KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:22 2014 Check: 00 .. Name: ENSP00000315768/1-851 Len: 989 Check: 7403 Weight: 1.00 Name: ENSBTAP00000005749/1-859 Len: 989 Check: 3738 Weight: 1.00 Name: ENSTTRP00000006775/1-849 Len: 989 Check: 3829 Weight: 1.00 Name: bmy_03919T0/1-974 Len: 989 Check: 9056 Weight: 1.00 Name: BACU008136/1-879 Len: 989 Check: 6515 Weight: 1.00 // 1 50 ENSP00000315768/1-851 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005749/1-859 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006775/1-849 ---------- ---------- ---------- ---------- ---------- bmy_03919T0/1-974 EWQPVSGRLY GNGEFRGSAA HSSLWQGGGF ERRAEAEGGA GGPGAGALSG BACU008136/1-879 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000315768/1-851 ---------- ---------- ---MAQWEML QNLDSPFQDQ LHQLYSHSLL ENSBTAP00000005749/1-859 ---------- ---------- ---MAQWEML QNLDSPFQDQ LHELYSNSLL ENSTTRP00000006775/1-849 ---------- ---------- ---MAQWEML QNLDSPFQDQ LHQLYSNSLL bmy_03919T0/1-974 DRKPGPELLE GAGAETLTRL RPQMAQWEML QNLDSPFQDQ LHQLYSNSLL BACU008136/1-879 ---------- ---------- ---MAQWEML QNLDSPFQDQ LHQLYSNSLL 101 150 ENSP00000315768/1-851 PVDIRQYLAV WIEDQNWQEA ALGSDDSKAT MLFFHFLDQL NYECGRCSQD ENSBTAP00000005749/1-859 PMDVRQHLAV WIEDQNWQKA ALGNDAAMAN MLFLHFLDQL NSECGRCSQD ENSTTRP00000006775/1-849 PVDIRQNLSV WIEDQNWQEA ALGNDEAKAN MLFFHFLDQL NYECSRCSQD bmy_03919T0/1-974 PVDIRQYLAV WIEDQNWQEA ALGNDEAKAN MLFFHFLDQL NYECSRCSQD BACU008136/1-879 PVDIRQYLAV WIEDQNWQEA ALGNDEAKAN MLFFHFLDQL NYECSRCSQD 151 200 ENSP00000315768/1-851 PESLLLQHNL RKFCRDIQPF SQDPTQLAEM IFNLLLEEKR ILIQAQRAQL ENSBTAP00000005749/1-859 SEYFLLQHNL RKFYRDIQAL PTGSTQLAEM IFNLLLEEKR ILTWAQRAQL ENSTTRP00000006775/1-849 PECLLLQHNL RKFYRDIQAF PQGATQLAEM IFNLLLEEKR ILTQAQRAQL bmy_03919T0/1-974 PECLLLQHNL RKFYRDIQAF PQGATQLAEM IFNLLLEEKR ILTQAQRAQS BACU008136/1-879 PECLLLQHNL RKFYRDIQAF PQGATQLAEM IFNLLLEEKR ILTQAQRAQS 201 250 ENSP00000315768/1-851 EQGE-PVLET PVESQQHEIE SRILDLRAMM EKLVKSISQL KDQQDVFCFR ENSBTAP00000005749/1-859 EQRE-PAPEA PGESQQHELD SRILKLQAMK EKLVKSISQL KDQQDVFCFR ENSTTRP00000006775/1-849 EQGEEPALAA PGESQQHEIE SRILELKAMM EKLVKSISQL KDQQDVFYFR bmy_03919T0/1-974 EQGE-PVLAA SGESQQHEIE SRILELKAML EN-----SPL LTLAEVWAGK BACU008136/1-879 EQGE-PALAA SGESQQHEIE SRILELKAML EKLVKSISQL KDQQDVFCFR 251 300 ENSP00000315768/1-851 YKIQA----- --------KG KTPSLDPHQT KEQKILQETL NELDKRRKEV ENSBTAP00000005749/1-859 YNIEK----- --------SV RTPSLDPRQT RQMDILQETL NELDRQRKEV ENSTTRP00000006775/1-849 YKIQT----- --------SA RTPSLDPHQT RQQDILQETL NELDRRRKEV bmy_03919T0/1-974 ERGRSPRSEH LSHSCSCCPA RTPSLDPHQT RQRDILQETL NELDRRRKEV BACU008136/1-879 YKIQT----- --------SA RTPSLDPHQT RQKDILQETL NELDRRRKEV 301 350 ENSP00000315768/1-851 LDASKALLGR LTTLIELLLP KLEEWKAQQQ KACIRAPIDH GLEQLETWFT ENSBTAP00000005749/1-859 LDASKALLGQ LTTLIELLLP KLEEWKVQQQ KACIGAPPVG GLEQLEKWFT ENSTTRP00000006775/1-849 LDASKALLGR LTTLIELLLP KLEEWKVQQQ KACIGGPPDG GLEQLEKWFT bmy_03919T0/1-974 LDASKALLGR LTTLIELLLP KLEEWKVQQQ KACIGGPTDG GLEQLEKWFT BACU008136/1-879 LDASKALLGR LTTLIELLLP KLEEWKVRQQ KACIGGPPDG GLEQLEKWFT 351 400 ENSP00000315768/1-851 AGAKLLFHLR QLLKELKGLS CLVSYQDDPL TKGVDLRNAQ VTELLQRLLH ENSBTAP00000005749/1-859 DGAKLLFHLR QLLKELKELS HMVSYDGDPL NKGVDLREAQ VTELLQRLLH ENSTTRP00000006775/1-849 AGAKLLFHLR QLLKELTGLS HMLTYHGDPL IEXXXXXXXX XXXXXXXXXX bmy_03919T0/1-974 AGAKLLFHLR QLLKELKGLS HMVTYQGDPL IEGVDLRKAQ VTELLQRLLH BACU008136/1-879 AGAKLLFHLR QLLKELQGLS HMVTYQGDPL IEGVDLRKAQ VTELLQRLLH 401 450 ENSP00000315768/1-851 RAFVVETQPC MPQTPHRPLI LKTGSKFTVR TRLLVRLQEG NESLTVEVSI ENSBTAP00000005749/1-859 RAFVVENQPC MPQTLHRPLI LKTGSKFTVR TRLLVRLQEG NESLTAEVSV ENSTTRP00000006775/1-849 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03919T0/1-974 RAFVVETQPC MPQTSHRPLI LKTGSKFTVR TRLLVRLQEG NESLTAEVSI BACU008136/1-879 RAFVVETQPC MPQTSHRPLI LKTGSKFTVR TRLLVRLQEG NESLTAEVSI 451 500 ENSP00000315768/1-851 DRNP------ ---PQLQG-- FRKFNILTSN QKTLTPEKGQ SQGLIWDFGY ENSBTAP00000005749/1-859 DRDS------ ---PKSQGNS FRKFNILTSN QKTLTPEKGQ TQGLIWDFGY ENSTTRP00000006775/1-849 XXN------- ---PESQG-- FRKFNILTSN QKTLTPEKGQ SQGLIWD--- bmy_03919T0/1-974 DRITLLLTSI YLLPPWNS-- FRKFNILTSN QKTLTPEKGQ SQGLIWDFGY BACU008136/1-879 DRNP------ ---PESQG-- FRKFNILTSN QKTLTPEKGQ SQGLIWDFGY 501 550 ENSP00000315768/1-851 LTLVEQRSGG SGKGSNKGPL GVTEELHIIS FTVKYTYQGL KQELKTDTLP ENSBTAP00000005749/1-859 LTLVEQRSGG SGKGNNKGLL SVTEELHIIS FTVKYTYQGL KQELTTDSLP ENSTTRP00000006775/1-849 -TLMEQRSGS SGKGSNKGLL AVTEELHIIS FTVRYTYQGL KQELKTDTLP bmy_03919T0/1-974 LTLVEQRSGG SGKGSNKGPL AVTEELHIIS FTVRYTYQGL KQELKTDTLP BACU008136/1-879 LTLVEQRSGG SGKGSNKGPL AVTEELHIIS FTVRYTYQGL KQELKTDTLP 551 600 ENSP00000315768/1-851 VVIISNMNQL SIAWASVLWF NLLSPNLQNQ QFFSNPPKAP WSLLGPALSW ENSBTAP00000005749/1-859 VVIISNMNQL SIAWASVLWF NLLSSNPQDQ QFFSNPPKAP WNLLGPALSW ENSTTRP00000006775/1-849 VVIISNMNQL SVAWASVLWF NLLSSDPQNQ QFFSSPAKAP WDLLGPALSW bmy_03919T0/1-974 VVIISNMNQL SIAWASVLWF NLLSSNPQNQ QFFSSPAKAP WDLLGPALSW BACU008136/1-879 VVIISNMNQL SIAWASVLWF NLLSSNPQNQ QFFSSPAKAP WDLLGPALSW 601 650 ENSP00000315768/1-851 QFSSYVGRGL NSDQLSMLRN KLFGQNCRTE DPLLSWADFT KRESPPGKLP ENSBTAP00000005749/1-859 QFSSYVNRGL DSDQLGMLRD KLFGHNSRTE GASLSWVDFI KRESPPGKLP ENSTTRP00000006775/1-849 QFSSYVGRGL NSDQLGMLRD KLFGQNSKTE GDLLSWVNFI KRESPPGKLP bmy_03919T0/1-974 QFSSYVGRGL DSDQLGMLRD KLFGQNSRTE GALLSWVHFI KRESPPGKLP BACU008136/1-879 QFSSYVGRGL DSDQLGMLRD KLFGQNSRTE GALLSWVHFI KRESPPGKLP 651 700 ENSP00000315768/1-851 FWTWLDKILE LVHDHLKDLW NDGRIMGFVS RSQERRLLKK TMSGTFLLRF ENSBTAP00000005749/1-859 FWTWLDKILD LIHDHLKDLW KDGRIMGFVS RNQVRRLLKK TVSGTFLLRF ENSTTRP00000006775/1-849 FWTWLDKILD LVHDHLKDLW NDGHIMGFVS RSQERRLMKK TISGTFLLRF bmy_03919T0/1-974 FWTWLDKILD LVHDHLKDLW NDG------- RSQERRLLKK TISGTFLLRF BACU008136/1-879 FWTWLDKILD LVHDHLKDLW NDGRIMGFVS RSQERRLLKK TISGTFLLRF 701 750 ENSP00000315768/1-851 SESSEGGITC SWVEHQDDDK VLIYSVQPYT KEVLQSLPLT EIIRHYQLLT ENSBTAP00000005749/1-859 SETLEGGITC SWVEHQDDDE VLINSVQPFT KEVLQSLPLT KIISQYQMLT ENSTTRP00000006775/1-849 SDTLEGGITC SWVEHQDDDK VLIYFVQPFT KEVLQSLPLA KIISQYQLLI bmy_03919T0/1-974 SETLEGGITC SWVEHQDDDK VLIYSVQPFT KEVLQSLPLT KIISQYQLLT BACU008136/1-879 SETLEGGITC SWVEHQDDDK VLIYSVQPFT KEVLQSLPLT KIISQYQLLT 751 800 ENSP00000315768/1-851 EENIPENPLR FLYPRIPRDE AFGCYYQEKV NLQERRKYLK HRLIVVSNRQ ENSBTAP00000005749/1-859 EENIPENPLR FLYPRIPRDE AFGCYSQEKI NPEERKKYLK HKLIFVSNRQ ENSTTRP00000006775/1-849 EENIPENPLC FLYPRIPRDE AFGRYSQEKV NLQERKKYLK HKLIVVSNRQ bmy_03919T0/1-974 EENIPENPLC FLYPRIPRDE AFGCYSQEKV NLQERKKYLK HKLIVVSNRQ BACU008136/1-879 EENIPENPLC FLYPRIPRDE AFGCYSQEKV NLQERKKYLK HKLIVVSNRQ 801 850 ENSP00000315768/1-851 VDELQQPLEL KPEPELESLE LELGLVPEPE L--SLDLEPL LKAGLDLGPE ENSBTAP00000005749/1-859 VDELQQLPEL KLEPELESLE LGLGFTSGPE HGPGLDLEPL LEAGLDL--- ENSTTRP00000006775/1-849 VDELQQLPEL KLEPELESFE LDLGLAPGPE PGPGLDLEPL LEAGLDLGPA bmy_03919T0/1-974 VDELQQLPEL KLEPELESLE LDLGLAPGPE PGPGLDLEPL LEAGLDLGPA BACU008136/1-879 VDELQQLPEL KLEPELESLE LDLGLAPGPE PGPGLGLEPL LEAGLDLGPA 851 900 ENSP00000315768/1-851 LESVLES--- ---------- ---------- -----TLEPV IEPTLCMVSQ ENSBTAP00000005749/1-859 ---SMEP--- ---------- ---------- -----MLEPT LEPTLGEVSQ ENSTTRP00000006775/1-849 LESVLES--- ---------- ---------- -----TLEPV LEPTLGEVSQ bmy_03919T0/1-974 LESTLEPVLE PTLEPVLEST LEPTLESTLE PTLESILEAT LEPTLGEVSQ BACU008136/1-879 LESTLEP--- ---------T LEPVLESILE PTLESILEPM LEPTLGEVSQ 901 950 ENSP00000315768/1-851 TVPEPDQG-- --------PV SQPVPEPDLP CDLRHLNTEP MEIFRNCVKI ENSBTAP00000005749/1-859 GVLEPHPGPQ LQLEPIPELE LQPMPEPDLP YDLRHLNTED MEIFRNSMRI ENSTTRP00000006775/1-849 RVPVPDLG-- --------PI SQPLPEPDLP HDLRHLNTED MEIFRNSMKM bmy_03919T0/1-974 RVPEPNLGPG LKLEPIPEPI SQPLPEPDLP HDLRHLNTED MEIFRNSRKI BACU008136/1-879 RVPEPNLGPG LKLEPIPEPI SQPLPEPDLP HDLRHLNTED MEIFRNSRKI 951 1000 ENSP00000315768/1-851 EEIMPNGDPL LAGQNTVDEV YVSRPSHFYT DGPLMPSDF ENSBTAP00000005749/1-859 EEIMPNGDPV LPCQNTMDEA DIFNPSHFYA DGPLSPSDY ENSTTRP00000006775/1-849 EEIMPNGDPL LAGQNTVDEA YVFPRSHFYT DGPLIPSDY bmy_03919T0/1-974 EEIMPNGDPL LAGQNTMDEA YVFPRSHFYT DGPLIPSDY BACU008136/1-879 EEIMPNGDPL LAGQNTMDEA YVFPRSHFYT DGPLIPSDY