KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:45 2014 Check: 00 .. Name: ENSTTRP00000007418/1-818 Len: 965 Check: 4462 Weight: 1.00 Name: ENSBTAP00000005897/1-904 Len: 965 Check: 5397 Weight: 1.00 Name: ENSP00000396749/1-878 Len: 965 Check: 924 Weight: 1.00 Name: BACU017716/1-903 Len: 965 Check: 2170 Weight: 1.00 Name: bmy_06892T0/1-619 Len: 965 Check: 8923 Weight: 1.00 // 1 50 ENSTTRP00000007418/1-818 ---------- ---------- ---------- -IPVKYV--- ----WG---- ENSBTAP00000005897/1-904 MAHRGGERDF QTSARRMGTS LLFQLSVHER ELDLVFLDHS YAKPWSAHPD ENSP00000396749/1-878 MAHRGGERDF QTSARRMGTS LLFQLSVHER ELDLVFLDHS YAKPWSAHPD BACU017716/1-903 MAHRGGERDF QTSARRMGTS LLFQLSVHER ELDLVFLDHS YAKPWSAHPD bmy_06892T0/1-619 MAHRGGERDF QTSARRMGTS LLFQLSVHER ELDLVFLDHS YAKPWSAHPD 51 100 ENSTTRP00000007418/1-818 -----PISSL LYS------- --ESDVPIDV ETVTSTPVPL YDNQKARSVM ENSBTAP00000005897/1-904 ASSARPTRML FVTPRRQHES TIESDVPIDV ETVISTPVPL YDNQKARSVM ENSP00000396749/1-878 ASSARPTRML FVTPRRQHES TIESDVPIDV ETVTSTPMPL YDNQKARSVM BACU017716/1-903 ASSARPTRML FVTPRRQHES TIESDVPIDV ETVTSTPVPL YDNQKARSVM bmy_06892T0/1-619 ASSARPTRML FVTPRRQHES TIESDVPIDV ETVTSTPVPL YDNQKARSVM 101 150 ENSTTRP00000007418/1-818 NECERHVIFA RTDADAPPPP EDWEEHVN-- ---------- -RTGWTMAQN ENSBTAP00000005897/1-904 NECERHVIFA RTDADAPPPP EDWEEHVN-- ---------- -RTGWTLAQN ENSP00000396749/1-878 NECERHVIFA RTDADAPPPP EDWEEHVN-- ---------- -RTGWTMAQN BACU017716/1-903 NECERHVIFA RTDADAPPPP EDWEEHVN-- ---------- -RTGWTMAQN bmy_06892T0/1-619 NECERHVIFA RTDADAPPPP EDWEEHVNRE KNGKGRKSFS YRTGWTMAQN 151 200 ENSTTRP00000007418/1-818 KLFNKILKAL QSDRLARLAN EGACNEPVLR RVAVDKCARR VRQALASVSW ENSBTAP00000005897/1-904 KLFNKILKAL QSDRLARLAN EGACNEPVLR RVAVDKCARR VRQALASVSW ENSP00000396749/1-878 KLFNKILKAL QSDRLARLAN EGACNEPVLR RVAVDKCARR VRQALASVSW BACU017716/1-903 KLFNKILKAL QSDRLARLAN EGACNEPVLR RVAVDKCARR VRQALASVSW bmy_06892T0/1-619 KLFNKILKAL QSDRLARLAN EGACNEPVLR RVAVDKCARR VRQALASVSW 201 250 ENSTTRP00000007418/1-818 DTKLVQWLHT TLVETLSLPM LAAYLDALQT LKGKIPTLID RMLVSSNTKT ENSBTAP00000005897/1-904 DTKLIQWLHT TLVETLSLPM LAAYLDALQT LKGKIPTLID RMLVSSNTKT ENSP00000396749/1-878 DTKLIQWLHT TLVETLSLPM LAAYLDALQT LKGKIPTLID RMLVSSNTKT BACU017716/1-903 DTKLVQWLHT TLVETLSLPM LAAYLDALQT LKGKIPTLID RMLVSSNTKT bmy_06892T0/1-619 DTKLVQWLHT TLVETLSLPM LAAYLDALQT LKGKIPTLID RMLVSSNTKT 251 300 ENSTTRP00000007418/1-818 GAAGAEALSL LLKRPWDPAV GVLSHNKPSK LPGSPLILIA SSGPSSSVFP ENSBTAP00000005897/1-904 GAAGAEALSL LLKRPWDPAV GVLSHNKPSK LPGSPLILIA SSGPSSSVFP ENSP00000396749/1-878 GAAGAEALSL LLKRPWDPAV GVLSHNKPSK LPGSPLILIA SSGPSSSVFP BACU017716/1-903 GAAGAEALSL LLKRPWDPAV GVLSHNKPSK LPGSPLILIA PSGPSSSVFP bmy_06892T0/1-619 GAAGAEALSL LLKRPWDPAV GVLSHNKPSK LPGSPLILIA PSGPSSSVFP 301 350 ENSTTRP00000007418/1-818 TSRRHRFWQS QLSCLGKVIP VATHLLNNGS GVGVLQCLEH MIGAVRSKVL ENSBTAP00000005897/1-904 TSRRHRFWQS QLSCLGKVIP VATHLLSNGS GVGVLQCLEH MIGALRSKVL ENSP00000396749/1-878 TSRRHRFWQS QLSCLGKVIP VATHLLNNGS GVGVLQCLEH MIGAVRSKVL BACU017716/1-903 TSRRHRFWQS QLSCLGKVIP VATHLLNNGS GVGVLQCLEH MIGAVRSKVL bmy_06892T0/1-619 TSRRHRFWQS QLSCLGKVIP VATHLLNNGS GVGVLQCLEH MIGAVRSKVL 351 400 ENSTTRP00000007418/1-818 EIHSHFPHKP IILIGWNTGA LVACHVSVME YVTAVVCLGF PLLTVDGPRG ENSBTAP00000005897/1-904 EIHSHFPHKP IILIGWNTGA LVACHVSVME YVTAVVCLGF PLLTVDGPRG ENSP00000396749/1-878 EIHSHFPHKP IILIGWNTGA LVACHVSVME YVTAVVCLGF PLLTVDGPRG BACU017716/1-903 E--------- ---------- ---------- ---------- ---------- bmy_06892T0/1-619 EIHSHFPHKP IILIGWNTGA LVACHVSVME YVTAVVCLGF PLLTVDGPRG 401 450 ENSTTRP00000007418/1-818 DVDDPLLDMK TPVLFVIGQN SLQCHPEAME DFREKIRAEN SLVVVGGADD ENSBTAP00000005897/1-904 DVDDPLLDMK TPVLFVVGQN SLQCHPEAME DFREKIRAEN SLVVVGGADD ENSP00000396749/1-878 DVDDPLLDMK TPVLFVIGQN SLQCHPEAME DFREKIRAEN SLVVVGGADD BACU017716/1-903 DVDDPLLDMK TPVLFVIGQN SLQCHPEAME DFREKIRAEN SLVVVGGADD bmy_06892T0/1-619 DVDDPLLDMK TPVLFVIGQN SLQCHPEAME DFREKIRAEN SLVVVGGADD 451 500 ENSTTRP00000007418/1-818 NLRISKAKKK SEGLTQSMVD RCIQDEIVDF LTGVLTRAEG HVGSEPRDQD ENSBTAP00000005897/1-904 NLRISKAKKK SEGLTQSMVD RCIQDEIVDF LTGVLTRTEG HVGSEPRDQD ENSP00000396749/1-878 NLRISKAKKK SEGLTQSMVD RCIQDEIVDF LTGVLTRAEG HMGSEPRDQD BACU017716/1-903 NLRISKAKKK SEGLTQSMVD RCIQDEIVDF LTGVLTRAEG HVGSEPRDQD bmy_06892T0/1-619 NLRISKAKKK SEGLTQSMVD RCIQDEIVDF LTGVLTRAEG HMGSEPRDQD 501 550 ENSTTRP00000007418/1-818 AEKKKKPRDV ARRDLAFEVS ERGSRPASPA AKLPASPSGS EDLSSVSSSP ENSBTAP00000005897/1-904 AEKKKKPRDV ARRDLAFEVS ERGSRPASPA AKLPASPSGS EDLSSVSSSP ENSP00000396749/1-878 AEKKKKPRDV ARRDLAFEVP ERGSRPASPA AKLPASPSGS EDLSSVSSSP BACU017716/1-903 AEKKKKPRDV ARRDLAFEVS ERGSRPASPA AKLPASPSGS EDLSSVSSSP bmy_06892T0/1-619 AEKKKKPRDV ARRDLAFEVS ERGSRPASPA AKLPASPSGS EDLSSVSSSP 551 600 ENSTTRP00000007418/1-818 TSSPKTKVTT VASAQKSSQI GSTQLLKRHV QRTEAVLTHK QAQV------ ENSBTAP00000005897/1-904 TSSPKTKVTT VASSQKSSQI GSTQLLKRHV QRTEAVLTHR QAQAQFAAFL ENSP00000396749/1-878 TSSPKTKVTT VTSAQKSSQI GSSQLLKRHV QRTEAVLTHK QAQV------ BACU017716/1-903 TSSPKTKVTT VASAQKSSQI GSTQLLKRHV QRTEAVLTHK QAQAQFAAFL bmy_06892T0/1-619 TSSPKTKVTT VASAQKSSQI GSTQLLKRHV QRTEAVLTHK QAQV------ 601 650 ENSTTRP00000007418/1-818 ---------- ---------- PVSSEQTEEA EKEDLRVQLK RHHPSSPLPG ENSBTAP00000005897/1-904 KQNMLVRKAL PPGTSSCLFV PISSEQTEEA EKEELRVQLK RHHPSSPLAG ENSP00000396749/1-878 ---------- ---------- PISSEPPEEG EKEDLRVQLK RHHPSSPLPG BACU017716/1-903 TQNMLVRKAL PPGTSSCLFV PVSSEQTEEA EKEDLRVQLK RHHPSSPLPG bmy_06892T0/1-619 ---------- ---------- --------EP KDQDL----- ---------- 651 700 ENSTTRP00000007418/1-818 SKTSKRPKIK VSLISQGDTA GGPCTPSQGG APEAAGGKPI TMTLGQASTG ENSBTAP00000005897/1-904 SKTCKRPKIK VSLISQGDAA GGPCPPSSGG APEAAGGKPL TMTLGQASTG ENSP00000396749/1-878 SKTSKRPKIK VSLISQGDTA GGPCAPSQGS APEAAGGKPI TMTLGQASAG BACU017716/1-903 SKTSKRPKIK VSLVSQGDTA GGPCTPSQGG APEAAGGKPI TMTLGQASAG bmy_06892T0/1-619 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000007418/1-818 AKELTGLLTT TKSNAAEGGV SASPASSVVS SSTAPSALHT LQSRLVATSP ENSBTAP00000005897/1-904 ATELTGLLAT AKSGASEGCV SASQTSSVVS SSTSPSALHT LQSRLVAPSP ENSP00000396749/1-878 AKELTGLLTT AKSSSSEGGV SASPVPSVVS SSTAPSALHT LQSRLVATSP BACU017716/1-903 AKELTGLLTT TKSSAAEGGV SASPASSVVS SSTAPSALHT LQSRLVATSP bmy_06892T0/1-619 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000007418/1-818 GSSLPGAASA SSLLQGLSFS LQDIGSKTSG LPANPSPGPA PQATSVKLPT ENSBTAP00000005897/1-904 GSSLPGAASA SSLLQGLSFS LQDISSKASG LPASPSPGPA PQAASVKLPA ENSP00000396749/1-878 GSSLPGATSA SSLLQGLSFS LQDISSKTSG LPANPSPGPA PQATSVKLPT BACU017716/1-903 GSSLPGAASA SSLLQGLSFS LQDISSKTSG LPANPSPGPA PQATSVKLPT bmy_06892T0/1-619 ---------A PDLLRGCPY- ---------- ---------- ---------- 801 850 ENSTTRP00000007418/1-818 PMQSLGAITT GTSTIVRTIP VATTLSSLGA TPGGKPTAIH QLLTNGGLAK ENSBTAP00000005897/1-904 PVQSLGAVTT GAGSIVRAVP VATALSSLGA APGGKPTAIH QLLTNGGLAK ENSP00000396749/1-878 PMQSLGAITT GTSTIVRTIP VATTLSSLGA TPGGKPTAIH QLLTNGGLAK BACU017716/1-903 PMQSLGAITT GTSTIVRTIP VATTLSSLGA TPGGKPTAIH QLLTNGGLAK bmy_06892T0/1-619 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000007418/1-818 LASSLPGLAQ ISNQASGLKV P--ITLTLRG QPS--ITLSP MGSGAA---- ENSBTAP00000005897/1-904 LASSLPGLAQ ISNQASGLKV PTTITLTLRG QPSRITTLSP VGTGAA---- ENSP00000396749/1-878 LASSLPGLAQ ISNQASGLKV PTTITLTLRG QPSRITTLSP MGSGAA---- BACU017716/1-903 LASSLPGLAQ ISNQASGLKV PTTITLTLRG QPSRITTLSP MGSGAAXXXX bmy_06892T0/1-619 ---------- ---------- ---------- ---------- ---GGA---- 901 950 ENSTTRP00000007418/1-818 ---------- ----QSEEPT SQA------L PSSSQRLPPA P--------- ENSBTAP00000005897/1-904 ---------- ----PSEEPA SQA------L PSSSQRLPRP P--------- ENSP00000396749/1-878 ---------- ----PSEESS SQV------L PSSSQRLPPA P--------- BACU017716/1-903 XXXXXXXXQV SLPGKTEDTA SSIGKLGAGW PIGGAGLVGR PDTHPHSEFV bmy_06892T0/1-619 ---------- ----NKEQK- ---------- ---------- ---------- 951 1000 ENSTTRP00000007418/1-818 ---------- ----- ENSBTAP00000005897/1-904 ---------- ----- ENSP00000396749/1-878 ---------- ----- BACU017716/1-903 ALLLLGFCFC FLIEV bmy_06892T0/1-619 ---------- -----