KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:28 2014 Check: 00 .. Name: BACU018707/1-391 Len: 446 Check: 4536 Weight: 1.00 Name: ENSP00000348639/1-438 Len: 446 Check: 6132 Weight: 1.00 Name: ENSBTAP00000005785/1-441 Len: 446 Check: 6577 Weight: 1.00 Name: bmy_21021T0/1-294 Len: 446 Check: 795 Weight: 1.00 Name: ENSTTRP00000002884/1-251 Len: 446 Check: 1326 Weight: 1.00 // 1 50 BACU018707/1-391 ---------- ---YNISSQR SWPLWMTILI FLGVMTV--- --LAVGLLVH ENSP00000348639/1-438 MMYAPVEFSE AEFSRAEYQR KQQFWDSVRL ALFTLAIVAI IGIAIGIVTH ENSBTAP00000005785/1-441 HYHRPLECSQ ANYPQVEYQR RQQCWGPISL SLFTLAIIAI IGIAIGIVTH bmy_21021T0/1-294 ---------- ---------- ---------- ---------M VKFTSQGLNY ENSTTRP00000002884/1-251 ---------- ---------- ---------- ---------- ---------- 51 100 BACU018707/1-391 F-LAVGKTYY YQGDFHISGV TYNDNCGKAV SQVSTDLSKY IETKMSDAFQ ENSP00000348639/1-438 FVVEDDKSFY YLASFKVTNI KYKENYGIRS SREFIERSHQ IERMMSRIFR ENSBTAP00000005785/1-441 FVVEDDKSFY YLASFKATNI KYRECYGIRT SKQFIERSHQ IERMMSRIFQ bmy_21021T0/1-294 LELYNDKPFY YLASFKVTNI KYKENYGIRT SREFKERSHQ IERMMSRTFQ ENSTTRP00000002884/1-251 ---------- ---------- ---------- ---------- ---------- 101 150 BACU018707/1-391 NSGVYKEYIY SQVMFDGGVM PDENGVNILM VLMFQHPSTD RAEQIRTKIE ENSP00000348639/1-438 HSSVGGRFIK SHVI---KLS PDEQGVDILI VLIFRYPSTD SAEQIKKKIE ENSBTAP00000005785/1-441 HSG-EGRFIK SHVI---KLS PDQNGMNIHM VLVFRFPSTD SAEQVRKKIE bmy_21021T0/1-294 HSSREGWFIK SHVI---KLR PDENGVNILM VLMCQHPSTD SAEQIRTKIE ENSTTRP00000002884/1-251 ---------- ---------- ---------- ---------- ---------- 151 200 BACU018707/1-391 RILYQSLKTK QLPLTVNKPS ITLT------ ---------- ---------- ENSP00000348639/1-438 KALYQSLKTK QLSLTINKPS FRLTPIDSKK MRNLLNSRCG IRMTSSNMPL ENSBTAP00000005785/1-441 RILYQSLKRE PMPLTIYKPS FTLTPIDNKK MRNFLNSRCG IRMTPSYMPL bmy_21021T0/1-294 RILYQSLKTK QLPLTVNKPS FTLT------ -------YCG IRMTSSYMPL ENSTTRP00000002884/1-251 ---------- ---------- ---------- --------CG IRMTSSYMPL 201 250 BACU018707/1-391 -SSSSTERVV QESETAMEGQ WPWQASLQLI GAGHQCGASL ISNTWLLTAA ENSP00000348639/1-438 PASSSTQRIV QGRETAMEGE WPWQASLQLI GSGHQCGASL ISNTWLLTAA ENSBTAP00000005785/1-441 PAFASTERIV QGSEAALEGE WPWQASLQLI GAGHQCGASL ISNTWLLTAA bmy_21021T0/1-294 SASSSTERVV QGSETAMEGE WPWQASLQLI GAGHQCGASL ISNTWLLTAA ENSTTRP00000002884/1-251 PASSSTERVV QGSETAMEGE WPWQASLQLI GAGHQCGASL ISNTWLLTAA 251 300 BACU018707/1-391 HCFRKHKDPS QWIATFGTTI TPPAVQRSVR KITFHENYHR ETNENDIALA ENSP00000348639/1-438 HCFWKNKDPT QWIATFGATI TPPAVKRNVR KIILHENYHR ETNENDIALV ENSBTAP00000005785/1-441 HCFRRNKDPN RWIVTFGITI TPPAVKRSLR KIIIHENYRK ETNENDIALA bmy_21021T0/1-294 HCFRK----- ---------- ---------- ---------- ETNENDIALA ENSTTRP00000002884/1-251 HCFRKHKDPS QWIATFGTTI TPPAVQRSVR KITFHENYHR ETNENDIALA 301 350 BACU018707/1-391 QLATRVEFSI VV-RVCLPDS SIKLLSKTSV FVTGFGSIVD D----GPTQN ENSP00000348639/1-438 QLSTGVEFSN IVQRVCLPDS SIKLPPKTSV FVTGFGSIVD D----GPIQN ENSBTAP00000005785/1-441 QLDTRVEFSN VVQRVCLPDS SIKLPPKTGV FVTGFGSIVD DVWVIGPTQN bmy_21021T0/1-294 QLATRVEFSN VV-----QNS SIKLLSKTSV FITGFGSIVD D----GPTQN ENSTTRP00000002884/1-251 -LATRVEFSN VV-RVCLPDS SIKLPSKTSV LVTRFGSIVD D----GPTQN 351 400 BACU018707/1-391 RLQQARVETI STDVCNRKDV YDGLINSGML CAGFMDGKVD AC--DSGGPL ENSP00000348639/1-438 TLRQARVETI STDVCNRKDV YDGLITPGML CAGFMEGKID ACKGDSGGPL ENSBTAP00000005785/1-441 KLRQARVETI STEVCNRKDV YDGMITSGML CAGFMEGKVD ACKGDSGGPL bmy_21021T0/1-294 RLQQARVETI STDVCNRKDV YDGLITSGML CAGFMDGKVD A--------- ENSTTRP00000002884/1-251 RLQQARVETI STDVCNRKDV YDGLITSGML CAGFMDGKVD VCKGDCGGPL 401 450 BACU018707/1-391 VIARDRNIWY LIGIVSCGMD CGKENKPGVY TKVTRYQDWL KSKT-- ENSP00000348639/1-438 VYD-NHDIWY IVGIVSWGQS CALPKKPGVY TRVTKYRDWI ASKTGM ENSBTAP00000005785/1-441 VYD-NHEIWY LVGIVSWGQS CALPKKPGVY TRVSQYRNWI ASKTGI bmy_21021T0/1-294 ---------Y V--------- ---------- ---------- ------ ENSTTRP00000002884/1-251 VYD-NHDIWY LVSIVSWGQS CALPKKPGVY TRVSQYRGWI ASKTGI