KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:28 2014 Check: 00 .. Name: ENSTTRP00000014918/1-526 Len: 662 Check: 3533 Weight: 1.00 Name: ENSBTAP00000005786/1-612 Len: 662 Check: 6334 Weight: 1.00 Name: BACU017789/1-632 Len: 662 Check: 7815 Weight: 1.00 Name: bmy_09242T0/1-652 Len: 662 Check: 4964 Weight: 1.00 Name: ENSP00000369318/1-611 Len: 662 Check: 6876 Weight: 1.00 // 1 50 ENSTTRP00000014918/1-526 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005786/1-612 ---------- ---------- --SIHIVALG NEGDAFHQDS RPSGLIRAYL BACU017789/1-632 MKGSLALTTR LFSPSPPSLP CRSIHIVALG NEGDAFHQDN RPSGLIRTYL bmy_09242T0/1-652 --------MR LLRSRCTSST GRSIHIVALG NEGDAFHQDN RPSGLIRTYL ENSP00000369318/1-611 ---------- ---------- -MSIHIVALG NEGDTFHQDN RPSGLIRTYL 51 100 ENSTTRP00000014918/1-526 ---------- ---------- ---------- ---------- -------DIF ENSBTAP00000005786/1-612 GRSPLVSGDE SSLLLSASGA AARPVFTEYQ ASAFGNVKLV VHDCPVWDIF BACU017789/1-632 GRSPLVSGDE SSLLLNATST VARPVFTEYQ ASAFGNVKLV VHDCPVWDIF bmy_09242T0/1-652 GRSPLVSGDE SSLLLNATST VARPVFTEYQ ASAFGNVKLV VHDCPVWDIF ENSP00000369318/1-611 GRSPLVSGDE SSLLLNAAST VARPVFTEYQ ASAFGNVKLV VHDCPVWDIF 101 150 ENSTTRP00000014918/1-526 DSDWYTSRNL IGGADIIVIK YNVNDKFSFH EVKDNYIPVI KRALNSVPVI ENSBTAP00000005786/1-612 DSDWYTSRNL IGGADIIVIK YNVNDKFSFH EVKDNYIPVI KRALNSVPVI BACU017789/1-632 DSDWYTSRNL IGGADIIVIK YNVNDKFSFH EVKDNYIPVI KRALNSVPVI bmy_09242T0/1-652 DSDWYTSRNL IGGADIIVIK YNVNDKFSFH EVKDNYIPVI KRALNSVPVI ENSP00000369318/1-611 DSDWYTSRNL IGGADIIVIK YNVNDKFSFH EVKDNYIPVI KRALNSVPVI 151 200 ENSTTRP00000014918/1-526 IAAVGTRQNE ELPCTCPLCT SDRGSCVSTT EGIQLAKELG ATYLELHSLD ENSBTAP00000005786/1-612 IAAVGTRQNE ELPCTCPLCT SDRGSCVSTT EGIQLAKELG ATYLELHSLD BACU017789/1-632 IAAVGTRQNE ELPCTCPLCT SDRGSCVSTT EGIQLAKELG ATYLELHSLD bmy_09242T0/1-652 IAAVGTRQNE ELPCTCPLCT SDRGSCVSTT EGIQLAKELG ATYLELHSLD ENSP00000369318/1-611 IAAVGTRQNE ELPCTCPLCT SDRGSCVSTT EGIQLAKELG ATYLELHSLD 201 250 ENSTTRP00000014918/1-526 DFYIGKYFGG VLEYFMIQAL NQKTSEKMKK RKMSNSFHGI RPPQLEQP-- ENSBTAP00000005786/1-612 DFYIGKYFGG VLEYFMIQAL NQKTSEKMKR RKMSNSFHGI RPPQLEQPET BACU017789/1-632 DFYIGKYFGG VLEYFMIQAL NQKTSEKMKK RKMSNSFHGI RPPQLEQP-- bmy_09242T0/1-652 DFYIGKYFGG VLEYFMIQAL NQKTSEKMKK RKMSNSFHGI RPPQLEQP-- ENSP00000369318/1-611 DFYIGKYFGG VLEYFMIQAL NQKTSEKMKK RKMSNSFHGI RPPQLEQP-- 251 300 ENSTTRP00000014918/1-526 EKMPVLKAEA SHYNADLNNL LFCCQCVDVV FYNPDLKEVA EAHKIVLCAV ENSBTAP00000005786/1-612 EKMPVLKAEA SHYNADLNNL LFCCQCVDVV FYSPDLKEVA EAHKIVLCAV BACU017789/1-632 EKMPVLKAEA SHYNADLNNL LFCCQCVDVV FYNPDLKEVA EAHKIVLCAV bmy_09242T0/1-652 EKMPVLKAEA SHYNADLNNL LFCCQCVDVV FYNPDLKEVA EAHKIVLCAV ENSP00000369318/1-611 EKMPVLKAEA SHYNSDLNNL LFCCQCVDVV FYNPNLKKVV EAHKIVLCAV 301 350 ENSTTRP00000014918/1-526 SHVFMLLFNV KSPADIQDSS IIRTTQDLFA INRDPAFPGA SQESPGNPPL ENSBTAP00000005786/1-612 SHVFMLLFSV KSPADIQDSS IIQTTQDLFT INRDPAFPGA SQESLGNPPL BACU017789/1-632 SHVFMLLFNV KSPADIQDSS IIRTTQDLFA INRDPAFPGA SQESPGNPPL bmy_09242T0/1-652 SHVFMLLFNV KSPADIQDSS IIRTTQDLFA INRDPAFPGA SQESPGNPPL ENSP00000369318/1-611 SHVFMLLFNV KSPTDIQDSS IIRTTQDLFA INRDTAFPGA SHESSGNPPL 351 400 ENSTTRP00000014918/1-526 RVIVKDALFC SCLSDILRFI YSGAFQWEEL EEDIRKKLKD SGDVSNVIEK ENSBTAP00000005786/1-612 RVIVKDAFFC SCLSDILRFI YSGAFQWEEL EDDIRKKLKD SGDVSNVIEK BACU017789/1-632 RVIVKDALFC SCLSDILRFI YSGAFQWEEL EEDIRKKLKD SGDVSNVIEK bmy_09242T0/1-652 RVIVKDALFC SCLSDILRFI YSGAFQWEEL EEDIRKKLKD SGDVSNVIEK ENSP00000369318/1-611 RVIVKDALFC SCLSDILRFI YSGAFQWEEL EEDIRKKLKD SGDVSNVIEK 401 450 ENSTTRP00000014918/1-526 VKCILKTPGK ---------- ---------- --------FN CLRNCKTYQA ENSBTAP00000005786/1-612 VKCILKTPGK ---------- ---------- --------FN CLRNCKTYQA BACU017789/1-632 VKCILKTPGK ---------- ---------- --------FN CLRNCKTYQA bmy_09242T0/1-652 VKCILKTPGK LTKARGDSGP RSFSAVESSF HLASSFTAFN CLRNCKTYQA ENSP00000369318/1-611 VKCILKTPGK ---------- ---------- --------IN CLRNCKTYQA 451 500 ENSTTRP00000014918/1-526 RKPLWFYNTS LKFFLNKPML ADVVFEIQGT TVPAHRAVLV ARCEVMAAMF ENSBTAP00000005786/1-612 RKPLWFYNTS LKFFLNKPML ADVVFEIQGT TVPAHRAILV ARCEVMAAMF BACU017789/1-632 RKPLWFYNTS LKFFLNKPML ADVVFEIQGT TVPAHRAVLV ARCEVMAAMF bmy_09242T0/1-652 RKPLWFYNTS LKFFLNKPML ADVVFEIQGT TVPAHRAVLV ARCEVMAAMF ENSP00000369318/1-611 RKPLWFYNTS LKFFLNKPML ADVVFEIQGT TVPAHRAILV ARCEVMAAMF 501 550 ENSTTRP00000014918/1-526 NGNYMEAKSV LIPVYGVSKE TFLSFLEYLY TDSCCPAGIF QAMCLLICAE ENSBTAP00000005786/1-612 NGNYMEAKSV LIPVYGVSKE TFLSFLEYLY TDSCCPAGIF QAMCLLICAE BACU017789/1-632 NGNYMEAKSV LIPVYGVSKE TFLSFLEYLY TDSCCPAGIF QAMCLLICAE bmy_09242T0/1-652 NGNYMEAKSV LIPVYGVSKE TFLSFLEYLY TDSCCPAGIF QAMCLLICAE ENSP00000369318/1-611 NGNYMEAKSV LIPVYGVSKE TFLSFLEYLY TDSCCPAGIF QAMCLLICAE 551 600 ENSTTRP00000014918/1-526 MYQVSRLQHI CELFIITQLQ SMPSRELASM NLDIVDLLKK AKXXXXXXXX ENSBTAP00000005786/1-612 MYQVSRLQHI CELFIITQLQ SMPSRELASM NLDIVDLLKK AKFHHSDCLS BACU017789/1-632 MYQVSRLQHI CELFIITQLQ SMPSRELASM NLDIVDLLKK AKFHHSDCLS bmy_09242T0/1-652 MYQVSRLQHI CELFIITQLQ SMPSRELASM NLDIVDLLKK AKFHHSDCLS ENSP00000369318/1-611 MYQVSRLQHI CELFIITQLQ SMPSRELASM NLDIVDLLKK AKFHHSDCLS 601 650 ENSTTRP00000014918/1-526 XX--XXXXXX XXXXXXXXXX XXXXXXXRRS LEKHRWPSNM Y-----EQAY ENSBTAP00000005786/1-612 TWLLHFIATN YLIFSQKPEF QDLSVEERSF VEKHRWPSTM YLKQLAEYRK BACU017789/1-632 TWLLHFIATN YLIFSQKPEF QDLSVEERSF VEKHRWPSNM YLKQLAEYRK bmy_09242T0/1-652 TWLLHFIATN YLIFSQKPEF QDLSVEERSF VEKHRWPSNM YLKQLAEYRK ENSP00000369318/1-611 TWLLHFIATN YLIFSQKPEF QDLSVEERSF VEKHRWPSNM YLKQLAEYRK 651 700 ENSTTRP00000014918/1-526 YIHSR-CR-L VY ENSBTAP00000005786/1-612 YIHSRKCRCL VM BACU017789/1-632 YIHSRKCRCL VM bmy_09242T0/1-652 YIHSRKCRCL VM ENSP00000369318/1-611 YIHSRKCRCL VM