KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:42 2014 Check: 00 .. Name: BACU011114/1-695 Len: 747 Check: 3652 Weight: 1.00 Name: ENSP00000379865/1-467 Len: 747 Check: 3780 Weight: 1.00 Name: bmy_11988T0/1-467 Len: 747 Check: 817 Weight: 1.00 Name: ENSTTRP00000002617/1-466 Len: 747 Check: 2461 Weight: 1.00 Name: ENSBTAP00000005874/1-466 Len: 747 Check: 5310 Weight: 1.00 // 1 50 BACU011114/1-695 MEGQSVEELL AKAERDEAEK LQRITVHKEL ELEFDLGNLL ASDRNPPTGL ENSP00000379865/1-467 ---------- ---------- ---------- ---------- ---------- bmy_11988T0/1-467 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002617/1-466 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005874/1-466 ---------- ---------- ---------- ---------- ---------- 51 100 BACU011114/1-695 RHAGPTQEAE LRALARDNTQ LLINQLWQLP TDRVEEALVA RLPEPTTRLP ENSP00000379865/1-467 ---------- MAAAARARVA YLLRQ----- ---------- ---------- bmy_11988T0/1-467 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002617/1-466 ---------- -MAAPRDRVA HLLRQ----- ---------- ---------- ENSBTAP00000005874/1-466 ---------- -MAAARSRVV HLLRL----- ---------- ---------- 101 150 BACU011114/1-695 REKPVPRPRP LTRWQQFARL KGIRPKKKTN LFAKRIQAKK ERVAKNELNR ENSP00000379865/1-467 ---------- ---------- ---------- ---------- -------LQR bmy_11988T0/1-467 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002617/1-466 ---------- ---------- ---------- ---------- -------LQR ENSBTAP00000005874/1-466 ---------- ---------- ---------- ---------- -------LQR 151 200 BACU011114/1-695 LRNLARAHKR QLPSAAGLHP TGHQSKEELG RAVQVAKVST ASVGRFQERL ENSP00000379865/1-467 AACQCPTHSH TYSQAPGLSP SGKTTDYAFE MAVSNIR--- ---------- bmy_11988T0/1-467 ---------- ---------- ---------- MAVSNIR--- ---------- ENSTTRP00000002617/1-466 AACQCPSHSH TYSQAPGLSP SGKTTDYAFE MAVSNIR--- ---------- ENSBTAP00000005874/1-466 AACQCPSHSH TYSQAPGLSP SGKTTDYAFE MAVSTIR--- ---------- 201 250 BACU011114/1-695 PKEKAPRVSG KKRKFQPLFG DFAAEKKSQL EMLRIMNSKK PQLDVTRATN ENSP00000379865/1-467 ---------- ---------- -YGAAVTKEV GM-------- ---------- bmy_11988T0/1-467 ---------- ---------- -YGAGVTKEV GM-------- ---------- ENSTTRP00000002617/1-466 ---------- ---------- -YGAGVTKEV GM-------- ---------- ENSBTAP00000005874/1-466 ---------- ---------- -YGAGVTKEV GM-------- ---------- 251 300 BACU011114/1-695 KQMREEDQEE AAKRRKMSQK GKRKGGRQGP GDASAQVILI LTPKDLQNMG ENSP00000379865/1-467 ---------- ---------- ---------- ---------- ----DLKNMG bmy_11988T0/1-467 ---------- ---------- ---------- ---------- ----DLQNMG ENSTTRP00000002617/1-466 ---------- ---------- ---------- ---------- ----DLQNMG ENSBTAP00000005874/1-466 ---------- ---------- ---------- ---------- ----DLQSMG 301 350 BACU011114/1-695 AKNVCLMTDK NLSRLPPVQT VMDSFVKNGI NFKVYDNVRV EPTDRSFMEA ENSP00000379865/1-467 AKNVCLMTDK NLSKLPPVQV AMDSLVKNGI PFTVYDNVRV EPTDSSFMEA bmy_11988T0/1-467 AKNVCLMTDK NLSQLPPVQT VMDSFVKNGI NFKVYDNVRV EPTDRSFMEA ENSTTRP00000002617/1-466 AKNVCLMTDK NLSQLPPVQT VMDSLVKNGI NFKVYDNVRV EPTDRSFMEA ENSBTAP00000005874/1-466 AKNVCLMTDK NLSQLPPVQT VMDSLVKNGI NFKVYDHVRV EPTDTSFMEA 351 400 BACU011114/1-695 IEFARRGAFD AYVAVGGGST LDTCKAANLY ASSPGSDFLD YVNAPIGKGK ENSP00000379865/1-467 IEFAQKGAFD AYVAVGGGST MDTCKAANLY ASSPHSDFLD YVSAPIGKGK bmy_11988T0/1-467 IEFARRGAFD AYVAIGGGST IDTCKAANLY ASSPDSDFLD YVNAPIGKGK ENSTTRP00000002617/1-466 IEFARRGAFD AYVAMGGGST IDTCKAANLY ASSPDSDFLD YVNAPIGKGK ENSBTAP00000005874/1-466 IEFAKKGAFD AFLAVGGGST IDTCKAANLY SSSPDSDFLD YVNAPIGKGK 401 450 BACU011114/1-695 PVTAPLKPLI AVPTTSGTGS ETTGVAIFDY EYLKVKTGIA SRAIKPTLGL ENSP00000379865/1-467 PVSVPLKPLI AVPTTSGTGS ETTGVAIFDY EHLKVKIGIT SRAIKPTLGL bmy_11988T0/1-467 PVTAPLKPLI AVPTTSGTGS ETTGVAIFDY EHLKVKTGIA SRAIKPTLGL ENSTTRP00000002617/1-466 PVTVPLKPLI AVPTTSGTGS ETTGVAIFDY ERLKVKTGIA SRAIKPTLGL ENSBTAP00000005874/1-466 PVTVPLKPLI AVPTTSGTGS ETTGVAIFDY EHLKVKTGIA SRAIKPTLSL 451 500 BACU011114/1-695 IDPLHTLHMP ERVIANSGFD VLCHALESYT ALPYHMRSPC PANPITRPAY ENSP00000379865/1-467 IDPLHTLHMP ARVVANSGFD VLCHALESYT TLPYHLRSPC PSNPITRPAY bmy_11988T0/1-467 IDPLHTLYMP ERVIANSGFD VLCHALESYT ALPYHMRSPC PANPITRPAY ENSTTRP00000002617/1-466 IDPLHTLYMP ERVIANSGFD VLCHALESYT ALPYHMRSPC PANPITRPAY ENSBTAP00000005874/1-466 IDPLHTLHMP ERVVANSGFD VLCHALESYT ALPYHMRSPC PSSPITRPAY 501 550 BACU011114/1-695 QGSNPISDIW AVHALRIVAK YLK------- ---------- ---------- ENSP00000379865/1-467 QGSNPISDIW AIHALRIVAK YLK------- ---------- ---------- bmy_11988T0/1-467 QGSNPISDIW AVHALRIVAK YLKRYQKRSP VGPILGGITE RKISGRLILP ENSTTRP00000002617/1-466 QGSNPISDIW AVHALRIVAK YLK------- ---------- ---------- ENSBTAP00000005874/1-466 QGSNPISDIW AVHALRIVAK YLK------- ---------- ---------- 551 600 BACU011114/1-695 ---------- ---------- --RAVRNPDD LEARSNMHLA SAFAGIGFGN ENSP00000379865/1-467 ---------- ---------- --RAVRNPDD LEARSHMHLA SAFAGIGFGN bmy_11988T0/1-467 AALYSLGNAN VDVLLLGIYI IHRAVRNPDD LEARSNMHLA SAFAGIGFGN ENSTTRP00000002617/1-466 ---------- ---------- --RAVRNPDD LEARSNMHLA SAFAGIGFGN ENSBTAP00000005874/1-466 ---------- ---------- --RAIRNPDD LEARSNMHLA SAFAGIGFGN 601 650 BACU011114/1-695 AGVHLCHGMS YPISGLVKTY KAKDYNVDHP LVPHGLSVVL TSPAVFTFTA ENSP00000379865/1-467 AGVHLCHGMS YPISGLVKMY KAKDYNVDHP LVPHGLSVVL TSPAVFTFTA bmy_11988T0/1-467 AGVHLCHGMS YPISGLVKTY KAKDYNVDHP LVPHGLSVVL TSPAVFTFTA ENSTTRP00000002617/1-466 AGVHLCHGMS YPISGLVKTY KAKDYNVDHP LVPHGLSVVL TSPAVFTFTA ENSBTAP00000005874/1-466 AGVHLCHGMS YPISGLVKTY KAKDYNVDHP LVPHGLSVVL TSPAVFTFTS 651 700 BACU011114/1-695 QMSPEHHLEM AEILGADTHT ARVPDAGPIL ADTLRKFLFD LDVDDGLAAI ENSP00000379865/1-467 QMFPERHLEM AEILGADTRT ARIQDAGLVL ADTLRKFLFD LDVDDGLAAV bmy_11988T0/1-467 QMSPEHHLEM AEILGADTRT ARVPDAGPIL ADTLRKFLFD LDVDDGLAAI ENSTTRP00000002617/1-466 QMSPEHHLEM AEILGADTRT ARIPDAGPVL ADTLRKFLFD LDVDDGLAAI ENSBTAP00000005874/1-466 QMFPERHLEV AEILGADTRT ARRPDAGPVL ADTLRKFLFD LDVDDGLAAI 701 750 BACU011114/1-695 GYSKADIPAL VKGTLPQERV TKLAPR---P QSEEDLSVLF EASMKLY ENSP00000379865/1-467 GYSKADIPAL VKGTLPQERV TKLAPC---P QSEEDLAALF EASMKLY bmy_11988T0/1-467 GYSKADIPAL VKGTLPQVRD AAHPRCLLRS TRLQERHGPF GAS---- ENSTTRP00000002617/1-466 GYSKADIPAL VKGTLPQERV TKLAPR---P QSEEDLSALF EASMKLY ENSBTAP00000005874/1-466 GYSKADIPEL VKGTLPQERV TKLAPR---P QSEEDLSALF EASMKLY