KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:27:41 2014 Check: 00 .. Name: ENSP00000313500/1-647 Len: 694 Check: 3666 Weight: 1.00 Name: ENSBTAP00000005861/1-654 Len: 694 Check: 386 Weight: 1.00 Name: bmy_15229T0/1-684 Len: 694 Check: 1953 Weight: 1.00 Name: ENSTTRP00000009936/1-645 Len: 694 Check: 1436 Weight: 1.00 // 1 50 ENSP00000313500/1-647 MACSLQKLFA VEEEFEDEDF LSAVEDAENR FTGSLPVNAG RLRPVSSRPQ ENSBTAP00000005861/1-654 QACSLQKLFA VEEEFEDEDF LSAVEDAENQ FAGSQPGNAG CLRPVSSRPQ bmy_15229T0/1-684 -ACSLQKLFA VEEEFEDEDF LSAVEDAENQ FAGTRPVNAG CLRPVSSRPQ ENSTTRP00000009936/1-645 MACSLQKLFA VEEEFEDEDF LSAVEDAENQ FVGSRPVNAG CLRPVSSRPQ 51 100 ENSP00000313500/1-647 ETVQAQSSRL LLLHPTAPSE ALGLPDLDLC LPASSTPSAD SRPSCIGAAP ENSBTAP00000005861/1-654 EA-------Q LLPQVTAPAE AAGLPALGRR LPTCGGPRAT GGALPTGTAA bmy_15229T0/1-684 EA-------Q LLPCPTAPSE AAGLPALGLX LSTSGMPRAV GGPPSTGAAP ENSTTRP00000009936/1-645 EA-------Q LLPCPTAPSE AAGLPALGLR LSTSGMPRAV EGPPSTGTAP 101 150 ENSP00000313500/1-647 LRPVSTSSSW IGNQRRVTVT EVLRE-TARP QSSALHPLLT FESQQQQVGG ENSBTAP00000005861/1-654 LRPVSTSSSW IGNQGRATLT EVLEE-PGRP QSSASHPQLT FRSKEQVIGG bmy_15229T0/1-684 LRPVSVSSSW TRNQGRVTLT EVLSETPVRP QSSVSHPQLT FKSKQQVIGG ENSTTRP00000009936/1-645 LRPVSMSSSW TGNQGRVTLT EVLSETPVRP QSSVSHPQLT FKSKQQVIGG 151 200 ENSP00000313500/1-647 FEGPEQDEFD KVLASMELEE PGMELECGVS SEAIPILPAQ QREGSVLAKK ENSBTAP00000005861/1-654 FEGPEQDEFD KVLASMELEG PSLELQLGVH SEAAGILPSW QQEDSTLAKK bmy_15229T0/1-684 FEGPEQDEFD KVLASMELEG PGMELELGVS GEATGILPTW RREDSTLAKK ENSTTRP00000009936/1-645 FEGPEQDEFD KVLASMELEG PVMELELGVS GEATGILPTW WWEDSTLAKK 201 250 ENSP00000313500/1-647 ARVVDLSGSC QKGPVPAIHK AGIMSAQDES LDPVIQCRTP RPPLRPGAVG ENSBTAP00000005861/1-654 TWVADLSRPC QRGPVPSPHV TGIPSA---- PDPTVLCRTP QPHLRPGTTG bmy_15229T0/1-684 ARAADLSRPC QKGPMPATHI AGIPSARDAP PDPVVRCGTP QSHLRPGATG ENSTTRP00000009936/1-645 ARAADLSRPC QKGPMPVTHI AGIPSARDVP LDPVVRCGTP QSHLRPGAMG 251 300 ENSP00000313500/1-647 HLPVPTALTV PTQQLHWEVC PQRSPVQALQ PLQAARGTIQ SSPQNRFPCQ ENSBTAP00000005861/1-654 NFPVPATSVV CAQPPHWEVS PVGPPPRTPQ PLQAAGRPIQ SSPQNRFPAQ bmy_15229T0/1-684 NLPVPTASVV RGQQPHWEVS PDGPPPQAPQ PLQAAGRLIQ SSPQNHFPGQ ENSTTRP00000009936/1-645 CLPVPTASVV RGQQPHWEVS PGGPRPQAPQ PLQAAGRLVQ SSPQNHFPGQ 301 350 ENSP00000313500/1-647 PFQSPSSWLS GKAHLPRPRT PNSSCSTPSR TSSGLFPRIP LQPQAPVSSI ENSBTAP00000005861/1-654 PFRSPNTCSS GKLRFLRPRT PNSSCAAPSK TSCGLFPQGP PQPRTPASSV bmy_15229T0/1-684 PFQSPNACLT GKPHFLTPRT PNSSCTTPSR TISGLFPRGP FQPRAPASSV ENSTTRP00000009936/1-645 PFPSPNACLT GKPHFLTPQT PNSSCATPSR TISGLFPRGP FQPRAPASSV 351 400 ENSP00000313500/1-647 GSPVGTPKG- -----PQGAL QTPIVTNHLV QLVTAASRTP QQPTHPSTRA ENSBTAP00000005861/1-654 LSPVCTPKGP SPSPLPQATL QTPIVTNHLV RLVTAASRTP QQPTCTSTRA bmy_15229T0/1-684 ESPVSTLKGP RPSPVPQAAL QTPIVTNHLV RLVTAANRTP QQSTCTSTRA ENSTTRP00000009936/1-645 KSPVSTLKG- -----PQAAL QTPIVTNHLV RLVTAANRTP QQPACTSTRA 401 450 ENSP00000313500/1-647 KTRRFPGPAG ILPHQQSGRS LEDIMVSAPQ TPTHGALAKF QTEIVASSQA ENSBTAP00000005861/1-654 KMRRFPGPAG LLPHQHSGKN LDDIMVSTPQ TPTHGALAKF RTELVTSSQA bmy_15229T0/1-684 KTRRFPGPAG LLPHQHSGKN LDDIMVSTPQ TPTHGALAKF RTEIVTSSQA ENSTTRP00000009936/1-645 KTRRFPGPAG LLPHQHSGKN LDDIMVSTPQ TPTHGALAKS RTEMVTSSQA 451 500 ENSP00000313500/1-647 SVEEDFGRGP WLTMKSTLGL DERDPSCFLC TYSIVMVLRK QAALKQLPRN ENSBTAP00000005861/1-654 SVEEDFGRGP WLTMKSTLGL DERDPTCFLC TYSIIMVLRK -AALKQLPGN bmy_15229T0/1-684 SVEEDFGRGP WLTMKSALGL DERDPTCFLC TYSIIMVLRK -AALKQLPRN ENSTTRP00000009936/1-645 SVEEDFGRGP -LTMKSALGL DERDPTCFLC TYSIIMVLRK QAALKQLPRN 501 550 ENSP00000313500/1-647 KVPNMAVMIK SLTRSTMDAS VVFKDPT--- ---------- --------GE ENSBTAP00000005861/1-654 KVPNMAVMIK SLTRSTMDAS VVFKDPT--- ---------- --------GE bmy_15229T0/1-684 KVPNMAVMIK SLTRSTVDAS AVFKDPTGPK PVAVLPLTLK LMGGVVFAGE ENSTTRP00000009936/1-645 KVPNMAVMIK SLTRSTVDAS AVFKDPT--- ---------- --------GE 551 600 ENSP00000313500/1-647 MQGTVHRLLL ETCQNELKPG SVLLLKQIGV FSPSLRNHYL NVTPNNLVHI ENSBTAP00000005861/1-654 MQGTVHRLLL ETRQNELKPG SVVLLKQIGV FSPSLRNHYL NVTPNNLVRV bmy_15229T0/1-684 MQGTVHRLLL ETRQNELKPG SVLLLKQIGV FSPSLRNHYL NVTPNNLVHV ENSTTRP00000009936/1-645 MQGTVHRLLL ETRQNELKPG SVLLLQQXXX XXXXXXXXXX XXXXXXXXXX 601 650 ENSP00000313500/1-647 YSPDSGDGSF LKPSQPFPK- ----DSGSFQ HDV---AAKP EEGFRTAQNL ENSBTAP00000005861/1-654 YSPDAGDGNI LKESQSFPQ- ----DLGSFH ESLQQESEKP GKGLQTAQNP bmy_15229T0/1-684 YSPDSGDGNF LKPSQPFPKI LRPQDPGSFH ESLQHETEKP GKGLRIAQNP ENSTTRP00000009936/1-645 XXXXXXXXXX XXXXXXXXX- ----DPGSFH ERLQHETEKP GKGLRIAQNP 651 700 ENSP00000313500/1-647 EAEASPEEE- LPEADDLDGL LSELPEDFFC GTSS------ ---- ENSBTAP00000005861/1-654 EAGATLEKE- LPEADDLDGL LSELPEDFFC GTSSWDCPKA GHPP bmy_15229T0/1-684 EAGASPEKE- LPEADDLDGL LSELPEDFFC GTSSWDSPKA GHPP ENSTTRP00000009936/1-645 EAGASPEKEL LPEADDLDGL LSELPEDFFC GTSSW----- ----