KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:34 2014 Check: 00 .. Name: ENSP00000378888/1-293 Len: 587 Check: 9484 Weight: 1.00 Name: BACU015876/1-531 Len: 587 Check: 1881 Weight: 1.00 Name: ENSBTAP00000005817/1-295 Len: 587 Check: 3098 Weight: 1.00 Name: bmy_03116T0/1-337 Len: 587 Check: 1221 Weight: 1.00 Name: ENSTTRP00000016497/1-295 Len: 587 Check: 1352 Weight: 1.00 // 1 50 ENSP00000378888/1-293 ---------- ---------- -MG----SRA ELCTLL---- ---------- BACU015876/1-531 ---MWALARG RCGGASSSIP GWGIARFPQT HPGTVVTVLD LFDGRESLRP ENSBTAP00000005817/1-295 ---------- ---------- -MG----SRA EPCTVL---- ---------- bmy_03116T0/1-337 MGKDWGSLRV LDWQSLKSRR NMG----SRA ELCTVL---- ---------- ENSTTRP00000016497/1-295 ---------- ---------- -MG----SRA ELCTVL---- ---------- 51 100 ENSP00000378888/1-293 ---------- ---------- ---------- GGF------- ---------- BACU015876/1-531 LWEQVQGFRE AVAPIMAKAP QGVHLICYSQ GGLVCRALLS VMDEHNVDSF ENSBTAP00000005817/1-295 ---------- ---------- ---------- GGL------- ---------- bmy_03116T0/1-337 ---------- ---------- ---------- GGL------- ---------- ENSTTRP00000016497/1-295 ---------- ---------- ---------- GGL------- ---------- 101 150 ENSP00000378888/1-293 ---------- --------SF ---------- ---------- ---------- BACU015876/1-531 ISLSSPQMGQ YGDTDYLKWL FPTSMRSNLY RICYSPWGQE FSICNYWHDP ENSBTAP00000005817/1-295 ---------- --------WF ---------- ---------- ---------- bmy_03116T0/1-337 ---------- --------SF ---------- ---------- ---------- ENSTTRP00000016497/1-295 ---------- --------SF ---------- ---------- ---------- 151 200 ENSP00000378888/1-293 ---------- -LLLLIPGE- ---------- ---------- ---------- BACU015876/1-531 HHDDLYLNAS SFLALINGER DHPNATAWRK NFLRVGRLVL IGGPDDGVIT ENSBTAP00000005817/1-295 ---------- -LLLLMTGE- ---------- ---------- ---------- bmy_03116T0/1-337 ---------- -LLLLMTGE- ---------- ---------- ---------- ENSTTRP00000016497/1-295 ---------- -LLLLMTGE- ---------- ---------- ---------- 201 250 ENSP00000378888/1-293 ---------- ---------- ---GAKGGSL RES------- ---------- BACU015876/1-531 PWQSSFFGFY DANETVLEME EQLGSQGPFL RSSVNDKSWF PPSRVLSSGA ENSBTAP00000005817/1-295 ---------- ---------- ---GAKGGAL KES------- ---------- bmy_03116T0/1-337 ---------- ---------- ---GAKGGSL KES------- ---------- ENSTTRP00000016497/1-295 ---------- ---------- ---GAKGGSL KES------- ---------- 251 300 ENSP00000378888/1-293 ---------- ----QGVCSK QTLVVPLHYN ESYSQPVYKP YLTLCAGRRI BACU015876/1-531 CSELSHPLKA KRGDQGVCSK QTLVVPLRYN ESYSQPVYKP YLTLCSGRRV ENSBTAP00000005817/1-295 ---------- ----QGVCSK QTLVVPLRYN ESYSQPVYKP YLTLCSGRRV bmy_03116T0/1-337 ---------- ----QGVCSK QTLVVPLRYN ESYSQPVYKP YLTLCSGRRV ENSTTRP00000016497/1-295 ---------- ----QGVCSK QTLVVPLRYN ESYSQPVYKP YLTLCSGRRV 301 350 ENSP00000378888/1-293 CSTY------ RTMYRVMWRE VRREVQQTHA VCCQGWKKRH PGALTC-EAI BACU015876/1-531 CSTYSPALCS RTTYHVAWRE VRREVQQTHA VCCQGWKKRH PGALTCDEAI ENSBTAP00000005817/1-295 CSTY------ RTTYRVAWRE VRREVRQTHA VCCQGWKKRH PGALTCDEAI bmy_03116T0/1-337 CSTY------ RTTYHVAWRE VRREVQQTHA VCCQGWKKRH PGALTCDE-- ENSTTRP00000016497/1-295 CSTY------ RTTYHVAWRE VRREVQQTHA VCCQGWKKRH PGALTCDEAI 351 400 ENSP00000378888/1-293 CAKPCLNGGV CVRPDQCECA PGWGGKHCHV DVDECRTSIT LCSHHCFNTA BACU015876/1-531 CAKPCQNGGV CVRPDRCECA PGWGGKHCHV DVDECRTGVT LCSHGCFNTA ENSBTAP00000005817/1-295 CAKPCQNGGV CVRPDQCECA RGWGGKHCHV DVDECRTGVT LCSHRCLNTA bmy_03116T0/1-337 ---------- ---------- ---------- DVDECRTGVT LCSHGCFNTA ENSTTRP00000016497/1-295 CAKPCQNGGV CVRPDQCECA PGWGGKHCHV DVDECRAGVT LCSHGCLNTA 401 450 ENSP00000378888/1-293 GSFTCGCPHD LVLGVDGRTC MEGS---PEP PTSASILSVA VREAEKDERA BACU015876/1-531 GSFTCGCPRG LVLGPDGRTC AEGGPEPPEP PTSASILSVA VREAGHDERA ENSBTAP00000005817/1-295 GSFTCGCPHG LVLGLDGRTC AERA---PEP PTSASILNVA VREAGLDKRA bmy_03116T0/1-337 GSFTCGCPRG LVLGPDGRTC AEGA---PEP PTSASILSVA VREAGHDERA ENSTTRP00000016497/1-295 GSFTCGCPQG LVLGPDGRTC GEGA---PEP PTSASILSVA VREAGHDERA 451 500 ENSP00000378888/1-293 LKQEIHELRG RLERLEQWAG QAGAWVRAVL PVPPEELQPE QVAELWGRGD BACU015876/1-531 LRREIRELRG RLERLEQWAS QAGAWVRAVL PMPPEELQPE QVAELWGRGD ENSBTAP00000005817/1-295 LRREIGELRG RLERLEQWAG QAGAWVRAVL PVPPEELQPE QVAELWGQGD bmy_03116T0/1-337 LRREIRELRG RLERLEQWAS QAGAWVRAVL PMPPEELQPE QVAELWGRGD ENSTTRP00000016497/1-295 LRREIRELRG RLERLEQWAS QAGAWVRAVL PMPPEELQPE QVAELWGRGD 501 550 ENSP00000378888/1-293 RIESLSDQVL LLEERLGAC- ---------- ---SCED--- ---------- BACU015876/1-531 RIESLSDQVL LLEERLGAC- ---------- ---SCED--- ---------- ENSBTAP00000005817/1-295 RIESLSDQVL LLEERLGTC- ---------- ---SCED--- ---------- bmy_03116T0/1-337 RIESLSDQVL LLEERLGACE SPCPSLWGPP SPNSCPQLFQ TPFPNSVFSC ENSTTRP00000016497/1-295 RIESLSDQVL LLEERLGAC- ---------- ---SCED--- ---------- 551 600 ENSP00000378888/1-293 ------NSLG LGVNHR---- ---------- ------- BACU015876/1-531 ------NSLG PGLNRRS--- ---------- ------- ENSBTAP00000005817/1-295 ------NSLG PGLKGRR--- ---------- ------- bmy_03116T0/1-337 PKSLLLHSLT PYLPQISALY HPFSWSVSNL VVPLIGE ENSTTRP00000016497/1-295 ------NSLG PGLNRRS--- ---------- -------