KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:39 2014 Check: 00 .. Name: ENSTTRP00000013559/1-238 Len: 305 Check: 3585 Weight: 1.00 Name: ENSP00000328216/1-303 Len: 305 Check: 7380 Weight: 1.00 Name: ENSBTAP00000005840/1-303 Len: 305 Check: 7005 Weight: 1.00 Name: bmy_01437T0/1-298 Len: 305 Check: 9546 Weight: 1.00 Name: BACU013627/1-240 Len: 305 Check: 9261 Weight: 1.00 // 1 50 ENSTTRP00000013559/1-238 -HPEPAPPPS SNSPELPLSC GNITSGSRRS RRRSGDGEPP GS-PSPPPP- ENSP00000328216/1-303 MHPEPAPPPS RSSPELPPSG GSTTSGSRRS RRRSGDGEPP GAPPPPPPPS ENSBTAP00000005840/1-303 MHPEPAPPPS SNSPELPLSG GNSTSGSRRS RRRSGDGEPP GSPPPPPPP- bmy_01437T0/1-298 MHPEPAPPPS SNSPELPLSC GNPTSGSRRS RRRSGDGEPP GS-PSPPPP- BACU013627/1-240 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013559/1-238 AVTYPDWIGQ SYSEVMSLNE HSMQALSWRK LYLSRAKLKA SSRTSALLSG ENSP00000328216/1-303 AVTYPDWIGQ SYSEVMSLNE HSMQALSWRK LYLSRAKLKA SSRTSALLSG ENSBTAP00000005840/1-303 AVTYPDWIGQ SYSEVMSLNE HSMQALSWRK LYLSRAKLKA SSRTSALLSG bmy_01437T0/1-298 AVTYPDWIGQ SYSEVMSLNE HSMQALSWRK LYLSRAKLKA SSRTSALLSG BACU013627/1-240 ---------- -----MSLNE HSMQALSWRK LYLSRAKLKA SSRTSALLSG 101 150 ENSTTRP00000013559/1-238 FAMVAMVEVQ LDADHDYPPG LLIAFSACTT VLVAVHLFAL MISTCILPNI ENSP00000328216/1-303 FAMVAMVEVQ LDADHDYPPG LLIAFSACTT VLVAVHLFAL MISTCILPNI ENSBTAP00000005840/1-303 FAMVAMVEVQ LDADHDYPPG LLIAFSACTT VLVAVHLFAL MISTCILPNI bmy_01437T0/1-298 FAM-----VQ LDADHDYPPG LLIAFSACTT VLVAVHLFAL MISTCILPNI BACU013627/1-240 FAMVAMVEVQ LDADHDYPPG LLIAFSACTT VLVAVHLFAL MISTCILPNI 151 200 ENSTTRP00000013559/1-238 EAVSNVHNLN SVKESPHERM HRHIELAWAF STVIGTLLFL AEVVLLCWVK ENSP00000328216/1-303 EAVSNVHNLN SVKESPHERM HRHIELAWAF STVIGTLLFL AEVVLLCWVK ENSBTAP00000005840/1-303 EAVSNVHNLN SVKESPHERM HRHIELAWAF STVIGTLLFL AEVVLLCWVK bmy_01437T0/1-298 EAVSNVHNLN SVKESPHERM HRHIELAWAF STVIGTLLFL AEVVLLCWVK BACU013627/1-240 EAVSNVHNLN SVKESPHERM HRHIELAWAF STVIGTLLFL AEVVLLCWVK 201 250 ENSTTRP00000013559/1-238 FLPLKKQPGQ VRPTSKPPAS GAAANVSSST GGITPGQAAA I--------- ENSP00000328216/1-303 FLPLKKQPGQ PRPTSKPPAS GAAANV--ST SGITPGQAAA IASTTIMVPF ENSBTAP00000005840/1-303 FLPLKKQPGQ LRPTSKPPAG GAAANVS-ST GGITPGQAAA IASTTIMVPF bmy_01437T0/1-298 FLPLKKQPGQ TRPTSKPPAS GAAANVSGST GGITPGQAAA IASTTIMVPF BACU013627/1-240 FLPLKKQPGQ ARPTSKPPAS GAAANVSGST GGITPGQAAA IASTTIMVPF 251 300 ENSTTRP00000013559/1-238 ---------- ---------- ---------- ---------- ---------- ENSP00000328216/1-303 GLIFIVFAVH FYRSLVSHKT DRQFQELNEL AEFARLQDQL DHRGDHPLTP ENSBTAP00000005840/1-303 GLIFIVFAVH FYRSLVSHKT DRQFQELNEL AEFARLQDQL DHRGDHPLTP bmy_01437T0/1-298 GLIFIVFAVH FYRSLVSHKT DRQFQELNEL AEFARLQDQL DHRGDHPLTP BACU013627/1-240 GLIFIVFAVH FYRSLVSHKT DRQFQELNEL AEFARLQDQL DHRGDHPLTP 301 350 ENSTTRP00000013559/1-238 ----- ENSP00000328216/1-303 GSHYA ENSBTAP00000005840/1-303 GSHYA bmy_01437T0/1-298 GSHYA BACU013627/1-240 GSHYA