KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:32 2014 Check: 00 .. Name: ENSTTRP00000002888/1-886 Len: 890 Check: 3210 Weight: 1.00 Name: ENSP00000261183/1-889 Len: 890 Check: 119 Weight: 1.00 Name: bmy_12519T0/1-748 Len: 890 Check: 1992 Weight: 1.00 Name: ENSBTAP00000005804/1-877 Len: 890 Check: 1741 Weight: 1.00 Name: BACU016404/1-696 Len: 890 Check: 3068 Weight: 1.00 // 1 50 ENSTTRP00000002888/1-886 MEAGLADGEP DRTLLLGDSK DVLGPSTVVA NSDDTQHLTP GKMSQRQGKE ENSP00000261183/1-889 MEGGLADGEP DRTSLLGDSK DVLGPSTVVA NSDESQLLTP GKMSQRQGKE bmy_12519T0/1-748 ---------- ---------- -------MAE SWSGMLHL-- ---------- ENSBTAP00000005804/1-877 ---------- ---KLLGDSK DVLGPSTVVA NSDDTQHLTP GRMSQRQGKE BACU016404/1-696 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000002888/1-886 AFPTPTKDLY QPCFSPASPH SQGFERGKED ISQNKDESSL SMSKSKSESK ENSP00000261183/1-889 AYPTPTKDLH QPSLSPASPH SQGFERGKED ISQNKDESSL SMSKSKSESK bmy_12519T0/1-748 ---------- ---------- ---------- -----EDTMN FLLRCQSESK ENSBTAP00000005804/1-877 AFPTPTKDLY QPSFSPASPH TPGFERGKED ISQNKDESSL SMSKSKSESK BACU016404/1-696 ---------- ---------- ---------- ---------- -----QSESK 101 150 ENSTTRP00000002888/1-886 LYNGSEKDSS ASSKLTKKES LKVQKKNYRE EKKRATKELL STITDPSVIV ENSP00000261183/1-889 LYNGSEKDSS TSSKLTKKES LKVQKKNYRE EKKRATKELL STITDPSVIV bmy_12519T0/1-748 LYNGSEKDSS ASSKLTKKES LKVQKKNYRE EKKRATKELL STITDPSVIV ENSBTAP00000005804/1-877 LYNGSEKDSS ASSKLTKKES LKVQKKNYRE EKKRATKELL STITDPSVIV BACU016404/1-696 LYNGSEKDSS ASSKLTKKES LKVQKKNYRE EKKRATKELL STITDPSVIV 151 200 ENSTTRP00000002888/1-886 MADWLKIRGT LKSWTKLWCV LKPGVLLIYK TQKNGQWVGT VLLNACEIIE ENSP00000261183/1-889 MADWLKIRGT LKSWTKLWCV LKPGVLLIYK TQKNGQWVGT VLLNACEIIE bmy_12519T0/1-748 MADWLKIRGT LKSWTKLWCV LKPGVLLIYK TQKNGQWVGT VLLNACEIIE ENSBTAP00000005804/1-877 MADWLKIRGT LKSWTKLWCV LKPGVLLIYK TQKNGQWVGT VLLNACEIIE BACU016404/1-696 MADWL----- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000002888/1-886 RPSKKDGFCF KLFH-LEXXX XXXXGPKGEA VGSITQPLPS SYLIIRATSE ENSP00000261183/1-889 RPSKKDGFCF KLFHPLEQSI WAVKGPKGEA VGSITQPLPS SYLIIRATSE bmy_12519T0/1-748 RPSKKDGFCF KLFHPLEQSI WAVKGPKGEA VGSITQPLPS SYLIIRATSE ENSBTAP00000005804/1-877 RPSKKDGFCF KLFHPLEQSI WAVKGPKGEA VGSITQPLPS SYLIIRATSE BACU016404/1-696 ---------- ---------- ---KGPKGEA VGSITQPLPS SYLIIRATSE 251 300 ENSTTRP00000002888/1-886 SDGRCWMDAL ELALKCSSLL KRTMIREGKE HDLSISSEST HVTLYGLLRA ENSP00000261183/1-889 SDGRCWMDAL ELALKCSSLL KRTMIREGKE HDLSVSSDST HVTFYGLLRA bmy_12519T0/1-748 SDGRCWMDAL ELALKCSSLL KRTMIREGKE HDLSISSEST HVTLYGLLRA ENSBTAP00000005804/1-877 SDGRCWMDAL ELALKCSSLL KRTMIREGKE HDLSISSEST HVTLYGLLRA BACU016404/1-696 SDGRCWMDAL ELALKCSGLL KRTMIREGKE HDLSISSEST HVTLYGLLRA 301 350 ENSTTRP00000002888/1-886 NSLHSGDNFQ LNDSEIERQH FKDQDMYSDK SDKENDQEHD ESDNEVMGKS ENSP00000261183/1-889 NNLHSGDNFQ LNDSEIERQH FKDQDMYSDK SDKENDQEHD ESDNEVMGKS bmy_12519T0/1-748 NSLHSGDNFQ LNDSEIERQH FKDQDMYSDK SDKENDQEHD ESDNEVMGKS ENSBTAP00000005804/1-877 NNLHSGDNFQ LNDSEIERQH FKDQDMYSDK SDKENDQEHD ESDNEVLGKS BACU016404/1-696 NSLHSGDNFQ LNDSEIERQH FKDQDMYSDK SDKENDQEHD ESDNEVMGKS 351 400 ENSTTRP00000002888/1-886 EESDTDTSER QDDSYIEPEP VEPLKETTYT EQSHEELGEA GEASQTETVS ENSP00000261183/1-889 EESDTDTSER QDDSYIEPEP VEPLKETTYT EQSHEELGEA GEASQTETVS bmy_12519T0/1-748 EESDTDTSER QDDSYIEPEP VEPLKETTYT EQSHEELGEA GEASQTETVS ENSBTAP00000005804/1-877 EESDTDTSER QDDSYIEPEP VEPLKETTYT EQSHEELGEA GEASQTETVS BACU016404/1-696 EESDTDTSER QDDSYIEPEP VEPLKETTYT EQSHEELGEA GEASQTETVS 401 450 ENSTTRP00000002888/1-886 EENKSLIWTL LKQVRPGMDL SRVVLPTFIL EPRSFLDKLS DYYYHADFLS ENSP00000261183/1-889 EENKSLIWTL LKQVRPGMDL SKVVLPTFIL EPRSFLDKLS DYYYHADFLS bmy_12519T0/1-748 EENKSLIWTL LKQVRPGMDL SRVVLPTFIL EPRSFLDKLS DYYYHADFLS ENSBTAP00000005804/1-877 EENKSLIWTL LKQVRPGMDL SRVVLPTFIL EPRSFLDKLS DYYYHADFLS BACU016404/1-696 EENKSLIWTL LKQVRPGMDL SRVVLPTFIL EPRSFLDKLS DYYYHADFLS 451 500 ENSTTRP00000002888/1-886 EAALEENPYF RLKKVVKWYL SGFYKKPKGL KKPYNPILGE TFRCLWIHPR ENSP00000261183/1-889 EAALEENPYF RLKKVVKWYL SGFYKKPKGL KKPYNPILGE TFRCLWIHPR bmy_12519T0/1-748 GAALEENPYF RLKKVVKWYL SGFYKKPKGL KKPYNPILGE TFRCLWIHPR ENSBTAP00000005804/1-877 EAALEENPYF RLKKVVKWYL SGFYKKPKGL KKPYNPILGE TFRCLWIHPR BACU016404/1-696 EAALEENPYF RLKKVVKWYL SGFYKKPKGL KKPYNPILGE TFRCLWIHPR 501 550 ENSTTRP00000002888/1-886 TNSKTFYIAE QVSHHPPISA FYVSNRKDGF CLSGSILAKS KFYGNSLSAL ENSP00000261183/1-889 TNSKTFYIAE QVSHHPPISA FYVSNRKDGF CLSGSILAKS KFYGNSLSAI bmy_12519T0/1-748 TNSKTFYIAE QVSHHPPISA FYVSNRKDGF CLSGSILAKS KFYGNSLSAI ENSBTAP00000005804/1-877 TNSKTFYIAE QVSHHPPISA FYVSNRKDGF CLSGSILAKS KFYGNSLSAI BACU016404/1-696 TNSKTFYIAE QVSHHPPISA FYVSNRKDGF CLSGSILAKS KFYGNSLSAI 551 600 ENSTTRP00000002888/1-886 LEGEARLTFL NRGEDYAMTM PYAHCKXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261183/1-889 LEGEARLTFL NRGEDYVMTM PYAHCKGILY GTMTLELGGT VNITCQKTGY bmy_12519T0/1-748 LEGEARLTFL NRGEDYVMTM PYAHCKGILY GTMTLELGGT VNITCQKTGY ENSBTAP00000005804/1-877 LEGEARLTFL NRGEDYVMTM PYAHCKGILY GTMTLELGGT VNITCQKTGY BACU016404/1-696 LEGEARLTFL NRGEDYVMTM PYAHCKGILY GTMTLELGGT VNITCQKTGY 601 650 ENSTTRP00000002888/1-886 XXXXXXXXX- PFLGSSDCVN QISGKLKLGK EVLATLEGHW DSEVFITDKK ENSP00000261183/1-889 SAILEFKLK- PFLGSSDCVN QISGKLKLGK EVLATLEGHW DSEVFITDKK bmy_12519T0/1-748 SAILEFKLK- PFLGSSDCVN QISGKLKLGK EVLATLEGHW DSEVFITDKK ENSBTAP00000005804/1-877 SAILEFKLKK PFLGSSDCVN QISGKLKLGK EVLATLEGHW DSEVFITDKK BACU016404/1-696 SAILEFKLK- ---------- ---------- ---------- DSEVFITDKK 651 700 ENSTTRP00000002888/1-886 TDNSEVFWNP TPDIKQWRLI RHTVKFEEQG DFESEXXXXX XXXXXXXXXX ENSP00000261183/1-889 TDNSEVFWNP TPDIKQWRLI RHTVKFEEQG DFESEKLWQR VTRAINAKDQ bmy_12519T0/1-748 TDNSEVFWNP TPDIKQWRLI RHTVKFEEQE DFESEKLWQR VTRAINAKDQ ENSBTAP00000005804/1-877 TDNSEVFWNP TPDIKQWRLI RHTVKFEEQG DFESEKLWQR VTRAINAKDQ BACU016404/1-696 TDNSEVFWNP TPDIKQWRLI RHTVKFEEQG DFESEKLWQR VTRAINAKDQ 701 750 ENSTTRP00000002888/1-886 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXTR ENSP00000261183/1-889 TEATQEKYVL EEAQRQAARD RKTKNEEWSC KLFELDPLTG EWHYKFADTR bmy_12519T0/1-748 TEATQEKYVL EEAQRQAARD RKTKNEEWTC KLFELDSLTG EWHYKFADTR ENSBTAP00000005804/1-877 TEATQEKYVL EEAQRQAARE RKTKNEEWTC KLFELDSLTG EWHYKFADTR BACU016404/1-696 TEATQEKYVL EEAQRQAARD RKTKNEEWTC KLFELDSLTG EWHYKFADTR 751 800 ENSTTRP00000002888/1-886 PWDPLNDMIQ YEKDGVIQTK VKHRTPMVSV PKMKHKPTRQ QKK-AKGYSS ENSP00000261183/1-889 PWDPLNDMIQ FEKDGVIQTK VKHRTPMVSV PKMKHKPTRQ QKKVAKGYSS bmy_12519T0/1-748 PWDPLNDMIQ YEKDGVIQTK VKHRTPMVSV PKMKHKPTRQ QKKVAKGYSS ENSBTAP00000005804/1-877 PWDPLNDMIQ YEKDGVIQTK VKHRTPMVSV PKMKHKPTRQ QKKVAKGYSS BACU016404/1-696 PWDPLNDMIQ YEKDGVIQTK VKHRTPMVSV PKMKHKPTRQ QKKVAKGYSS 801 850 ENSTTRP00000002888/1-886 PXXXXXXXXX XXXQSVKPSA RRKKGIELGD IQTSIESIKQ TQEEIKRNIM ENSP00000261183/1-889 PEPDIQDSSG SEAQSVKPST RRKKGIELGD IQSSIESIKQ TQEEIKRNIM bmy_12519T0/1-748 PEPDIQDSSG SEAYEM-PTE RSSS------ ---------- ---------- ENSBTAP00000005804/1-877 PEPDIQDSSG SEAQSVKPSA RRKKGIELGD IQTSIESIKQ TQEEIKRNIM BACU016404/1-696 PEPDIQDSSG SEAQSVKPSA RRKKGIELGD IQTSIESIKQ TQEEIKRNIM 851 900 ENSTTRP00000002888/1-886 ALR-HLISST PATDYFLQLK DYFIIFLLIL LQVIINFMFK ENSP00000261183/1-889 ALRNHLVSST PATDYFLQQK DYFIIFLLIL LQVIINFMFK bmy_12519T0/1-748 ---------- ---------- ---------- ---------- ENSBTAP00000005804/1-877 ALRNHLISST PATDYFLQQK DYIIIFLLIL LQVIINFMFK BACU016404/1-696 ALRNHLISST PATDYFLQQK DYFIIFLLIL LQVIINFMFK