KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:40 2014 Check: 00 .. Name: ENSBTAP00000005853/1-651 Len: 990 Check: 8265 Weight: 1.00 Name: bmy_08478T0/1-690 Len: 990 Check: 7627 Weight: 1.00 Name: ENSP00000348460/1-933 Len: 990 Check: 5044 Weight: 1.00 Name: BACU008704/1-367 Len: 990 Check: 6082 Weight: 1.00 Name: ENSTTRP00000003062/1-907 Len: 990 Check: 446 Weight: 1.00 // 1 50 ENSBTAP00000005853/1-651 ---------- ---------- ---------- ---------- ---------- bmy_08478T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSP00000348460/1-933 -------MAP TKPSFQQDPS RRERITAQHP LPNQSECRKI YRYDGIYCES BACU008704/1-367 MGRAGAAANG TPQNVQGITS YQQRITAQHP LPNQSECRKI YRYDGIYCES ENSTTRP00000003062/1-907 ---------- ---------- ----ITAQHP LPNQSECRKI YRYDGIYCES 51 100 ENSBTAP00000005853/1-651 ---------- ---------- ---------- ---------- ---------- bmy_08478T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSP00000348460/1-933 TYQNLQALRK EKSRDAARSR RGKENFEFYE LAKLLPLPAA ITSQLDKASI BACU008704/1-367 TYQNLQALRK EKSRDAARSR RGKENFEFYE LAKLLPLPAA ITSQLDKASI ENSTTRP00000003062/1-907 TYQNLQALRK EKSRDAARSR RGKENFEFYE LAKLLPLPAA ITSQLDKASI 101 150 ENSBTAP00000005853/1-651 ---------- ---------- ---------- ---------- ---------- bmy_08478T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSP00000348460/1-933 IRLTISYLKM RDFANQGDPP WNLRMEGPPP NTSVKVIGAQ RRRSPSALAI BACU008704/1-367 IRLTISYLKM RDFANQGDPP WNLRMEGPPP NTSVKVIGAQ RRRSPSALAI ENSTTRP00000003062/1-907 IRLTISYLKM RDFANQGDPP WNLRMEGPPP NTSVKVIGAQ RRRSPSALAI 151 200 ENSBTAP00000005853/1-651 ---------- ---------- ---------- ---------- ---------- bmy_08478T0/1-690 ---------- ---MVQGFLT LL-------- ---------- ---------- ENSP00000348460/1-933 EVFEAHLGSH ILQSLDGFVF ALNQEGKFLY ISETVSIYLG LSQVELTGSS BACU008704/1-367 EVFEAHLGSH ILQSLDGFVF ALNQEGKFLY ISETVSIYLG LSQVELTGSS ENSTTRP00000003062/1-907 EVFEAHLGSH ILQSLDGFVF ALNQEGKFLY ISETVSIYLG LSQVELTGSS 201 250 ENSBTAP00000005853/1-651 ---------- ---------- ---------- ---------- ---------- bmy_08478T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSP00000348460/1-933 VFDYVHPGDH VEMAEQLGMK LPPGRGLLSQ GTAEDGASSA SSSSQSETPE BACU008704/1-367 VFDYVHPGDH VEMAEQLGMK LPPGRGLLSQ GTAEDGASSA SSSSHSETPE ENSTTRP00000003062/1-907 VFDYVHPGDH VEMAEQLGMK LPPGRGLLSQ GTAEDAASSA SSSSQSETPE 251 300 ENSBTAP00000005853/1-651 ---------- ---------- ---------- ---------F QVIHITGRLR bmy_08478T0/1-690 ---------- ---------- ---------- ---------W CVIHITGRLR ENSP00000348460/1-933 PVESTSPSLL TTDNTLERSF FIRMKSTLTK RGVHIKSSGY KVIHITGRLR BACU008704/1-367 PVESTSPSLL TTDNTLERSF FIRMKSTLTK RGVHIKSSGY KVIHITGRLR ENSTTRP00000003062/1-907 PVESTSPSLL TTDNTLERSF FIRMKSTLTK RGVHIKSSGY KVIHITGRLR 301 350 ENSBTAP00000005853/1-651 LRVSLSHGRT VPSQIMGLVV VAHALPPPTI NEVRIDCHMF VTRVNMDLNI bmy_08478T0/1-690 LRVSLSHGRT VPSQIMGLVV VAHALPPPTI NEVRIDCHMF VTRVNMDLNI ENSP00000348460/1-933 LRVSLSHGRT VPSQIMGLVV VAHALPPPTI NEVRIDCHMF VTRVNMDLNI BACU008704/1-367 LRVSLSHGRT VPSQIMGLVV VAHALPPPTI NEVRIDCHMF VTRVNMDLNI ENSTTRP00000003062/1-907 LRVSLSHGRT VPSQIMGLVV VAHALPPPTI NEVRIDCHMF VTRVNMDLNI 351 400 ENSBTAP00000005853/1-651 IYCENRISDY MDLTPVDIVG KRCYHFIHAE DVEGIRHSHL D--------- bmy_08478T0/1-690 IYCENRISDY MDLTPVDIVG KRCYHFIHAE DVEGIRHSHL DSTSLESLNP ENSP00000348460/1-933 IYCENRISDY MDLTPVDIVG KRCYHFIHAE DVEGIRHSHL D--------- BACU008704/1-367 IYCENRIIDY MDLTPXX--- ---------- ---------- ---------- ENSTTRP00000003062/1-907 IYCENRISDY MDLTPVDIVG KRCYHFIHAE DVEGIRHSHL D--------- 401 450 ENSBTAP00000005853/1-651 ---------- ---------- ---------- LLNKGQCVTK YYRWMQKNGG bmy_08478T0/1-690 ISLILQAKLS KSTFQADGDG PLDLLCGVDH VLNKGQCVTK YYRWMQKNGG ENSP00000348460/1-933 ---------- ---------- ---------- LLNKGQCVTK YYRWMQKNGG BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 ---------- ---------- ---------- LLNKGQCVTK YYRWMQKNGG 451 500 ENSBTAP00000005853/1-651 YIWIQSSATI AINAKNANEK NIIWVNYLLS NPEYKDTPMD IAQLPHLPEK bmy_08478T0/1-690 YIWIQSSATI AINAKNANEK NIIWVNYLLS NPEYKDTPMD IAQLPHLPEK ENSP00000348460/1-933 YIWIQSSATI AINAKNANEK NIIWVNYLLS NPEYKDTPMD IAQLPHLPEK BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 YIWIQSSATI AINAKNANEK NIIWVNYLLS NPEYKDTPMD IAQLPHLPEK 501 550 ENSBTAP00000005853/1-651 TSESSETSDS ESDSKDTS-- -EDNENSKSD EKGNQSENSE DPEPDRKKSG bmy_08478T0/1-690 TSESSETSDS ESDSKDTS-- -EDNENSKSD EKGNQSENSE DPEPDRKKSG ENSP00000348460/1-933 TSESSETSDS ESDSKDTSGI TEDNENSKSD EKGNQSENSE DPEPDRKKSG BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 TSESSETSDS ESDSKDTSGI TEDNENSKSD EKGNQSENSE DPEPDRKKSG 551 600 ENSBTAP00000005853/1-651 NTCDDDMHCN DDGHSCSNPD SRDSDDSFEH SDFENPKAAE DGGGGGFGAL bmy_08478T0/1-690 NTCDNDMNCN DDGHSSSNPD SRDSDDSFEH SDFENPKAAE D--GGGFGAL ENSP00000348460/1-933 NACDNDMNCN DDGHSSSNPD SRDSDDSFEH SDFENPKAGE D----GFGAL BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 NTCDNDMNCN DDGHSSSNPD SRDSDDSFEH SDFENPKAAE D--GGGFGAL 601 650 ENSBTAP00000005853/1-651 GRMQIKVERG YVESESDLRL QDCESLSSDS AKDSDSAGEA GAQASSKHQK bmy_08478T0/1-690 GPMQIKVER- YVESESDLRL QNCESLSSDS AKDSDSAGEA GAQASSKHQK ENSP00000348460/1-933 GAMQIKVER- YVESESDLRL QNCESLTSDS AKDSDSAGEA GAQASSKHQK BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 GPMQIKVER- YVESESDLRL QNCESLSSDS AKDSDSAGEA GAQASSKHQK 651 700 ENSBTAP00000005853/1-651 RKKRRKRQKG GSASRRRLSS ASSPGGLDAG LVEPPRLLSS PNSASVLKIK bmy_08478T0/1-690 RKKRRKRQKG GSASRRRLSS ASSPGGLDAG LVEPPRLLSS PNSASVLKIK ENSP00000348460/1-933 RKKRRKRQKG GSASRRRLSS ASSPGGLDAG LVEPPRLLSS PNSASVLKIK BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 RKKRRKRQKG GSASRRRLSS ASSPGGLDAG LVEPPRLLSS PNSASVLKIK 701 750 ENSBTAP00000005853/1-651 TEISEPINFD NDSSIWNYPP NREISRNESP YSMTKPPSSE HFPSPP---G bmy_08478T0/1-690 TEISEPINFD NDSSIWNYPP NREISRNESP YSMTKPPSSE HFPSPP---- ENSP00000348460/1-933 TEISEPINFD NDSSIWNYPP NREISRNESP YSMTKPPSSE HFPSPQGGGG BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 TEISEPINFD NDSSIWNYPP NREISRNESL YSMTKPLSSE HFLSLP---- 751 800 ENSBTAP00000005853/1-651 GGAGAGGLHV AIPDSVLTPP GADGTSSSAT ATARKTQFGT SAPAALAPVA bmy_08478T0/1-690 GGAGGGGLHV AIPDSVLTPP GADGT---AA AAARKTQFGT SAPAALAPVA ENSP00000348460/1-933 GGGGGGGLHV AIPDSVLTPP GADG------ AAARKTQFGA SATAALAPVA BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 GGAGGGGLHV AIPDSVLTPP GADG------ AAARKTQFGT SAPAALAPVA 801 850 ENSBTAP00000005853/1-651 SDPLSPPLSA SPRDKHP--- --GGGSGNGN GGGGPGTANS LLYTGDLEAL bmy_08478T0/1-690 SDPLSPPLSA SPRDKHP--- ----GGGSSG GGSGPGASNS LLYTGDLEAL ENSP00000348460/1-933 SDPLSPPLSA SPRDKHPGNG GGGGGGGGGA GGGGPSASNS LLYTGDLEAL BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 SDPLSPPLSA SPRDKHP--- ----GGGSSG GGSGPGASNS LLYTGDLEAL 851 900 ENSBTAP00000005853/1-651 QRLQAGNVVL PLVHRVTGTL AATSTAAQRV YTTGTIRYAP AEVTLAMQGN bmy_08478T0/1-690 QRLQAGNVVL PLVHRVTGTL AATSTAAQRV YTTGTIRYAP AEVTLAMQGN ENSP00000348460/1-933 QRLQAGNVVL PLVHRVTGTL AATSTAAQRV YTTGTIRYAP AEVTLAMQSN BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 QRLQAGNVVL PLVHRVTGTL AATSTAAQRV YTTGTIRYAP AEVTLAMQGN 901 950 ENSBTAP00000005853/1-651 LLPNAHAVNF VDVNSPGFGL DPKTPMEMLY HHVHRLNMSG PFGGAVSAAG bmy_08478T0/1-690 LLPNAHAVNF VDVNSPGFGL DPKTPMEMLY HHVHRLNMSG PFGGAVSAAS ENSP00000348460/1-933 LLPNAHAVNF VDVNSPGFGL DPKTPMEMLY HHVHRLNMSG PFGGAVSAAS BACU008704/1-367 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 LLPNAHAVNF VDVNSPGFGL DPKTPMEMLY HHVHRLNMSG PFGGAVSAAS 951 1000 ENSBTAP00000005853/1-651 LTQMPAGNVF TTAEGLFSTL PFPVYSNGIH AAQTLERKED bmy_08478T0/1-690 LTQMPAGNVF TTAEGLFSTL PFPVYSNGIH AAQTLERKED ENSP00000348460/1-933 LTQMPAGNVF TTAEGLFSTL PFPVYSNGIH AAQTLERKED BACU008704/1-367 ---------- ---------- ---------- ---------- ENSTTRP00000003062/1-907 LTQMPTGNVF TTAEGLFSTL PFPVYSNGIH AAQTLERKED