KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:34 2014 Check: 00 .. Name: bmy_16944T0/1-748 Len: 748 Check: 4019 Weight: 1.00 Name: ENSBTAP00000005808/1-445 Len: 748 Check: 3413 Weight: 1.00 Name: ENSP00000247225/1-441 Len: 748 Check: 4264 Weight: 1.00 Name: BACU018602/1-445 Len: 748 Check: 5646 Weight: 1.00 Name: ENSTTRP00000002094/1-441 Len: 748 Check: 4471 Weight: 1.00 // 1 50 bmy_16944T0/1-748 MNQLKNAGHG ETRKDFKQDR TVIQFAFQKA VFKAGKRFEG VVNGARGMKK ENSBTAP00000005808/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000247225/1-441 ---------- ---------- ---------- ---------- ---------- BACU018602/1-445 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002094/1-441 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_16944T0/1-748 TMILTEYAEF EMMDICTVVR VLGHWHRRTW HRDRGLSQST LDREKPATPA ENSBTAP00000005808/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000247225/1-441 ---------- ---------- ---------- ---------- ---------- BACU018602/1-445 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002094/1-441 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_16944T0/1-748 GGERGLKLEK EDAQSPARRA PRRLVGINKK NLKAAAPPSL RRPDTARVSS ENSBTAP00000005808/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000247225/1-441 ---------- ---------- ---------- ---------- ---------- BACU018602/1-445 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002094/1-441 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_16944T0/1-748 GRTQAAGPPS LVAMGAGRGA ARAGAWRPRA VEERSVREER AGRGRAGRGR ENSBTAP00000005808/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000247225/1-441 ---------- ---------- ---------- ---------- ---------- BACU018602/1-445 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002094/1-441 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_16944T0/1-748 AGRGRAAAAE ACGAVTRQTR AVGGRRCRRG ARRQIGAAPA AGPPSRRRPP ENSBTAP00000005808/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000247225/1-441 ---------- ---------- ---------- ---------- ---------- BACU018602/1-445 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002094/1-441 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_16944T0/1-748 ARGPRGPVIM SLRQRLVQLV GSLQDPQKVA RFQRLCGVEA PVSRTATAAA ENSBTAP00000005808/1-445 ---------M SVGQWLAQLM SSLQDPQKVA RFQQLCGVEA LASCTAAAAA ENSP00000247225/1-441 ---------M SLRQRLAQLV GRLQDPQKVA RFQRLCGVEA PPRR----SA BACU018602/1-445 ---------M SLRQRLVQLV GSLQDPQKVA RFQRLCGVEA PVSRTATAAA ENSTTRP00000002094/1-441 ---------M SLRQRLVQLV GSLQDPQKVA RFQRLCGVEA PPHR----PA 301 350 bmy_16944T0/1-748 DPREDEKAEA PLAGESRRRE RQLGASGGPP PPGSDRNQCP AKPGGGGGAP ENSBTAP00000005808/1-445 DPREDEKAEA HLTGESRRRE RQPGPSGGPP PPGSDRNQCP AKLGD-GGAP ENSP00000247225/1-441 DRREDEKAEA PLAGDPRLRG RQPGAPGGPQ PPGSDRNQCP AKPDG-GGAP BACU018602/1-445 DPREDEKAEA PLAGESRRRE RQLGASGGPP PPESDRNQCP AKPGG-GGAP ENSTTRP00000002094/1-441 DPREDEKAEA PLAGESRRRE RQLGASGGPP PPGSDRNQCP AKPDG-GGAP 351 400 bmy_16944T0/1-748 NGVRNGRATE LGPASQRRAG VLRRNSLTGE EGQLAHVSNM PLYYLFCFGT ENSBTAP00000005808/1-445 NGVRNGRATE VGPASPRCAG LLRRNSLTDE EGQLAHVSNW PLHYLFCFGT ENSP00000247225/1-441 NGVRNGLAAE LGPASPRRAG ALRRNSLTGE EGQLARVSNW PLYCLFCFGT BACU018602/1-445 NGVRNGRATE LGPASQRRAG VLRRNSLTGE EGQLAHVSNM PLYYLFCFGT ENSTTRP00000002094/1-441 NGVRNGRATE LGPASQRRAG VLRRNSLTGE EGQLAHVSNM PLYYLFCFGT 401 450 bmy_16944T0/1-748 ELGNELFYIL FFPFWIWNLD ALVGRRLVVI WVLAMYLGQC TKDIIRWPRP ENSBTAP00000005808/1-445 ELGNELFYIL FFPFWIWNLD ALVGRRLVVI WVLVMYLGQC TKDIIRWPRP ENSP00000247225/1-441 ELGNELFYIL FFPFWIWNLD PLVGRRLVVI WVLVMYLGQC TKDIIRWPRP BACU018602/1-445 ELGNELFYIL FFPFWIWNLD ALVGRRLVVI WVLAMYLGQC TKDIIRWPRP ENSTTRP00000002094/1-441 ELGNELFYIL FFPFWIWNLD ALVGRRLVVI WVLAMYLGQC TKDIIRWPRL 451 500 bmy_16944T0/1-748 ASPPVVKLEV FYNSEYSMPS THAMSGTAIP ISMILLTYGR WQPELGKNKN ENSBTAP00000005808/1-445 ASPPVVKLEV FYNSEYSMPS THAMSGTAIP ISMILLTYGR WQYPL---TY ENSP00000247225/1-441 ASPPVVKLEV FYNSEYSMPS THAMSGTAIP ISMVLLTYGR WQYPL---IY BACU018602/1-445 ASPPVVKLEV FYNSEYSMPS THAMSGTAIP ISMILLTYGR WQYPL---IY ENSTTRP00000002094/1-441 ASPPVVKLEV FYNSEYSMPS THAMSGTAIP ISMILLTYGR WQYPL---IY 501 550 bmy_16944T0/1-748 GGANMDNKLR DAEYRKEDGE MANSSQSLME VRGSIPDVIA GFVYTILILA ENSBTAP00000005808/1-445 GLILIPC--- -------WCS LVCISRIYMG MH-SILDVIA GFLYTILILV ENSP00000247225/1-441 GLILIPC--- -------WCS LVCLSRIYMG MH-SILDIIA GFLYTILILA BACU018602/1-445 GLILIPC--- -------WCS LVCLSRIYMG MH-SILDVIA GFVYTILILA ENSTTRP00000002094/1-441 GLILIPC--- -------WCS LVCLSRIYMG MH-SILDVIA GFVYTILILA 551 600 bmy_16944T0/1-748 IFYPFVDLID NFNQTHKYAP LIIIGLHLAL GIFSFTLDTW STSRGDTAEI ENSBTAP00000005808/1-445 IFYPFVDVID NFNQTHRYAP LIIIGLHLAL GIFSFTLDTW STSRGDTAEI ENSP00000247225/1-441 VFYPFVDLID NFNQTHKYAP FIIIGLHLAL GIFSFTLDTW STSRGDTAEI BACU018602/1-445 IFYPFVDLID NFNQTHKYAP LIIIGLHLAL GIFSFTLDTW STSRGDTAEI ENSTTRP00000002094/1-441 IFYPFVDLID NFNQTHKYAP LIIIGLHLAL GIFSFTLDTW STSRGDTAEI 601 650 bmy_16944T0/1-748 LGSGAGIACG SHFTYKMGLM LDPPLDILPL PRPPISVTLF GKAILRILVG ENSBTAP00000005808/1-445 LGSGAGIACG SHFTYKMGLL LDPPLDILPL ARHPISMTLF GKAILRIFIG ENSP00000247225/1-441 LGSGAGIACG SHVTYNMGLV LDPSLDTLPL AGPPITVTLF GKAILRILIG BACU018602/1-445 LGSGAGIACG SHFTYKMGLI LDPPLDILPL PRHPISVTLF GKAILRILVG ENSTTRP00000002094/1-441 LGSGAGIACG SHFTYKMGLI LDPPLDILPL PRPPISVTLF GKAILRILVG 651 700 bmy_16944T0/1-748 MLFVLVVRDI MKRITIPLAC KIFHIPCDDV RKARQHMEVE LPYRSVHCVE ENSBTAP00000005808/1-445 MLFVLVVRDI MKRITVPLAC KIFSIPCDDI RKARQHMEVE LPYRYITY-G ENSP00000247225/1-441 MVFVLIIRDV MKKITIPLAC KIFNIPCDDI RKARQHMEVE LPYRYITY-G BACU018602/1-445 MLFVLVVRDI MKRITIPLAC KIFNIPCDDV RKARQHMEVE LPYRYLTY-G ENSTTRP00000002094/1-441 MLFVLVVRDI MKRITIPLAC KIFNIPCDDV RKARQHMEVE LPYRYITY-G 701 750 bmy_16944T0/1-748 CTLFALVLDI SLIIQHKDSP GFQMSPSPDL RDSTGVGDNE VDSNSPNI ENSBTAP00000005808/1-445 MVGFSITFLI PYIF------ -FFI------ ----GIS--- -------- ENSP00000247225/1-441 MVGFSITFFV PYIF------ -FFI------ ----GIS--- -------- BACU018602/1-445 MVGFSITFFV PYIF------ -FFI------ ----GIS--- -------- ENSTTRP00000002094/1-441 MVGFSITFFV PYIF------ -FFI------ ----GIS--- --------