KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:43 2014 Check: 00 .. Name: ENSTTRP00000005736/1-1182 Len: 1374 Check: 9732 Weight: 1.00 Name: ENSP00000418648/1-1347 Len: 1374 Check: 6224 Weight: 1.00 Name: BACU006749/1-1095 Len: 1374 Check: 3550 Weight: 1.00 Name: bmy_04321T0/1-1196 Len: 1374 Check: 5596 Weight: 1.00 Name: ENSBTAP00000005889/1-1345 Len: 1374 Check: 3243 Weight: 1.00 // 1 50 ENSTTRP00000005736/1-1182 ---------- ---------- ---------- ---------- ---------- ENSP00000418648/1-1347 MAEPRRVAFI SLSPVRRREA EYPGPEREPE YPREPPRLEP QPYREPARAE BACU006749/1-1095 ---------- ---------- ---------- ---------- ---------- bmy_04321T0/1-1196 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005889/1-1345 MAEPRRVAFI SLSPVRRREA EFPGTEREPE YPREPPRLEP QPYREPARTE 51 100 ENSTTRP00000005736/1-1182 ---------- ---------- ---------- ---------- ---------- ENSP00000418648/1-1347 PPAPREPAPR SDAQPPSREK PLPQREVSRA EPPMSLQREP PRPE----PP BACU006749/1-1095 ---------- ---------- ---------- ---------- ---------- bmy_04321T0/1-1196 ---------- ---------- ---------- ---MSLQREP PRPEPPPPPP ENSBTAP00000005889/1-1345 PPAPREVAPR SDAQPPPREK PLPQREVSRA EPPMSLQREP PRPE---PPP 101 150 ENSTTRP00000005736/1-1182 ---------- ---------- ---------- ---------- ---------- ENSP00000418648/1-1347 PPFPPLPLQP PPPRESASRA EQPPRPPRET VRLELVLKDP TDESCVEFSY BACU006749/1-1095 ---------- ---------- ---------- ---------- ---------- bmy_04321T0/1-1196 PPLPQLHLQP PPPRESASRA EPQQRPPKET VRLELVLKDP TDESCVEFSY ENSBTAP00000005889/1-1345 PPLPQLHLQP PPPRESTSRA EPQPRPPRET VRLELVLKDP TDESCVEFSY 151 200 ENSTTRP00000005736/1-1182 ---------- ---------- ---------- --KKPIYMED PFNDDHQERQ ENSP00000418648/1-1347 PELLLCGEQR ---------- ---------- --KKLIHTED PFNDEHQERQ BACU006749/1-1095 ---------- ---------- ---------- ---------- ---------- bmy_04321T0/1-1196 PELLLCGEQR IYSTLVEVIL ILLFLLPFTL KQKKPVYTED PFNDDHQERQ ENSBTAP00000005889/1-1345 PELLLCGEQR ---------- ---------- --KKPVYTED PFNDDHQERQ 201 250 ENSTTRP00000005736/1-1182 EVEMLAKKFE MKYGGKPRKH RKDLLQDLID IGFGYDETDP FIDNSEAYDE ENSP00000418648/1-1347 EVEMLAKKFE MKYGGKPRKH RKDRLQDLID IGFGYDETDP FIDNSEAYDE BACU006749/1-1095 ---MLAKKFE MKYGGKPRKH RKDRLQDLID IGFGYDETDP FIDNSEAYDE bmy_04321T0/1-1196 EVEMLAKKFE MKYGGKPRKH RKDRLQDLID IGFGYDETDP FIDNSEAYDE ENSBTAP00000005889/1-1345 EVEMLAKKFE MKYGGKPRKH RRDRLQDLID IGFGYDETDP FIDNSEAYDE 251 300 ENSTTRP00000005736/1-1182 LVPASLTTKY GGFYINTGTL QFRQASDTEE EDITDNQKHK PPKIPKMKED ENSP00000418648/1-1347 LVPASLTTKY GGFYINTGTL QFRQASDTEE DDITDNQKHK PPKVPKIKED BACU006749/1-1095 LVPASLTTKY GGFYINTGTL QFRQASDTEE EDITDNQKHK PPKIPKMKED bmy_04321T0/1-1196 LVPASLTTKY GGFYINTGTL QFRQASDTEE EDITDNQKHK PPKIPKMKED ENSBTAP00000005889/1-1345 LVPASLTTKY GGFYINTGTL QFRQASDTEE DDTTDNQKHK PPKIPKIKED 301 350 ENSTTRP00000005736/1-1182 DIEMKKRKRK EEGEKEKKPR KKVPKQLGVV ALNSHKSEKK KKRYKDSLSL ENSP00000418648/1-1347 DIEMKKRKRK EEGEKEKKPR KKVPKQLGVV ALNSHKSEKK KKRYKDSLSL BACU006749/1-1095 DIEMKKRKRK EEGEKEKKPR KKVPKQLGVV ALNSHKSEKK KKRYKDSLSL bmy_04321T0/1-1196 DIEMKKRKRK EEGEKEKKPR KKVPKQLGVV ALNSHKSEKK KKRYKDSLSL ENSBTAP00000005889/1-1345 DIEMKKRKRK EEGEKEKKPR KKVPKQLGVM ALNSHKSEKK KKRYKDSLSL 351 400 ENSTTRP00000005736/1-1182 AAMIRKFQKE KDALRKESNP KVPVNFSTSS LHKTPSAAVA LGNDVSDLNL ENSP00000418648/1-1347 AAMIRKFQKE KDALKKESNP KVPVTLSTPS LNKPPCAAAA LGNDVPDLNL BACU006749/1-1095 AAMIRKFQKE KDALRKESNP KVPVNFSTSS LNKTPSAAVA LGNDVSDLNL bmy_04321T0/1-1196 AAMIRKFQKE KDALRKESNP KVPVNFSTSS LNKTPSAAVA LGNDVSDLNL ENSBTAP00000005889/1-1345 AAMIRKFQKE KDALKKESNP KTPLNFSTSS LNKPPSAAVA LGNDVSDLNL 401 450 ENSTTRP00000005736/1-1182 NSADPDLPIF VSTNEHELFQ EAENALEMLD DFDFDRLLDA ASNGSPLSES ENSP00000418648/1-1347 SSGDPDLPIF VSTNEHELFQ EAENALEMLD DFDFDRLLDA ASDGSPLSES BACU006749/1-1095 NSADPDLPIF VSTNEHELFQ EAENALEMLD DFDFDRLLDA ASNGSPLSES bmy_04321T0/1-1196 NSADPDLPIF VSTNEHELFQ EAENALEMLD DFDFDRLLDA ASNGSPLSES ENSBTAP00000005889/1-1345 TSADPDLPIF VSTNEHELFQ EAENALEMLD DFDFDRLLDA ASNGSPLSES 451 500 ENSTTRP00000005736/1-1182 GGENGNTTQP TYASQVMPKV VPTLPEGLPV LLEKRIEDLR VAAKLFDEEG ENSP00000418648/1-1347 GGENGTTTQP TYTSQVMPKV VPTLPEGLPV LLEKRIEDLR VAAKLFDEEG BACU006749/1-1095 GGENGNTTQP TYASQVMPKV VPTLPEGLPV LLEKRIEDLR VAAKLFDEEG bmy_04321T0/1-1196 GGENGNTTQP TYASQVMPKV VPTLPEGLPV LLEKRIEDLR VAAKLFDEEG ENSBTAP00000005889/1-1345 GGENGNTTQP TYASQVMPKV VPTLPEGLPV LLEKRIEDLR VAAKLFDEEG 501 550 ENSTTRP00000005736/1-1182 RKKFFTQDMN NILLDIELQL QELGPVIRSS VYSHLEAFVP CNKETLVKRL ENSP00000418648/1-1347 RKKFFTQDMN NILLDIELQL QELGPVIRSG VYSHLEAFVP CNKETLVKRL BACU006749/1-1095 RKKFFTQDMN NILLDIELQL QELGPVIRSG VYSHLEAFVP CNKETLVKRL bmy_04321T0/1-1196 RKKFFTQDMN NILLDIELQL QELGPVIRSG VYSHLEAFVP CNKETLVKRL ENSBTAP00000005889/1-1345 RKKFFTQDMN NILLDIELQL QELGPVIRSG VYSHLEAFVP CNKETLVKRL 551 600 ENSTTRP00000005736/1-1182 KKLHLNVQDD RLREPLQKLK LAVSNVMPEQ LFKYQEDCQA RNQAKCAKFQ ENSP00000418648/1-1347 KKLHLNVQDD RLREPLQKLK LAVSNVMPEQ LFKYQEDCQA RSQAKCAKLQ BACU006749/1-1095 KKLHLNVQDD RLREPLQKLK LAVSNVMPEQ LFKYQEDCQA RNQAKCAKFQ bmy_04321T0/1-1196 KKLHLNVQDD RLREPLQKLK LAVSNVMPEQ LFKYQEDCQA RNQAKCAKFQ ENSBTAP00000005889/1-1345 KKLHLNVQDD RLREPLQKLK LAVSNVMPEQ LFKYQEDCQA RNQAKCAKFQ 601 650 ENSTTRP00000005736/1-1182 TDEEREKNGS EEDDDEKPGK RVIGPRKKFH WDDTIRTLLC NLVEIKLGCY ENSP00000418648/1-1347 TDEEREKNGS EEDDDEKPGK RVIGPRKKFH WDDTIRTLLC NLVEIKLGCY BACU006749/1-1095 TDEEREKNGS EEDDDEKPGK RVIGPRKKFH WDDTI----- ---------- bmy_04321T0/1-1196 TDEEREKNGS EEDDDEKPGK RVIGPRKKFH WDDTIRTLLC NLVEIKLGCY ENSBTAP00000005889/1-1345 TDEEREKNGS EEDDEEKPGK RVIGPRKKFH WDDTIRTLLC NLVEIKLGCY 651 700 ENSTTRP00000005736/1-1182 ELEPNKSQSA EDYLKSFMET EVKPLWPKXX XXXXMLFKES RSVHNHLTSA ENSP00000418648/1-1347 ELEPNKSQSA EDYLKSFMET EVKPLWPKGW MQARMLFKES RSVHNHLTSA BACU006749/1-1095 ---------- ---------- ---------- ---RMLFKES RSVHNHLTSA bmy_04321T0/1-1196 ELEPNKSQSA EDYLKSFMET EVKPLWPKGW MQARMLFKES RSVHNHLTSA ENSBTAP00000005889/1-1345 ELEPNKSQSA EDYLKSFMET EVKPLWPKGW MQARMLFKES RSVHNHLTSA 701 750 ENSTTRP00000005736/1-1182 PAKKKVIPAP KPKVKKVVVN TLSLHAFPTV VRECSPKKDQ KTPASLVASV ENSP00000418648/1-1347 PAKKKVIPAP KPKVKEVMVK TLPLHSFPTM LKECSPKKDQ KTPTSLVASV BACU006749/1-1095 PAKKKVIPAP KPK------- ---------- VKECSPKKDQ KTPASLVASV bmy_04321T0/1-1196 PAKKKVIPAP KPK------- ---------- VKECSPKKDQ KTPASLVASV ENSBTAP00000005889/1-1345 PAKKKVIPAP KPKVK--MVE TLFLHAFPTI VKECSPKKDQ KTPASSVASV 751 800 ENSTTRP00000005736/1-1182 GGPSTSSSTS AVASTSSSST PAQETICLDD SLDEELSFHP PALDLVSEAL ENSP00000418648/1-1347 SGPPTSSSTA AIAAASSSSA PAQETICLDD SLDEDLSFHS PSLDLVSEAL BACU006749/1-1095 GGPSTSSSAS AVASTSSSST PAQETICLDD SLDEELSFHP PALDLVSEAL bmy_04321T0/1-1196 GGPSTSSSTS AVASTSSSST PAQETICLDD SLDEELSFHP PALDLVSEAL ENSBTAP00000005889/1-1345 GGPSTSSSTS AVASTSSGST PVQETICLDD SLDEELSFHP PALDLVSEAL 801 850 ENSTTRP00000005736/1-1182 AVINNGNKGP PSGSRISMPT AKPRPGLREE KLASIMSKLP LATPKKLDST ENSP00000418648/1-1347 AVINNGNKGP PVGSRISMPT TKPRPGLREE KLASIMSKLP LATPKKLDST BACU006749/1-1095 AVINNGNKGP PAGSRISMPT AKPRPGLREE KLASIMSKLP LATPKKLDST bmy_04321T0/1-1196 AVINNGNKGP PAGSRISMPT AKPRPGLREE KLASIMSKLP LATPKKLDST ENSBTAP00000005889/1-1345 AVINNGNKGP PAGSRISMPT AKPRPGLREE KLASIMSKLP LATPKKLDST 851 900 ENSTTRP00000005736/1-1182 QTAHSSSLIA -HTGPVPKKP QDLAHTGXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418648/1-1347 QTTHSSSLIA GHTGPVPKKP QDLAHTGISS GLIAGSSIQN PKVSLEPLPA BACU006749/1-1095 QTAHSSSLIA GHTGPVPKKP QDLAHTGISS GLIAGSSIQN PKVSLEPLPA bmy_04321T0/1-1196 QTAHSSSLIA GHTGPVPKKP QDLAHTGISS GLIAGSSIQN PKVSLEPLPA ENSBTAP00000005889/1-1345 QTAHSSSLIA GHTGPVPKKP QDLAHTGISS GLIAGSSIQN PKVSLEPLPA 901 950 ENSTTRP00000005736/1-1182 XXXXXXXXXX XXXXXXXXXX XXXXXXXQAQ VAA-PHAL-T SEA-DASSLT ENSP00000418648/1-1347 RLLQQGLQRS SQIHTSSSSQ THVSSSSQAQ IAASSHALGT SEAQDASSLT BACU006749/1-1095 RLLQQGLQRS SQIHAASSSQ THVSSSSQAQ VAASSHALGT SEAQDASSLT bmy_04321T0/1-1196 RLLQQGLQRS SQIHASSSSQ THVSSSSQAQ VAASSHALGT SEAQDASSLT ENSBTAP00000005889/1-1345 RLLQQGLQRS SQIHASSSSQ THVSSSSQAQ VAASSHTLGT SEAQDASPLT 951 1000 ENSTTRP00000005736/1-1182 QV-KVHH--- AVQNYVSPLQ ATISKSQTNP VVKLSNNPQL SCSSPLIKSS ENSP00000418648/1-1347 QVTKVHQHSA VQQNYVSPLQ ATISKSQTNP VVKLSNNPQL SCSSSLIKTS BACU006749/1-1095 QVTKVHQHSA VQQNYVSPLQ ATISKSQTNP VVKLSNNPQL SCSSPLIKSS bmy_04321T0/1-1196 QVTKVHQHSA VQQNYVSPLQ ATISKSQTNP VVKLSNNPQL SCSSPLIKSS ENSBTAP00000005889/1-1345 QVTKVHQHSA VQQNYVSPLQ ATISKSQTNP VVKLSNNPQL SCSSPLTKTS 1001 1050 ENSTTRP00000005736/1-1182 DKPLMYRLPL STPTPGNGSQ GSHSLVSRTV PSTTTSSNYL AKAMVSQIST ENSP00000418648/1-1347 DKPLMYRLPL STPSPGNGSQ GSHPLVSRTV PSTTTSSNYL AKAMVSQIST BACU006749/1-1095 DKPLMYRLPL SAPPPGNGSQ GSHSLVSRTV PSTTTSSNYL AKAMVSQIPT bmy_04321T0/1-1196 DKPLMYRLPL SAPPPGNGSQ GSHSLVSRTV PSTTTSSNYL AKAMVSQIPT ENSBTAP00000005889/1-1345 DKPLMYRLPL STPPPGNGSQ GSHSLVSRTV PSTTTSTNYL AKAMVSQIST 1051 1100 ENSTTRP00000005736/1-1182 QGFKSPFSMA ASPKLAASPK PATSPKPLPS PKPSASPKPS QSAKPSVSTK ENSP00000418648/1-1347 QGFKSPFSMA ASPKLAASPK PATSPKPLPS PKPSASPKPS LSAKPSVSTK BACU006749/1-1095 QGFKSPFSMA ASPKLAASPK PATSPKPLPS PKPSASPKPS QSAKPSVSTK bmy_04321T0/1-1196 QGFKSPFSMA ASPKLAASPK PATSPKPLPS PKPSASPKPS QSAKPSVSTK ENSBTAP00000005889/1-1345 QGFKSPFSMA ASPKLASSPK PATSPKPLPS PKPSASPKPS QSAKPSVSTK 1101 1150 ENSTTRP00000005736/1-1182 LISKSNPTPK PTVSPSSSSP NALVAQSSHS SSNNPVHKQP SGINISRQSP ENSP00000418648/1-1347 LISKSNPTPK PTVSPSSSSP NALVAQGSHS STNSPVHKQP SGMNISRQSP BACU006749/1-1095 LISKSNPTPK PTVSPSPSSP NALVAQSSHS SGNNPVHKQP SGINISRQSP bmy_04321T0/1-1196 LISKSNPTPK PTVSPSPSSP NALVAQSSHS SGNNPVHKQP SGINISRQSP ENSBTAP00000005889/1-1345 LISKSNPTPK PTVSPSSSSP NALVAQSSHS SSNNPVHKQP SGMNISRQSP 1151 1200 ENSTTRP00000005736/1-1182 TLNLLPSNRT SGLPSTKNLQ APPKLTNSSS TGTVGKNSLS GIAVNVPACR ENSP00000418648/1-1347 TLNLLPSSRT SGLPPTKNLQ APSKLTNSSS TGTVGKNSLS GIAMNVPASR BACU006749/1-1095 TLNLLPSNRT SGLPSTKNLQ APPKLTNSSS TGTVGKNSLS GIAMNVPASR bmy_04321T0/1-1196 TLNLLPSNRT SGLPSTKNLQ APPKLTNSSS TGTVGKNSLS GIAMNVPASR ENSBTAP00000005889/1-1345 TLNLLPLNRT SGLPSTKNLQ APSKLTNSPS TGTVGKNSLS GIAMNVPASR 1201 1250 ENSTTRP00000005736/1-1182 GSNLNSSGAN RTSLSGXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS ENSP00000418648/1-1347 GSNLNSSGAN RTSLSGGTGS GTQGATKPLS TPHRPSTASG SSVVTASVQS BACU006749/1-1095 GSNLNSSGAS RTSLSGGTGS GTQGATKPLS TPHRPSSASG SSVVTASVQS bmy_04321T0/1-1196 GSNLNSSGAS RTSLSGGTGS GTQGATKPLS TPHRPSSASG SSVVTASVQV ENSBTAP00000005889/1-1345 GSNLNSSGAN RTSLSGGTGS GTQGATKPLS TPHRPSSASG SSVVAASVQS 1251 1300 ENSTTRP00000005736/1-1182 TAGASLLANA SPLTLMTSPL SVTNQNVTPF GMLGGLVPVT MPFQFPLELL ENSP00000418648/1-1347 TAGASLLANA SPLTLMTSPL SVTNQNVTPF GMLGGLVPVT MPFQFPLEIF BACU006749/1-1095 TAGASLLANA SPLTLMTSPL SVTNQNVTPF GMLGGLVPVT MPFQFPLELL bmy_04321T0/1-1196 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005889/1-1345 TAGASLLANA SPLTLMTSPL SVTNQNVTPF GMLGGLVPVT MPFQFPLELL 1301 1350 ENSTTRP00000005736/1-1182 GFGTDTAGVT ATSGSTSAAF HHSLTQNLLK GLQP-GAQHA ATLSHSPLPA ENSP00000418648/1-1347 GFGTDTAGVT TTSGSTSAAF HHSLTQNLLK GLQPGGAQHA ATLSHSPLPA BACU006749/1-1095 GFGTDTAGVT TTSGSTSAAF HHSLTQRVV- ------CPVP AYWVFFPVPV bmy_04321T0/1-1196 ---------- ---------- ------YLLK GLQP-GAQHA ATLSHSPLPT ENSBTAP00000005889/1-1345 GFGTDTAGVT TTSGSTSAAF HHSLTQNLLK GLQP-GAQHA AALSHAPLPT 1351 1400 ENSTTRP00000005736/1-1182 HLPQTFNDGG QS-KGDTKLP RKSQ ENSP00000418648/1-1347 HLQQAFHDGG QS-KGDTKLP RKSQ BACU006749/1-1095 KLPRITPILA RGIKREVILS ---- bmy_04321T0/1-1196 HLQQTFNDGG QS-KGDTKLP RKSQ ENSBTAP00000005889/1-1345 HVQQTFNDGG QS-KGDTKLP RKSQ