KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:27 2014 Check: 00 .. Name: ENSP00000301458/1-282 Len: 282 Check: 6650 Weight: 1.00 Name: ENSBTAP00000005777/1-255 Len: 282 Check: 927 Weight: 1.00 Name: ENSTTRP00000009117/1-266 Len: 282 Check: 7434 Weight: 1.00 Name: bmy_11769T0/1-171 Len: 282 Check: 2624 Weight: 1.00 Name: BACU002531/1-236 Len: 282 Check: 5014 Weight: 1.00 // 1 50 ENSP00000301458/1-282 MSGGWMAQVG AWRTGALGLA LLLLLGLGLG LEAAASPLST PTSAQAAGPS ENSBTAP00000005777/1-255 -MNGWVARGL ARRAAALGLG LRVLLCFGLC LEIAPTPIQT WSPTQAPGPS ENSTTRP00000009117/1-266 AMSGWMAGGR AQRAAALGLA LRVLLSFGLG LEAAPTSIPA WSLTQAPGPS bmy_11769T0/1-171 -MSGWMARGR AQRAAALGLA LRVLLSFGLG LEGAPTSIPT WSLTQAPGPS BACU002531/1-236 -MSGWMARGR AQRAAALGLA LRVLLSFGLG LEAAPTSIPT WSLTQAPGPS 51 100 ENSP00000301458/1-282 SGSCPPTKFQ CRTSGLCVPL TWRCDRDLDC SDGSDEEECR IEPCTQKGQC ENSBTAP00000005777/1-255 AGSCPPTNFQ CRSDGRCLPL IWRCDVDQDC PDGSDEEECG TE-------- ENSTTRP00000009117/1-266 AASCPPTNFQ CRSDGLCVPL TWRCDVDKDC LDGSDEEECN TEPCAQDGQC bmy_11769T0/1-171 AASCPPTNFQ CRSDGRCVPL TWRCDVDQDC LDGSDEEECS IEPCAQDGQC BACU002531/1-236 TASCPPTNFQ CRSDGRCVPL TWRCDVDQDC VDGSDEEECS IEPCAQDGQC 101 150 ENSP00000301458/1-282 PPPPGLPCPC TGVSDCSGGT DKKLRNCSRL ACLAGELRCT LSDDCIPLTW ENSBTAP00000005777/1-255 -VPNGSPSPC DIMDDCPD-H NKNLLNCGPQ SCPEGELCCP LDGVCIPSTW ENSTTRP00000009117/1-266 KPPTGSPCSC DSIDDCPDGI NKNVLNCGHQ PCPEGELRCP LGGSCIPRTW bmy_11769T0/1-171 TPPTGSPCSC DSIDDCPDGI NKNVLNCGHQ PCPEGELRCP LGGSCIPRTW BACU002531/1-236 TPPTGSPCSC DSIDDCPDGI NKNVLNCGHQ PCPEGELRCP LGGSCIPRTW 151 200 ENSP00000301458/1-282 RCDGHPDCPD SSDELGCGTN EILPEGDATT MGPPVTLESV TSLRNATTMG ENSBTAP00000005777/1-255 LCDGHRDCSD YSDELGCGT- KTHEEGRTMS TGTPVTLENV TYLSNAT--- ENSTTRP00000009117/1-266 LCDGHPDCSD SSDELGCGT- KTLQEGSATS VGTPVTLESV TYLRNAT--- bmy_11769T0/1-171 LCDGHPDCSD SSDELGC--- ---------- ---------- ---------- BACU002531/1-236 LCDGHPDCSD SSDELGC--- ---------- ---------- ---------- 201 250 ENSP00000301458/1-282 PPVTLESVPS VGNATSSSAG DQSGSPTAYG VIAAAAVLSA SLVTATLLLL ENSBTAP00000005777/1-255 -------VTA IEDWDSV--- -QSGNRNVYG IIAAVAVLSI SLAAGILFAL ENSTTRP00000009117/1-266 -------VTS VGDQDSV--- -QSGNRSAYG IIAAAVVLSV GLAAAILFMW bmy_11769T0/1-171 ---------- ---------- ---------- ---------- ---------- BACU002531/1-236 -------VTS VGDRDSV--- -QSGNRSAYG IIAAAVVLSV GLAAAILFVL 251 300 ENSP00000301458/1-282 SWLRAQERLR PLGLLVAMKE SLLLSEQKTS LP ENSBTAP00000005777/1-255 SRLCAQGCLA PLGLLVSMKG S-LQPEKKTS VL ENSTTRP00000009117/1-266 SRLCAQGRLS PLGLLVSVKG S-LQSERTAS VL bmy_11769T0/1-171 ---------- --GLTIF--- ---------- -- BACU002531/1-236 SRLCAQGCLS PLGLLVSVKG S-LQSERTAS VL