-517 PRVLDLRQHL ERWGHNPESC PHIRVSGGYC RGPLVKMGGR IKTWRKRWFC BACU002071/1-679 PRVLDLRQHL ERWGHNPESC PHIRVSGGYC RGPLVKMGGR IKTWRKRWFC ENSTTRP00000013995/1-637 PRVLDLRQHL ERWGHNPESC PHIRVSGGYC RGPLVKMGGR IKTWRKRWFC ENSP00000292140/1-640 PRILDLRQHL EGWGHNPENC PHVQVSGCCC RGPLVKMGGR IKTWRKRWFC ENSBTAP00000005744/1-640 PRVLDLRQHL ERWGHNPENC PHLRVSGGCC RGPLVKMGGR IKTWRKRWFC 601 650 bmy_15983T0/1-517 FDRQARRLAY YTDKEETKLK GVIYFQAIEE VYYDHLRCAF KV-KPLLGAA BACU002071/1-679 FDRQARRLAY YTDKEETKLK GVIYFQAIEE VYYDHLRCAF KSPNPRLTFC ENSTTRP00000013995/1-637 FDRQARRLAY YTDKEQTKLK GVIYFQAIEE VYYDHLRCAF KSPNPRLTFC ENSP00000292140/1-640 FDRQARRLAY YADKEETKLK GVIYFQAIEE VYYDHLRCAF KSPNPRLTFC ENSBTAP00000005744/1-640 FDRQARRLAY YADKEETKLK GVIYFQAIEE VYYDHLRCAF KSPNPRLTFC 651 700 bmy_15983T0/1-517 LPSWLEPRLS SLILSLGKAT HSSYSIQHRK PTDHFTAGTK N BACU002071/1-679 VKTY--ERLF YMAAPNPEAM RIWMDVIVTA ADENHAP--- - ENSTTRP00000013995/1-637 VKTY--ERLF YMAAPSPEAM RIWMDVIVTA ADENHDP--- - ENSP00000292140/1-640 VKTY--ERLF YMVAPSPEAM RIWMDVIVTA ADENHAP--- - ENSBTAP00000005744/1-640 VKTY--ERLF YMVAPSPEAV RIWMDVIVTA ADENHAP--- -