KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:49 2014 Check: 00 .. Name: ENSP00000414415/1-1111 Len: 1135 Check: 6355 Weight: 1.00 Name: ENSBTAP00000005918/1-1065 Len: 1135 Check: 3177 Weight: 1.00 Name: ENSTTRP00000016103/1-1107 Len: 1135 Check: 6766 Weight: 1.00 Name: bmy_02774T0/1-1088 Len: 1135 Check: 612 Weight: 1.00 Name: BACU020518/1-1084 Len: 1135 Check: 347 Weight: 1.00 // 1 50 ENSP00000414415/1-1111 MEMDAPRPPS LAVPGAASRP GRLLDGGHGR QQVQALSSQL LEVIPDSMRK ENSBTAP00000005918/1-1065 ---------- ---------- ---------- ---------- -------MRK ENSTTRP00000016103/1-1107 AGMDAL-PPS IGIPGAMRPG RPL---GARR KQIQVLSPQL LAAIPDSMRK bmy_02774T0/1-1088 ---------- ---------- ---------- ---------- -------MRK BACU020518/1-1084 ---------- ---------- --------RR KQIQALSPQL LAAIPDPMRK 51 100 ENSP00000414415/1-1111 QEVRTGREAG QGHGTGSPAE QVKALMDLLA GKGSQGSQAP QALDRTPDAP ENSBTAP00000005918/1-1065 QELRPGGETG QGHTASSPAE QVKALVDLLA GKGGQGPQAP QPPNRTPECP ENSTTRP00000016103/1-1107 QEVHTGREAG QGHGAGSPAE QVKALVDLLA GKGSQGSQIL QPPDRTPESL bmy_02774T0/1-1088 QEVHTSREAG QGHGAGSPAE QVKALVDLLA GKGSQGSQAP QPPDRTPESP BACU020518/1-1084 QEVHTSREAG QGHGAGSPAE QVKALVDLLA GKGSQGSQAL QPPDRTPESP 101 150 ENSP00000414415/1-1111 LGPCSNDSRI QRHRKALLSK VGGGPELGGP WHRLASLLLV EGLTDLQLRE ENSBTAP00000005918/1-1065 LKPRGNDLKI QKHREALLNR TGGGPELGSP SPRLTSLLMV EGLTDLQLRE ENSTTRP00000016103/1-1107 LRPHGNDLRI QRHREALLNR MGGSPELGSP SSRLTSLLLV EDLMDLQLRE bmy_02774T0/1-1088 LRPHGNDLRI QRHREALLNR MGGSPELGSP SPRLTSLLLV EGLMDLQLRE BACU020518/1-1084 LRPHGNDLRI QRHREALLNR MGGSPELGSP SPRLTSLLLV EGLMDLQLRE 151 200 ENSP00000414415/1-1111 HDFTQVEATR GGGHPARTVA LDRLFLPLSR VSVPPRVSIT IGVAGMGKTT ENSBTAP00000005918/1-1065 HDFTQVEATR GRWCSAKTIA LDRLFLPLSR VSIPPRISIT IGVAGVGKTT ENSTTRP00000016103/1-1107 HDFTQVEATR GGWCSDRTIA LDRLFLPLSR VSIPPRISIT IGVAGVGKTT bmy_02774T0/1-1088 HDFTQVEATR GGWCSARTIA LDRLFLPLSR VSIPPRISIT IGVAGVGKTT BACU020518/1-1084 HDFTQVEATR GGWCSARTIA LDRLFLPLSR VSIPPRISIT IGVAGVGKTT 201 250 ENSP00000414415/1-1111 LVRHFVRLWA HGQVGKDFSL VLPLTFRDLN THEKLCADRL ICSVFPHVGE ENSBTAP00000005918/1-1065 LVRNFVHLWA RGQVGKDFSL VLPLTFRDLN THEKLSADRL LRSVFPHTGE ENSTTRP00000016103/1-1107 LVRNFVYLWA RGQMGKDFSL VLPLTFRDLN THEKLSADRL VRSVFPHAGE bmy_02774T0/1-1088 LVRNFVHLWA RGQVGKDFSL VLPLTFRDLN THEKLSADRL VRSVFPHAGE BACU020518/1-1084 LVRNFVHLWA RGQVGKDFSL VLPLTFRDLN THEKLSADRL VHSVFPHAGE 251 300 ENSP00000414415/1-1111 PSLAVAVPAR ALLILDGLDE CRTPLDFSNT VACTDPKKEI PVDHLITNII ENSBTAP00000005918/1-1065 AGLASAVLSK ALLVLDGLDE CKTPLDFSNT VACMDPKKEI QVDHLITNII ENSTTRP00000016103/1-1107 TGLASAALTK VLLVLDGLDE CKMPLDFSNT VACRDPKKEI QVDHLITNII bmy_02774T0/1-1088 TGLASAALTK VLLVLDGLDE CKTPLDFSNT VPCTDSKKEI QVDHLITNII BACU020518/1-1084 TGLASAALTK VLLVLDGLDE CKTPLDFSNT VPCTDSKKEI QVDQLITNII 301 350 ENSP00000414415/1-1111 RGNLFPEVSI WITSRPSASG QIPGGLVDRM TEIRGFNEEE IKVCLEQMFP ENSBTAP00000005918/1-1065 RGNLFPEVSV WITSRPGAAG QIPGGLVDRM TEIRGFSEEE IKTCLEQMFP ENSTTRP00000016103/1-1107 RGNLFPGVSV WVTSRPSAAG QIPGGLVDRM TEIRGFNEEE IKMCLGQMFP bmy_02774T0/1-1088 RGNLFPGVSV WVTSRPSAAG QIPGGLVDRM TEIRGFNEEE IKMCLGQMFP BACU020518/1-1084 RGNLFPGVSV WVTSRPSAAG QIPGGLVDRM TEIRGFNEEE IKMCLGQMFP 351 400 ENSP00000414415/1-1111 EDQALLGWML SQVQADRALY LMCTVPAFCR LTGMALGHLW RSRTGPQDAE ENSBTAP00000005918/1-1065 EDPVLTGWVL SQVQADRTLY LMCTVPAFCR LVGAALGHLH RKRPGPPDAE ENSTTRP00000016103/1-1107 EDQVLSGWVL SQMQADRPLY LMCAVPAFCQ LVGSVLGHLH RNRPGLQDAE bmy_02774T0/1-1088 EDQVLSGWVL RQMQADRALY LMCTVPAFCR LVGSVLGHLH RNRPGPQDAE BACU020518/1-1084 EDQVLSGWVL SQMQADRALY LMCAVPAFCR LVGLVLGHLH RNRPGPHDAE 401 450 ENSP00000414415/1-1111 LWPPRTLCEL YSWYFRMALS GEGQEKGKAS PRIEQVAHGG RKMVGTLGRL ENSBTAP00000005918/1-1065 LWPPRTLCEL YSWYFRVALG GEGQEKAKAS PRIEQVAHGC RKLVGTLGRL ENSTTRP00000016103/1-1107 PWPPRTLCEL YSWYFRMALS REGQEKGKVS PRIEQLAHGC RKMVGTLGRL bmy_02774T0/1-1088 LWPPRTLCEL YSWYFRMALS REGQEKCKAS PRIEQLAHGC RKMVGTLGRL BACU020518/1-1084 LWPPRTLCEL YSWYFRMALS REGQEKCKAS PRIEQLAHGC RKMVGTLGRL 451 500 ENSP00000414415/1-1111 AFHGLLKKKY VFYEQDMKAF GVDLALLQGA PCSCFLQREE TLASSVAYCF ENSBTAP00000005918/1-1065 AFHGLVRKKY VFYEPDLKVL GVDLVLLQTA LCGRFLQREE TLASAAAYCF ENSTTRP00000016103/1-1107 AFHGLVRKKY VFYEPDLKVF GVDLALLQTA PCSCFLQREE TLASSAAYYF bmy_02774T0/1-1088 AFHGLVRKKY VFYEPDLKVF GVDLALLQTA PCSCFLQREE TLASSAAYYF BACU020518/1-1084 AFHGLVRKKY VFYEPDLKVF GVDLALLQTA PCSCFLQREE TLASSAAYYF 501 550 ENSP00000414415/1-1111 THLSLQEFVA AAYYYGASRR AIFDLFTESG VSWPRLGFLT HFRSAAQRAM ENSBTAP00000005918/1-1065 THLSLQEFLA AAYYCSASKR AIFDLFTEGG VSWPRLGFLT HFRSAAQRAM ENSTTRP00000016103/1-1107 THLSLQEFVA AAYYYSASKR AIFDLFTEGG MSWPQLGFLT HFRSAAQRAM bmy_02774T0/1-1088 THLSLQEFVA AAYYYSASKR AIFDLFTEGG MSWPRLGFLT HFRSAAQRAM BACU020518/1-1084 THLSLQEFVA AAYYYSASKR AIFDLFTEGG MSWPRLGFLT HFRSAAQRAM 551 600 ENSP00000414415/1-1111 QAEDGRLDVF LRFLSGLLSP RVNALLAGSL LAQGEHQAYR TQVAELLQGC ENSBTAP00000005918/1-1065 QAEDGRLDVF LRFLSGLLSP RVNALLAGSL LTQGEHQGYQ AQVAELLQGC ENSTTRP00000016103/1-1107 QAEDGRLDVF LRFLSGLLSP RVNALLAGSL LTQGEHQGYR AQVAELLKSC bmy_02774T0/1-1088 QAEDGRLDVF LRFLSGLLSP RVNALLAGSL LTQGEHQGYR AQVAELLQGC BACU020518/1-1084 QAEDGRLDVF LRFLSGLLSP RVNALLAGSL LTQGEHQGYR AQVAELLQGC 601 650 ENSP00000414415/1-1111 LRPDAAVCAR AINVLHCLHE LQHTELARSV EEAMESGALA RLTGPAHRAA ENSBTAP00000005918/1-1065 LRPDVAVCAR AINVLHCLRE LQHTELARSV EEAVASGGLA RLTSPPHRAA ENSTTRP00000016103/1-1107 LRPNTVVCAR AINILHCLRE LQHTELAHSV EEAMASGGLA GLTSPQHRAA bmy_02774T0/1-1088 LRPNMVVCAR AINVLHCLRE LQHTELAHSV EEAMASGGLA GLTSPPHRAA BACU020518/1-1084 LRPNMVVCAR AINVLHCLRE LQHTELAHSV EEAMASGGLA GLTSPPHRAA 651 700 ENSP00000414415/1-1111 LAYLLQVSDA CAQEANLSLS LSQGVLQSLL PQLLYCRKLR LDTNQFQDPV ENSBTAP00000005918/1-1065 LAYLLQVSDV CAWEAPLPLC LSPGVLQSLL PQLLYCRSLR LDTNQFQDPV ENSTTRP00000016103/1-1107 LAYLLQVSDV CTQEANLPLY LSQGVLQSLL PQLLYCRSLR LDTNQFQDPM bmy_02774T0/1-1088 LAYLLQVSDV CAQEANLPLY LSQGVLQSLL PQLLYCRSLR LDTNQFQDPM BACU020518/1-1084 LAYLLQVSDV CAQEANLPLY LSQGVLQSLL PQLLYCRSLR LDTNQFQDPM 701 750 ENSP00000414415/1-1111 MELLGSVLSG KDCRIQKISL AENQISNKGA KALARSLLVN RSLTSLDLRG ENSBTAP00000005918/1-1065 MELLGSVLSG KDCRIQRISL AENQISNKGA KALARSLLVN RSLTTLDLRS ENSTTRP00000016103/1-1107 MELLGSVLSG KDCRIQRISL AENQISNKGA KALARSLLVN RSLTTLDLRS bmy_02774T0/1-1088 MELLGSVLSG KDCRIQRISL AENQISNKGA KALARSLLVN RSLTTLDLHS BACU020518/1-1084 MELLGSVLSG KDCRIQRISL AENQISNKGA KALARSLLVN RSLTTLDLHS 751 800 ENSP00000414415/1-1111 NSIGPQGAKA LADALKINRT LTSLSLQGNT VRDDGARSMA EALASNRTLS ENSBTAP00000005918/1-1065 NSIGPQGAKA LADALKINRT LASLSLQSNR IRDDGARCMA EALATNRTLS ENSTTRP00000016103/1-1107 NSIGPLGAKA LADALKINRT LASLCLQSNK IRDDGARSMA EALAANRTLS bmy_02774T0/1-1088 NSIGPQGAKA LADALKINRT LASLSLQSNR IRDDGARSMA EALAANRTLS BACU020518/1-1084 NSIGPQGAKA LADALKINRT LASLSLQSNR IRDDGARSMA EALAANRTLS 801 850 ENSP00000414415/1-1111 MLHLQKNSIG PMGAQRMAD- LKQNRSLKEL MFSSNSIGDG GAKALAEALK ENSBTAP00000005918/1-1065 VLHLQKNSIG PVGTQQMADA LKQNRSLKEL MFSSNSIGDG GAKALAEALM ENSTTRP00000016103/1-1107 VLHLQKNSIG PAGTQQMADA LKQNRSLKEL MFSSNSIGDG GAKALAETLK bmy_02774T0/1-1088 VLHLQKNSIG PVGTQQMADA LKQNRSLKEL MFSSNSIGDG GAKALAEALK BACU020518/1-1084 VLHLQKNSIG PVGTQQMADA LKQNRSLKEL MFSSNSIGDG GAKALAEALK 851 900 ENSP00000414415/1-1111 VNQGLESLDL QSNSISDAGV AALMGALCTN QTLLSLSLRE NSISPEGAQA ENSBTAP00000005918/1-1065 VNQGLKSLDL QSNSISDPGV AALMGALCTN QTLLSLNLRE NSISPEGAQD ENSTTRP00000016103/1-1107 VNQGLKSLDL QSNSISDLGV AALMEALCTN QMLLSLNLRE NSISPEGAQD bmy_02774T0/1-1088 VNQGLKSLDL QSNSISDLGV AALMEALCAN QTLLSLNLRE NSISPEGAQD BACU020518/1-1084 VNQGLKSLDL QSNSISDLGV AALMEALCTN QTLLSLNLRE NSISPEGAQD 901 950 ENSP00000414415/1-1111 IAHALCANST LKNLDLTANL LHDQGARAIA VAVRENRTLT SLHLQWNFIQ ENSBTAP00000005918/1-1065 LARALRTNST LKSLDLTANL LHDQGAQAVA EAVRENRTLT SLHLQWNFIQ ENSTTRP00000016103/1-1107 LARALRTNST LKSLDLTANL LHDQGAQAIA VAVRENCALT SLHLQWN-LQ bmy_02774T0/1-1088 LARALRTNST LKSLDLTANL LHDQGAQAIA AAVRENRALT SLHLQWNFIQ BACU020518/1-1084 LARALRTNST LKSLDLTANL LHDQGAQAIA AALRENRALT SLHLQWNFIQ 951 1000 ENSP00000414415/1-1111 AGAAQALGQA LQLNRSLTSL DLQENAIGDD --GACAVARA LKVNTALTAL ENSBTAP00000005918/1-1065 AGAAKALGQA LQLNTSLTSL DLQENAIGDE --GASAVASA LKVNTVLTAL ENSTTRP00000016103/1-1107 AGAAKALGQA LQLNTSLTSL DLQENAIGDE --GASAVASA LKANTALTAL bmy_02774T0/1-1088 AGAAKALGQA LQLNTSLTSL ERSMLSMSCH SVGPCSVHPE FRLYVQFTGK BACU020518/1-1084 AGAAKALGQA LQLNTSLTSL DLQENAIGDE --GASAVASA LKANTALTAL 1001 1050 ENSP00000414415/1-1111 YLQ------- ---------- ----VASIGA SGAQVLGEAL AVNRTLEILD ENSBTAP00000005918/1-1065 YLQ------- ---------- ----VASIGA PGAQALGEAL AVNRTLEILD ENSTTRP00000016103/1-1107 YLQ------- ---------- ----VASIAA PGAQALGEAL AVNRTLEILD bmy_02774T0/1-1088 CHRGRRRFCS GQCAKGEHSP HCSLVASIGA PGAQALGEAL AVNRTLEILD BACU020518/1-1084 YLQ------- ---------- ----VASIGA PGAQALGEAL AVNRTLEILD 1051 1100 ENSP00000414415/1-1111 LRGNAIGVAG AKALANALKV NSSLRRLNLQ ENSLGMDGAI CIATALSGNH ENSBTAP00000005918/1-1065 LRGNTIEVAG AKALASALKV NSSLQRLNLQ ENSLGMEGAI CVATALSGNH ENSTTRP00000016103/1-1107 LRGNAIGVAG AKALANALRV NSSLRRLNLQ ENSLGMDGAI CVATALSGNH bmy_02774T0/1-1088 LRGNAIGVAG AKALANALKV NSSLRRLNLQ ENSLGMDGAI CVATALCGNH BACU020518/1-1084 LRGNAIGVAG AKALANALKV NSSLRRLNLQ ENSLGMDGAI CVATALSGNH 1101 1150 ENSP00000414415/1-1111 RLQHINLQGN HIGDSGARMI SEAIKTNAPT CTVEM ENSBTAP00000005918/1-1065 GLRHINLQGN HIGESGARMI SEAIKTNAPS CTVEM ENSTTRP00000016103/1-1107 GLRHINLQGN HIGESGARMI SEAIKTNASS CTVEM bmy_02774T0/1-1088 GLQHINLQGN HIGESGARMI SEAIKTNASS CTVEM BACU020518/1-1084 GLQHINLQGN HIGEPGARMI SEAIKTNASS CTVEM