KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:34 2014 Check: 00 .. Name: ENSTTRP00000005639/1-278 Len: 287 Check: 3007 Weight: 1.00 Name: BACU019088/1-271 Len: 287 Check: 2315 Weight: 1.00 Name: bmy_03115T0/1-283 Len: 287 Check: 7809 Weight: 1.00 Name: ENSP00000378877/1-283 Len: 287 Check: 4042 Weight: 1.00 Name: ENSBTAP00000005821/1-287 Len: 287 Check: 2623 Weight: 1.00 // 1 50 ENSTTRP00000005639/1-278 MELWPGVWPL LLLLSL---- LLPTLWFCSP SAKYFFKMAF YNGWILFLAV BACU019088/1-271 MELWPGLWTL LLLLAL---- LLPTLWFCSP SAKYFFKMAF YNGWILFLAV bmy_03115T0/1-283 MELWPGLWTL LLLLAL---- LLPTLWFCSP SAKYFFKMGF YNGWILFLAV ENSP00000378877/1-283 MDLWPGAWML LLLLFLLLLF LLPTLWFCSP SAKYFFKMAF YNGWILFLAV ENSBTAP00000005821/1-287 MELWPGAGTL LLLLFLLLLL LLPTLWFCSP SAKYFFKMAF YNGWILFLAV 51 100 ENSTTRP00000005639/1-278 LAIPVCAVRG RNVENMKILR LMLLHIKYLY GIRVEVRGAH HFPPSQPYVV BACU019088/1-271 LAIPVCAVRG RNVENMKILR LMLLHIKYLY GIRVEVRGAH HFPPSQPYVV bmy_03115T0/1-283 LAIPVCAVRG RNVENMKILR LMLLHIKYLY GIRVEVRGAH HFPPSQPYVV ENSP00000378877/1-283 LAIPVCAVRG RNVENMKILR LMLLHIKYLY GIRVEVRGAH HFPPSQPYVV ENSBTAP00000005821/1-287 LAIPVCAVRG RNVENMKILR LMLLHIKYLY GIRVEVRGAH HFPPSQPYVV 101 150 ENSTTRP00000005639/1-278 VSNHQSSLDL LGMMEVLPGR CVPIAKRELL WAGSAGLACW LAGVIFIDR- BACU019088/1-271 VSNHQSSLDL LGMMEVLPGR CVPIAKRELL WAGSAGLACW LAGVIFIDRK bmy_03115T0/1-283 VSNHQSSLDL LGMMEVLPGR CVPIAKRELL WAGSAGLACW LAGVIFIDRK ENSP00000378877/1-283 VSNHQSSLDL LGMMEVLPGR CVPIAKRELL WAGSAGLACW LAGVIFIDRK ENSBTAP00000005821/1-287 VSNHQSSLDL LGMMEVLPGR CVPIAKRELL WAGSAGLACW LAGVIFIDRK 151 200 ENSTTRP00000005639/1-278 RTGDAIIVMF EAAQTLLTQD XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019088/1-271 RTGDAISVMS EVAQTLITQD RLVLGTSEGS RGLTAFRFP- ---------- bmy_03115T0/1-283 RTGDAISVMS EVAQTLITQD VRVWVFPEGT RNHNGSMLPF KRGAFHLAVQ ENSP00000378877/1-283 RTGDAISVMS EVAQTLLTQD VRVWVFPEGT RNHNGSMLPF KRGAFHLAVQ ENSBTAP00000005821/1-287 RTGDAISVMS EVAQTLLTQD VRVWVFPEGT RNHNGSMLPF KRGAFHLAVQ 201 250 ENSTTRP00000005639/1-278 XXVPIVPIVM SSYQDFYCKK ERRFTSGRCQ VRVLPPVPTE GLTPDDVPAL BACU019088/1-271 -QVPIVPIVM SSYQDFYCKK ERRFTSGRCQ VRVLPPVPTE GLTPDDVPAL bmy_03115T0/1-283 AQVPIVPIVM SSYQDFYCKK ERRFTSGRCQ VRVLPPVPTE GLTPDDVPAL ENSP00000378877/1-283 AQVPIVPIVM SSYQDFYCKK ERRFTSGQCQ VRVLPPVPTE GLTPDDVPAL ENSBTAP00000005821/1-287 AQVPIVPIVM SSYQDFYCKK ERRFTSGRCQ VRVLPPVPTE GLKPDDVPAL 251 300 ENSTTRP00000005639/1-278 ADTVRHSMLT VFREISTDGR GGGDYLKKPG GGR---- BACU019088/1-271 ADTVRHSMLT VFREISTDGR GGGDYLKKPG RVGEAQL bmy_03115T0/1-283 ADTVRHSMLT VFREISTDGR GGGDYLKKPG GVGEAQL ENSP00000378877/1-283 ADRVRHSMLT VFREISTDGR GGGDYLKKPG GGG---- ENSBTAP00000005821/1-287 ADRVRHSMLT VFREISTDGR GGGDYLKKPG GVGEAGL