KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:30 2014 Check: 00 .. Name: ENSP00000396976/1-780 Len: 1333 Check: 4996 Weight: 1.00 Name: ENSBTAP00000005794/1-779 Len: 1333 Check: 3951 Weight: 1.00 Name: ENSTTRP00000010031/1-777 Len: 1333 Check: 6071 Weight: 1.00 Name: BACU008533/1-1252 Len: 1333 Check: 8956 Weight: 1.00 Name: bmy_00642T0/1-776 Len: 1333 Check: 2290 Weight: 1.00 // 1 50 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 MATVAWLLGR RVASWRPRPP LQPLAGLTTQ RANSLLPVDD AINGLREEQK bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 QLRQTMAKFL QEHLAPHAQE IDRSNEFKNL REFWKQLGNL GVLGLTAPXQ bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 YGGSGLGYLE HVLVMEEISR VSGAVGLSYG AHSNLCLNQI VRNGNEAQKE bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 KYLPKLISGE YVGALAMSET NAGSDVVSMK LKAEKKGDHY VLNGNKFWIT bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 NGPDADVLIV YAKTDLAAVP ASRGITAFIV EKGMPGFSTS KKLDKLGMRG bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 SNTCELIFED CEVPAANILG HQSKGVYVLM SGLDLERLVL AGGPLGIMQA bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 ILDHAIPYLH VREAFGQKIG HFQLMQGKMA DMYTRLMACR QYVYNVAKAC bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 DEGYCTAKDC AGVILYSAEC ATQVALDGIQ CLGGNGYIND FPMGRFLRDA bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 KLYEIGAGTS ELLDPDNPVP VTRLRRARFP KTGLGAGSGR ARGARLAAKR bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 RTKAAPERAQ VVASGRGAGP SHPPRGEGDR AGLCPRDCGG RDDRREELRH bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000396976/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005794/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010031/1-777 ---------- ---------- ---------- ---------- ---------- BACU008533/1-1252 WFTAAVSDHL AVLGRVGSTQ WGRGGGVHMV GLVGGDRVAG LTRRESAWRY bmy_00642T0/1-776 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000396976/1-780 -MTHTRRKSL PMLSSGLTGR REPLQMEDSN MEQGVEGVEP GMPESPGHLT ENSBTAP00000005794/1-779 -MTHTRRKSL PMLSSGPTGR QEPLQMEGSS VEQRAEGVEP GPPESSEHLT ENSTTRP00000010031/1-777 -MTHTRRKSL SMLSSGPTGR QEPLQMEGSS MEQGAEGVEP GPPESPGHLM BACU008533/1-1252 SMTHTRRKSL PMLSSGPTGR QEPLQMEGSS MEQGAEGVEP GPPESPGHLT bmy_00642T0/1-776 -MTHTRRKSL PMLSSGPTGR QEPLQMEGSS MEQGAEGVEP GPPESPGHLT 601 650 ENSP00000396976/1-780 GRRKNYPLRK RPLVPEKPKA CKVLLTRLEN VAGPRSADEA DELPPDLPKP ENSBTAP00000005794/1-779 GRRKNYPLRK RPLVPEKPKT CKVLLTRLEN VAGPRSADEA DELPPDLPKP ENSTTRP00000010031/1-777 GRRKNYPLRK RPLIPEKPKA C-VLLTRLEN VAGPRSADEA DELPPDLPKP BACU008533/1-1252 GRRKNYPLRK RPLIPEKPKA CKVLLTCLEN VAGPRSADEA DELPPDLPKP bmy_00642T0/1-776 GRRKNYPLRK RPLIPEKPKA CKVLLTRLEN VAGPRSADEA DELPPDLPKP 651 700 ENSP00000396976/1-780 PSPAPSSEDP GLAQPRKRRL ASLNAEALNN LLLEREDTSS LAGTRRSRAG ENSBTAP00000005794/1-779 PSPTPSSEDT ALSQPRKRRL ASLNAEALNN LLLEREETSS LVGTRRSRGG ENSTTRP00000010031/1-777 PSPAPSSEDT GLPQPRKRRL ASLNAEALNN LLLEREETSS LMGTRRSRGG BACU008533/1-1252 PSPAPSSEDT GLPQPRKRRL ASLNAEALNN LLLEREETSS LMGTRRSRGG bmy_00642T0/1-776 PSPAPSSEDT GLPQPRKRRL ASLNAEALNN LLLEREETSS LMGTRRSRGG 701 750 ENSP00000396976/1-780 DPHRSRDRDR ATGGWSSSKK RPRLGDLGGG SRDLSPEPAP DEGPRRDGDP ENSBTAP00000005794/1-779 DPHRSRDRDR ATGGWASSKK RPRLGNLGEG SRDLSPEPAP DEGARRDGDP ENSTTRP00000010031/1-777 DPHRSRDRDR ATGGWASSKK RPRLGDLG-G SRDLSPEPAP DEGARRDGDP BACU008533/1-1252 DPHRSRDRDR ATGGWASSKK RPRLGDLGGG SRDLSPEPAP DEGARRDGDP bmy_00642T0/1-776 DPHRSRDRDR ATGGWASSKK RPRLGDLGGG SRDLSPEPAP DEGARRDGDP 751 800 ENSP00000396976/1-780 APKRLASLNA AAFLKLSQER ELPLRLPRAH AEVDGRSTEP PAPKAPRPKW ENSBTAP00000005794/1-779 TPKRLASLNA AAFLKLSQER ELPLRPPRAH PEADGHSAEP PAPKGLRPKW ENSTTRP00000010031/1-777 TPKRLASLNA AAFLKLSQER ELPLRPPRAH PEADGHSTEP PALRAPRPKW BACU008533/1-1252 APKRLASLNA AAFLKLSQER ELPLRPPRAH PEADGHSTEP PALRAPRPKW bmy_00642T0/1-776 APKRLASLNA AAFLKLSQER ELPLRPPRAH PEADGHSTEP PALRAPRPKW 801 850 ENSP00000396976/1-780 PKVNGKNYPK AWQGAS-SGE AAGPPGWQGC PDEPWPSATP CGPSVQPSHQ ENSBTAP00000005794/1-779 AKVNSKNYPK ARQGAGSSGE AAGPPGWQGC PEEPWPSSPP RGPASQPLYQ ENSTTRP00000010031/1-777 AKVNGKNYPK ARQGAG-SGE AAGPPGWQGY PEEPWPSATP RGPSSQPPYQ BACU008533/1-1252 AKVNGKNYPK ARQGAG-SGE AAGPPSWQGH PEEPWPSTTP RGPSSQPPYQ bmy_00642T0/1-776 AKVNGKNYPK ARQGAG-SGE AAGPPGWQGH PEEPWPSATP RGPSSQPPYQ 851 900 ENSP00000396976/1-780 PLSKALESPL GLRPHLPLLM GGQAALKPEP GRPGEESPAP KQELHQPSFP ENSBTAP00000005794/1-779 PLSKALESPL GLRPQLPLLM GGQAALKPEP GRPGEESPAP KQELHQPSFP ENSTTRP00000010031/1-777 PLSEALESPL GLRPHLPLLM GGQAALKPEP GRPGEESPAP KQELHQPSFP BACU008533/1-1252 PLSEALESPL GLRPHLPLLM GGQAALKPEP GRPGEESPAP KQELHQPSFP bmy_00642T0/1-776 PLSEALESPL GLRPHLPLLM GGQAALKPEP GRPGEESPAP KQELHQPSFP 901 950 ENSP00000396976/1-780 TPQLSPLPMP GNPADYNGLC VGPELTALGS FYLYCGQEGL QCGGYSPCPM ENSBTAP00000005794/1-779 TPQLSPLPMP GNPADYNGLY GRPELTALGN FYLYCSQDRL QCGGYSSCPM ENSTTRP00000010031/1-777 APQLSPLPMP GNPADYSGLC GGPELTALRS FYLYCSQAGL RCGGYPSCSV BACU008533/1-1252 APQLSPLPMP GNPADYSGLC GGPELTALGS FYLYCSQAGL RCGGYSSCSV bmy_00642T0/1-776 APQLSPLPMP GNPADYSGLC GGPELTALGS FYLYCSQAGL RCGGYSSCTV 951 1000 ENSP00000396976/1-780 LPEGKLSPVA APHEEGLLLA PSSVPS-GTP FQHPPWGSSR YCSSEDTGVN ENSBTAP00000005794/1-779 LPEGKLSPVA APN-EGLLLA PSSVPA-GTP FQHPPWG-SR YCPDEDTGAN ENSTTRP00000010031/1-777 LPEDKLSPVA AAN-AGLLLA PSSVPATGTH FQHPPWG-SR YCSSEDTGVN BACU008533/1-1252 LPEGKLSPVA AAN-AGLLLA PSSVPAAGTH FQHPPWG-SR YCSSEDTGVN bmy_00642T0/1-776 LPEGKLSPVA AAN-TGLLLA PSSVPAAGTH FQHPPWG-SR YCSSEDTGVN 1001 1050 ENSP00000396976/1-780 GYSICGVLPL SVTHAGTTCG GCPYKMPFAA EGCRSLGQLE FPLPEAGHPA ENSBTAP00000005794/1-779 GYSICEMLST SLTHIGTTCG GCPYKMPFAA EGCRSLGQLE FPLPAAGHPA ENSTTRP00000010031/1-777 GYSICEMLPP SLTHIGTTCG GCPYKMPFAA EGCRSLGQLE FPLPEAGHPA BACU008533/1-1252 GYSICEMLPP SLTHIGTTCG GCPYKMPFAA EGCRSLGQLE FPLPEAGHPA bmy_00642T0/1-776 GYSICEMLPP SLTHIGTTCG GCPYKMPFAA EGCRSLGQLE FPLPEAGHPA 1051 1100 ENSP00000396976/1-780 SPAHPLLGCP VPSVPPAAEP VPHLQTPTSE PQTVARACPQ SAKPPSGSKS ENSBTAP00000005794/1-779 SPAHPLLGCP VPSVPPAAEP VPHLQTPTSE PQTVARACPQ SAKPPSGSKS ENSTTRP00000010031/1-777 SPAHPLLGCP VPSVPPAAEP VPHLQTPTSE PQTVARACPQ SAKPPSGSKS BACU008533/1-1252 SPAHPLLGCP VPSVPPAAEP VPHLQTPTSE PQT------- ---------- bmy_00642T0/1-776 SPAHPLLGCP VPSVPPAAEP VPHLQTPTSE PQTVARACPQ SAKPPSGSKS 1101 1150 ENSP00000396976/1-780 GLRTGSSCRH TARSKAARRP SHPKQPRVQR PRPRRRRRRR TNGWVPVGAA ENSBTAP00000005794/1-779 GLRTGSSCRH TARSKAARRP SHPKQPRVQR PRPRRRRRRR TNGWVPVGAA ENSTTRP00000010031/1-777 GLRTGSSCRH TARSKAARRP SHPKQPRVQR PRPRRRRRRR TNGWVPVGAA BACU008533/1-1252 ---------- ---------- ---------- ---------- ---------- bmy_00642T0/1-776 GLRTGSSCRH TARSKAARRP SHPKQPRVQR PRPRRRRRRR TNGWVPVGAA 1151 1200 ENSP00000396976/1-780 CEKAVYVLDE PEPAIRKSYQ AVERHGETIR VRDTVLLKSG PRKTSTPYVA ENSBTAP00000005794/1-779 CEKAVYVLDE PEPAIRKSYQ AVERHGETIR VRDTVLLKSG PRKTSTPYVA ENSTTRP00000010031/1-777 CEKAVYVLDE PEPAIRKSYQ AVQRHGETIR VRDTVLLKSG PRKTSTPYVA BACU008533/1-1252 --------DE PEPAIRKSYQ AVERHGETIR VRDTVLLKSG PRKTSTPYVA bmy_00642T0/1-776 CEKAVYVLDE PEPAIRKSYQ AVERHGETIR VRDTVLLKSG PRKTSTPYVA 1201 1250 ENSP00000396976/1-780 KISALWENPE SGELMMSLLW YYRPEHLQGG RSPSMHEPLQ NEVFASRHQD ENSBTAP00000005794/1-779 KISALWENPE SGELMMSLLW YYRPEHLQGG RSPSMHEPLQ NEVFASRHQD ENSTTRP00000010031/1-777 KISALWENPE SGELMMSLLW YYRPEHLQGG RSPSMHEPLQ NEVFASRHQD BACU008533/1-1252 KISALWENPE SGELMMSLLW YYRPEHLQGG RSPSMHE--- NEVFASRHQD bmy_00642T0/1-776 KISALWENPE SGELMMSLLW YYRPEHLQGG RSPSMHE--- NEVFASRHQD 1251 1300 ENSP00000396976/1-780 QNSVACIEEK CYVLTFAEYC RFCAMAKRRG EGLPSRKTAL VPPSADYSTP ENSBTAP00000005794/1-779 QNSVACIEEK CYVLTFAEYC RFCAMAKRRG EGLPSRKTAL VPPSVDYSTP ENSTTRP00000010031/1-777 QNSVACIEEK CYVLTFAEYC RFCAMAKRRG EGLPSRKTAL VPPSADYSTP BACU008533/1-1252 QNSVACIEEK CYVLTFAEYC RFCAMAKRRG EGLPSRKTAL VPPSADYSTP bmy_00642T0/1-776 QNSVACIEEK CYVLTFAEYC RFCAMAKRRG EGLPSRKTAL VPPSADYSTP 1301 1350 ENSP00000396976/1-780 PHRTVPEDTD PELVFLCRHV YDFRHGRILK NPQ ENSBTAP00000005794/1-779 PHRTVPEDTD PELVFLCRHV YDFRHGRILK NPQ ENSTTRP00000010031/1-777 PHRTVPEDTD PELVFLCRHV YDFRHGRILK NPQ BACU008533/1-1252 PHRTVPEDTD PELVFLCRHV YDFRHGRILK NPQ bmy_00642T0/1-776 PHRTVPEDTD PELVFLCRHV YDFRHGRILK NPQ