KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:46 2014 Check: 00 .. Name: ENSP00000343925/1-530 Len: 560 Check: 1833 Weight: 1.00 Name: ENSBTAP00000005899/1-527 Len: 560 Check: 5220 Weight: 1.00 Name: bmy_12356T0/1-298 Len: 560 Check: 8819 Weight: 1.00 Name: BACU015410/1-444 Len: 560 Check: 401 Weight: 1.00 Name: ENSTTRP00000000485/1-527 Len: 560 Check: 4730 Weight: 1.00 // 1 50 ENSP00000343925/1-530 MDIKNSPSSL NSPSSYNCSQ SILPLEHGSI YIPSSYVDSH HEYPAMTFYS ENSBTAP00000005899/1-527 MDVKNSPSSL NSPVSYNCGQ SILPLEPGPI YLPSSYVESR HEYSAVTFYS bmy_12356T0/1-298 MDIKNSPSSL NSPVSYNCSQ SILPLEPGPI YIPSSYVENH HEYSAMTFYS BACU015410/1-444 MDIKNSPSSL NSPVSYNCSQ SILPLEPGPI YIPSSYVESH HEYSAMTFYS ENSTTRP00000000485/1-527 MDIKNSPSSL NSPVSYNCSQ SILPLEPGPI YIPSSYVESH HEYSAMTFYS 51 100 ENSP00000343925/1-530 PAVMNYSIPS NVTNLEGGPG RQTTSPNVLW PTPGHLSPLV VHRQLSHLYA ENSBTAP00000005899/1-527 PAVMNYSIPN NS---EDGPG RQTTSPNVLW PTPGHLSPLA IHCQPSVLYA bmy_12356T0/1-298 PAVMNYSIPN NS---EGGPG RQTTSPNVLW PTPGHLSPLA IHCQSSLLYA BACU015410/1-444 PAVMNYSIPN NS---EGGPG RQTTSPNVLW PTPGHLSPLA IHCQSSLLYA ENSTTRP00000000485/1-527 PAVMNYSIPN NS---EGGPG RQTTSPNVLW PTPGHLSPLA IHCQSSLLYA 101 150 ENSP00000343925/1-530 EPQKSPWCEA RSLEHTLPVN RETLKRKVSG NRCASPVTGP GSKRDAHFCA ENSBTAP00000005899/1-527 EPQKSPWRET RSLEHTLPVN RETLKRKASG SSCASPATSP SSKRDAHFCA bmy_12356T0/1-298 EPQKSPWCET RSLEHTLPGN RETLKRKASG SSCASPVTSP SSKRDAHFCA BACU015410/1-444 EPQKSPWCET RSLEHTLPGN RETLKRKASG SSCASPVTSP SSKRDAHFCA ENSTTRP00000000485/1-527 EPQKSPWCET RSLEHTLPGN RETLKRKASG SSCASPVTSP SSKRDAHFCA 151 200 ENSP00000343925/1-530 VCSDYASGYH YGVWSCEGCK AFFKRSIQGH NDYICPATNQ CTIDKNRRKS ENSBTAP00000005899/1-527 VCSDYASGYH YGVWSCEGCK AFFKRSIQGH NDYICPATNQ CTIDKNRRKS bmy_12356T0/1-298 VCSDYASGYH YGVWSCEGCK AFFKRSIQG- ---------- ---------- BACU015410/1-444 VCSDYASGYH YGVWSCEGCK AFFKRSIQGH NDYICPATNQ CTIDKNRRKS ENSTTRP00000000485/1-527 VCSDYASGYH YGVWSCEGCK AFFKRSIQGH NDYICPATNQ CTIDKNRRKS 201 250 ENSP00000343925/1-530 CQACRLRKCY EVGMVKCGSR RERCGYRLVR RQRSADEQLH CAGKAKRSGG ENSBTAP00000005899/1-527 CQACRLRKCY EVGMVKCGSR RERCGYRIVR RQRNSDEQLH CLSKTKRNGG bmy_12356T0/1-298 ---------- ---------- ---------- ---------- ---------- BACU015410/1-444 CQACRLRKCY EVGMVKCGSR RERCGYRVVR RQRNSDEQLH CLSKAKKNGG ENSTTRP00000000485/1-527 CQACRLRKCY EVGMVKCGSR RERCGYRVVR RQRNSDEQLH CLSKAKKNGG 251 300 ENSP00000343925/1-530 HAPRVRELLL DALSPEQLVL TLLEAEPPHV LISRPSAPFT EASMMMSLTK ENSBTAP00000005899/1-527 PMTRVKELLL SALSPEQLVL TLLEAEPPHV LISRPSTPFT EASMMMSLTK bmy_12356T0/1-298 ---------- ---------- ---------- ---------- ---------- BACU015410/1-444 HVTRVKELLL SALSPEQLVL TLLEAEPPHV LVSRPSTPFT EASMMMSLTK ENSTTRP00000000485/1-527 HVTRVKELLL SALSPEQLVL TLLEAEPPHV LVSRPSTPFT EASMMMSLTK 301 350 ENSP00000343925/1-530 LADKELVHMI SWAKKIPGFV ELSLFDQVRL LESCWMEVLM MGLMWRSIDH ENSBTAP00000005899/1-527 LADKELVHMI SWAKKIPGFV ELSLYDQVRL LESCWLEVLM VGLMWRSIDH bmy_12356T0/1-298 ---------- --------FV ELSLYDQVRL LESCWLEVLM VGLMWRSIDH BACU015410/1-444 LADKELVHMI GWAKKIPGFV ELSLYDQVRL LESCWLEVLM VGLMWRSIDH ENSTTRP00000000485/1-527 LADKELVHMI GWAKKIPGFV ELSLYDQVRL LESCWLEVLM VGLMWRSIDH 351 400 ENSP00000343925/1-530 PGKLIFAPDL VLD------- ---------- --------RD EGKCVEGILE ENSBTAP00000005899/1-527 PGKLIFAPDL ILD------- ---------- --------RD EGKCVEGILE bmy_12356T0/1-298 PGKLIFAPDL ILD------- ---------- --------RD EGKCVEGILE BACU015410/1-444 PGKLIFAPDL VLDRLLQREN LNLLRMRGKS GYLSLFLTRD EGKCVEGILE ENSTTRP00000000485/1-527 PGKLIFAPDL VLD------- ---------- --------RD EGKCVEGILE 401 450 ENSP00000343925/1-530 IFDMLLATTS RFRELKLQHK EYLCVKAMIL LNS-----SM YPLVTATQDA ENSBTAP00000005899/1-527 IFDMLLATTS RFRELKLQHK EYLCVKAMIL LNS-----SM YPSATAPQEA bmy_12356T0/1-298 IFDMLLATTS RFRELKLQHK EYLCVKAMIL LNSNEVCESL FPAAP----- BACU015410/1-444 IFDMLLATTS RFRELKLQHK EYLCVKAMIL LNS-----SL EEHVP----- ENSTTRP00000000485/1-527 IFDMLLATTS RFRELKLQHK EYLCVKAMIL LNS-----SV YPSAEAPQEA 451 500 ENSP00000343925/1-530 DSSRKLAHLL NAVTDALVWV IAKSGISSQQ QSMRLANLLM LLSHVRHASN ENSBTAP00000005899/1-527 DSGRKLTHLL NAVTDALVWV IAKSGMSSQQ QSMRLANLLM LLSHVRHASN bmy_12356T0/1-298 ---------- ---------- ----NVSSKD DKVQSQAAVF L--------- BACU015410/1-444 ---------- ------LCW- -GEMG----- ---------- ---------- ENSTTRP00000000485/1-527 DSSRKLAHLL NAVTDALVWV IAKSGIPSQQ QSVRLANLLM LLSHVRHASN 501 550 ENSP00000343925/1-530 KGMEHLLNMK CKNVVPVYDL LLEMLNAHVL RGCKSSITGS ECSPAEDSKS ENSBTAP00000005899/1-527 KGMEHLLNMK CKNVVPVYDL LLEMLNAHTL RGNKSLVTGS ERNLVEDSES bmy_12356T0/1-298 -GFE------ ---------- ---------- ---------- ---------- BACU015410/1-444 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000485/1-527 KGMEHLLNMK CKNVVPVYDL LLEMLNAHTL RGSKSSVTGS ECSLVEESES 551 600 ENSP00000343925/1-530 KEGSQNPQSQ ENSBTAP00000005899/1-527 KEGSQKPQAQ bmy_12356T0/1-298 ---------- BACU015410/1-444 ---------- ENSTTRP00000000485/1-527 KEGSQNPQAQ