KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:29 2014 Check: 00 .. Name: ENSTTRP00000012336/1-485 Len: 637 Check: 5127 Weight: 1.00 Name: BACU004035/1-489 Len: 637 Check: 7884 Weight: 1.00 Name: ENSP00000355893/1-485 Len: 637 Check: 8471 Weight: 1.00 Name: bmy_17010T0/1-569 Len: 637 Check: 8909 Weight: 1.00 Name: ENSBTAP00000005787/1-486 Len: 637 Check: 9646 Weight: 1.00 // 1 50 ENSTTRP00000012336/1-485 ---------- ---------- ---------- ---------- ---------- BACU004035/1-489 ---------- ---------- ---------- ---------- ---------- ENSP00000355893/1-485 ---------- ---------- ---------- ---------- ---------- bmy_17010T0/1-569 MTGGTGEKGS SGEHRLCLGG VCDECHPGTP PLFGSSPLCP LPSLEGQTLA ENSBTAP00000005787/1-486 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012336/1-485 ---------- ---------- ---------- ---------- ---------- BACU004035/1-489 ---------- ---------- ---------- ---------- ---------- ENSP00000355893/1-485 ---------- ---------- ---------- ---------- ---------- bmy_17010T0/1-569 RGHVPREAEP RGRGRGRGGG ERSLRYGRPA LPLDSGRAGP GPLGLRLRLI ENSBTAP00000005787/1-486 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012336/1-485 ---------- ---------- ---------- -------MGR YSGKTCRLLF BACU004035/1-489 ---------- ---------- ---------- -------MGR YSGRSFRLIL ENSP00000355893/1-485 ---------- ---------- ---------- -------MGR YSGKTCRLLF bmy_17010T0/1-569 RSPGAGGQGG PGGGDQATAE SRAPRPTCGG GTIGRAGMGR YSGKTCRLLF ENSBTAP00000005787/1-486 ---------- ---------- ---------- -------MGR YSGKTCRLLF 151 200 ENSTTRP00000012336/1-485 MLVLTIAFFV AELVSGYLGN SIALLSDSFN MLSDLISLCV GLSAGYIARR BACU004035/1-489 MCVVSVLLFV MELVISHIGN SLSLASDAFA VLSHLISMII GLF-GVRASS ENSP00000355893/1-485 MLVLTVAFFV AELVSGYLGN SIALLSDSFN MLSDLISLCV GLSAGYIARR bmy_17010T0/1-569 MLVLTVAFFV AELVSGYLGN SIALLSDSFN MLSDLISLCV GLSAGYIARR ENSBTAP00000005787/1-486 MLVLTVAFFV AELVSGYLGN SIALLSDSFN MLSDLISLCV GLSAGYIARR 201 250 ENSTTRP00000012336/1-485 PRGSLSATYG YARAEVVGAL GNAVFLTALC FTIFVEAVLR LARPERIDDP BACU004035/1-489 IKQHRKSTFG FLRADVVGAF GNSIFAVALM FGILVEAVKR YIEPQKTEAP ENSP00000355893/1-485 PTRGFSATYG YARAEVVGAL SNAVFLTALC FTIFVEAVLR LARPERIDDP bmy_17010T0/1-569 PRGGLSATYG YARAEVVGAL GNAVFLTALC FTIFVEAVLR LARPERIDDP ENSBTAP00000005787/1-486 PRGGLGATYG YARAEVVGAL SNAVFLTALC FTIFVEAVLR LARPERIDDP 251 300 ENSTTRP00000012336/1-485 ELVLIVGALG LAVNVVGLLI FRDCAA---- WFACC----- ------GRRR BACU004035/1-489 LLVLSAGVIG LLFNVLNYVI FLDCCY---- ---CAAPGPQ GDAETARRRR ENSP00000355893/1-485 ELVLIVGVLG LLVNVVGLLI FQDCAA---- WFACCLRG-- ------RSRR bmy_17010T0/1-569 ELVLIVGALG LAVNVVGLLI FQDCAACPLV LFVC------ --------RT ENSBTAP00000005787/1-486 ELVLIVGALG LAVNVVGLLI FQDCAA---- WFACC--G-- ------RRRR 301 350 ENSTTRP00000012336/1-485 RQQKRQQQPA AGGGPRGVFP GPQGAEGRWH AAALPAPGRD SAVTLRVASV BACU004035/1-489 RQQQRHQQPA AGGGPRGVFP GPQGAEGRWH AAALPAPGRD SAVTLRVASV ENSP00000355893/1-485 LQQR---QQL AEGCVPGAFG GPQGAEDPRR AADPTAPGSD SAVTLRGTSV bmy_17010T0/1-569 YTQH------ ---------- ---------- ---------- -----KVSSL ENSBTAP00000005787/1-486 LQQQQHPQPA AGVGSRGAFG DPQGAECGWH AGALPTPGRD SAVTLRASSV 351 400 ENSTTRP00000012336/1-485 DRKDEKGATV FSNVAGDSLT TQNEPEETMK KEKKSEALNI RXXXXXXXXX BACU004035/1-489 D---EKGATV FSNVAGDSLT TQNEPEETMK KEKKSEALNI RGVLLHVMGD ENSP00000355893/1-485 ERKREKGATV FANVAGDSFN TQNEPEDMMK KEKKSEALNI RGVLLHVMGD bmy_17010T0/1-569 N--------- ----AGDSLT TQNEPEETMK KEKKSEALNI RGVLLHVMGD ENSBTAP00000005787/1-486 DRKDEKGATV FSNVAGDSLN TQNEPEETMK KEKKSEALNI RGVLLHVMGD 401 450 ENSTTRP00000012336/1-485 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU004035/1-489 ALGSVVVVIT AIIFYVLPLK HEDPCNWQCY IDPSLTVIMV IIILSSAFPL ENSP00000355893/1-485 ALGSVVVVIT AIIFYVLPLK SEDPCNWQCY IDPSLTVLMV IIILSSAFPL bmy_17010T0/1-569 ALGSVVVVIT AIIFYVLPLK HEDPCNWQCY IDPSLTVIMV IIILSSAFPL ENSBTAP00000005787/1-486 ALGSVVVVIT AIIFYVLPLK REDPCNWQCY IDPSLTVVMV IIILSSAFPL 451 500 ENSTTRP00000012336/1-485 XXXXXXXXXX XXXXXXXXXX XXSKLSAVPG ISSVHEVHIW ELISGKIIAT BACU004035/1-489 IKETAAILLQ MVPKSVNMEE LMSKLSAVPG ISSVHEVHIW ELISGKIIAT ENSP00000355893/1-485 IKETAAILLQ MVPKGVNMEE LMSKLSAVPG ISSVHEVHIW ELVSGKIIAT bmy_17010T0/1-569 IKETAAILLQ MVPKNVNMEE LMSKLSAVPG ISSVHEVHIW ELISGKIIAT ENSBTAP00000005787/1-486 IKETAAILLQ MVPKGVNMEE LMSKLSAVPG ISSLHEVHIW ELISGKIIAT 501 550 ENSTTRP00000012336/1-485 LHIKYQQDGE DQDASTKIRE IFHNTGIHNV TIQFEKVDLK GPLGQKDLQL BACU004035/1-489 LHIKYQQDGG DRDASIKIRE IFHNTGIHNV TIQFEKVDLK GPLEQKDLQL ENSP00000355893/1-485 LHIKYPKDRG YQDASTKIRE IFHHAGIHNV TIQFENVDLK EPLEQKDLLL bmy_17010T0/1-569 LHIKYQQDGG DRDASIKIRE IFHNTGIHNV TIQFEKVDVK GPLEPKDVQL ENSBTAP00000005787/1-486 LHIKCQQDGG DQDANRKIRE IFHNAGIHSV TIQFEKADLK EPLEQKDLQL 551 600 ENSTTRP00000012336/1-485 LCSSPCISKG CTKQLCCPPG ALPLAHVNGC AEHNGCPPLD LSRSDGLGRR BACU004035/1-489 LCSSPCISKG CSKQLCCPPG ALPLAHINGC AEHNGCPPLD LSRSDGLGRR ENSP00000355893/1-485 LCNSPCISKG CAKQLCCPPG ALPLAHVNGC AEHNGGPSLD TYGSDGLSRR bmy_17010T0/1-569 LCSSPCISKG CSKQLCCPPG ALPLAHVNGC AEHNGCPPLD LSRSDGLGRR ENSBTAP00000005787/1-486 LCSSPCIAKS CAKQLCCPPG ALPLAHVNGC AEHNGCPPLD MSQGDVLRRR 601 650 ENSTTRP00000012336/1-485 QTAEVALEVS LEGCLSDHGQ ALSKSQEDSR YVNSTHF BACU004035/1-489 QTAEVALEVS LEGCLSDHGQ ALSKSQEDSR YINSTHF ENSP00000355893/1-485 DAREVAIEVS LDSCLSDHGQ SLNKTQEDQC YVNRTHF bmy_17010T0/1-569 QTAEVALEVS LEGCLSDHGQ ALSKSQEDSR YINSTHF ENSBTAP00000005787/1-486 QTTEVAIEVS LEGCLTDHGQ ALGKPQEDSR YVNSTHF