KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:53 2014 Check: 00 .. Name: ENSTTRP00000014927/1-872 Len: 925 Check: 9897 Weight: 1.00 Name: ENSP00000360916/1-878 Len: 925 Check: 6932 Weight: 1.00 Name: ENSBTAP00000005932/1-719 Len: 925 Check: 2326 Weight: 1.00 Name: BACU016165/1-717 Len: 925 Check: 3046 Weight: 1.00 Name: bmy_20022T0/1-780 Len: 925 Check: 222 Weight: 1.00 // 1 50 ENSTTRP00000014927/1-872 MEQWRQCGRW LIDCKVLPPN HRVVWPSAVV FDLAQALRDG VLLCQLLHNL ENSP00000360916/1-878 MEQWRQCGRW LIDCKVLPPN HRVVWPSAVV FDLAQALRDG VLLCQLLHNL ENSBTAP00000005932/1-719 ---------- ---------- ---------- ---------- ---------- BACU016165/1-717 ---------- ---------- ---------- ---------- ---------- bmy_20022T0/1-780 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000014927/1-872 SPGSIDLKDV NFRPQMSQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000360916/1-878 SPGSIDLKDI NFRPQMSQFL CLKNIRTFLK VCHDKFGLRN SELFDPFDLF ENSBTAP00000005932/1-719 ---------- ---------- ---------- ---------- ---------- BACU016165/1-717 ---------- ---------- ---------- ---------- ---------- bmy_20022T0/1-780 ---------- ---------- ---------- ---------- -------MVG 101 150 ENSTTRP00000014927/1-872 XXXXXXXVIS AVSRLSLHNL AQTKGIRPFP SEETAENDDD VYRSLEELAD ENSP00000360916/1-878 DVRDFGKVIS AVSRLSLHSI AQNKGIRPFP SEETTENDDD VYRSLEELAD ENSBTAP00000005932/1-719 ---------- ---------- ---------- ---------- ---------- BACU016165/1-717 ---------- ---------- ---------- ---------- ---------- bmy_20022T0/1-780 PSRRAAGRAQ GTPRLPGLSY QKPREAGALS LDQDTEAERE GLAVAPTASA 151 200 ENSTTRP00000014927/1-872 --------EH DVGEDIYDCV PCEDEGDDIY EDIIKVEVQQ PMVSP--KMG ENSP00000360916/1-878 --------EH DLGEDIYDCV PCEDGGDDIY EDIIKVEVQQ PMIRYMQKMG ENSBTAP00000005932/1-719 --------EH GVGEDIYDCV PCEDDGDDIY EDIIKVEVQQ PM-----KMG BACU016165/1-717 ---------- ---------- ---------- ---------- -M-----KMG bmy_20022T0/1-780 LRGAPSWTEH DVGEDIYDCV PCEDEGDDIY EDIIKVEVQQ PM-----KMG 201 250 ENSTTRP00000014927/1-872 MTEDDKRSCC LLEIQETEAK YYRTLEDIEK NYVTPLRLVL SPADMAAIFI ENSP00000360916/1-878 MTEDDKRNCC LLEIQETEAK YYRTLEDIEK NYMSPLRLVL SPADMAAVFI ENSBTAP00000005932/1-719 MTEDDKRNCC LLEIQETEAK YYRTLEDIEK NYVTPLRLVL SPVDMAAIFI BACU016165/1-717 MTEDDKRNCC LLEIQETEAK YYRTLEDIEK NYMTPLRLVL SPADMAAIFI bmy_20022T0/1-780 MTEDDKRNCC LLEIQETEAK YYRTLEDIEK NYMTSLRLVL SPADVAAIFI 251 300 ENSTTRP00000014927/1-872 NLEDLIKVHH SFLRAIDVSM MAGGSSLAKV FLDFKERLLI YGEYCSRMEH ENSP00000360916/1-878 NLEDLIKVHH SFLRAIDVSV MVGGSTLAKV FLDFKERLLI YGEYCSHMEH ENSBTAP00000005932/1-719 NLEDLIKVHH SFLRAIDVSM MAGGSSLAKV FLDFKERLLI YGEYCSHMEH BACU016165/1-717 NLEDLIKVHH SFLRAIDVSM MAGGSTLAKV FLDFKERLLI YGEYCSRMEH bmy_20022T0/1-780 NLEDLIKVHH SFLRAIDVSM MAGGSTLAKV FLDFKERLLI YGEYCSRMEH 301 350 ENSTTRP00000014927/1-872 AQTTLSQLLA GREDFRQKVE ECTLKVQDGK FKLQDLLVVP MQRVLKYHLL ENSP00000360916/1-878 AQNTLNQLLA SREDFRQKVE ECTLKVQDGK FKLQDLLVVP MQRVLKYHLL ENSBTAP00000005932/1-719 AQNTLNQLLA SREDFRQKVE ECTLKVQDGK FKLQDLLVVP MQRVLKYHLL BACU016165/1-717 AQNTLNQLLA SREDFRQKVE ECTLKVQDGK FKLQDLLVVP MQRVLKYHLL bmy_20022T0/1-780 AQNTLNQLLA SREDFRQKVE ECTLKVQDGK FKLQDLLVVP MQRVLKYHLL 351 400 ENSTTRP00000014927/1-872 LKELLSHSTD RPERQQLKEA LEAMQDLAMY INEVKRDKET LKKIGEFQSS ENSP00000360916/1-878 LKELLSHSAE RPERQQLKEA LEAMQDLAMY INEVKRDKET LRKISEFQSS ENSBTAP00000005932/1-719 LKELLSHSTD RPERQQLKEA LEAMQDLAMY INEVKRDKET LKKISEFQSS BACU016165/1-717 LKELLSHSTD RPERQQLKEA LEAMQDLAMY INEVKRDKET LKKISEFQSS bmy_20022T0/1-780 LKELLSHSTD RPERQQLKEA LEAMQDLAMY INEVKRDKET LKKISEFQSS 401 450 ENSTTRP00000014927/1-872 IENLQVKLEE FGRPKIDGEL KVRSIVNHTK QDRYLFLFDK AVIVCKRRGD ENSP00000360916/1-878 IENLQVKLEE FGRPKIDGEL KVRSIVNHTK QDRYLFLFDK VVIVCKRKGY ENSBTAP00000005932/1-719 IENLQVKLEE FGRPKIDGEL KVRSIVNHTK QDRYLFLFDK VVIVCKRRGY BACU016165/1-717 IENLQVKLEE FGRPKIDGEL KVRSIVNHTK QDRYLFLFDK VVIVCKRRGY bmy_20022T0/1-780 IENLQVKLEE FGRPKIDGEL KVRSIVNHTK QDRYLFLFDK VVIVCKRRGY 451 500 ENSTTRP00000014927/1-872 SYELKEIIEL LFHKMTDDPM NNKDVKKSHA --WSYGFYLI HLQGKQGFQF ENSP00000360916/1-878 SYELKEIIEL LFHKMTDDPM NNKDVKKSHG KMWSYGFYLI HLQGKQGFQF ENSBTAP00000005932/1-719 SYELKEIIEL LFHKMTDDPM NNKDVKK--- --WSYGFYLI HLQGKQGFQF BACU016165/1-717 SYELKEIIEL LFHKMTDDPM NNKDVKK--- --WSYGFYLI HLQGKQGFQF bmy_20022T0/1-780 SYELKEIIEL LFHKMTDDPM NNKDVKK--- --WSYGFYLI HLQGKQGFQF 501 550 ENSTTRP00000014927/1-872 FCKTEDMKRK WTEQFEMAMS NIKPDKATAN QHSFQMYTFD KTTNCRACRM ENSP00000360916/1-878 FCKTEDMKRK WMEQFEMAMS NIKPDKANAN HHSFQMYTFD KTTNCKACKM ENSBTAP00000005932/1-719 FCKTEDMKRK WMEQFEMAMS NIKPDKANAN HHSFQMYTFD KTTNCKACRM BACU016165/1-717 FCKTEDMKRK WMEQFEMAMS NIKPDKANAN HHSFQMYTFD KTTNCKACRM bmy_20022T0/1-780 FCKTEDMKRK WMEQFEMAMS NIKPDKANAN HHSFQMYTFD KTTNCKACRM 551 600 ENSTTRP00000014927/1-872 FLXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXV-GGRDT SGVGPGPKMV ENSP00000360916/1-878 FLRGTFYQGY MCTKCGVGAH KECLEVIPPC KFTSPADLDA SGAGPGPKMV ENSBTAP00000005932/1-719 FLRGTFYQGY LCTKCGVGAH KECLEVTPPC KISSPADPDA SGAGPGPKMV BACU016165/1-717 FLRGTFYQGY LCTKCGVGAH KECLEVTPPC KISSPADLDT SGAGPGPKMV bmy_20022T0/1-780 FLRGTFYQGY LCTKCGVGAH KECLEVTPPC KISSPADLDT SGAGPGPKMV 601 650 ENSTTRP00000014927/1-872 AVQNYHGNPA PPGKPVLTFQ TGDVIELLRG DPESQWWEGR LVQTRKSGYF ENSP00000360916/1-878 AMQNYHGNPA PPGKPVLTFQ TGDVLELLRG DPESPWWEGR LVQTRKSGYF ENSBTAP00000005932/1-719 AVQNYHGNPA PPTKPALTFQ TGDVIELLRG DPESQWWEGR LVQTRKSGYF BACU016165/1-717 AVQNYHGNPA PPGKPVLTFQ TGDVIELLRG DPESQWWEGR LVQTRKSGYF bmy_20022T0/1-780 AVQNYHGNPA PPGKPVLTFQ TGDVIELLRG DPESQWWEGR LVQTRKSGYF 651 700 ENSTTRP00000014927/1-872 PSSSVKPCPV DGRPPISRPP SRDMDYTAYP WFAGNMERQQ TDNLLKSHAS ENSP00000360916/1-878 PSSSVKPCPV DGRPPISRPP SREIDYTAYP WFAGNMERQQ TDNLLKSHAS ENSBTAP00000005932/1-719 PSSSVKPCPV DGRPPISRPL SREMDYTAYP WFAGNMERQQ TDNLLKPHAS BACU016165/1-717 PSSSVKPCPV DGRPPISRPP SRDMDYAAYP WFAGNMERQQ TDNLLKSHAS bmy_20022T0/1-780 PSSSVKPCPV DGRPPISRPP SRDMDYTAYP WFAGNMERQQ TDNLLKSHAS 701 750 ENSTTRP00000014927/1-872 GTYLIRERPA EAER-AISIK FNDEVKHIKV VEKDSWVHIT EAKKFESLSE ENSP00000360916/1-878 GTYLIRERPA EAERFAISIK FNDEVKHIKV VEKDNWIHIT EAKKFDSLLE ENSBTAP00000005932/1-719 GTYLIRERPA EAERFAISIK FNDEVKHIKV VEKDSWVHIT EAKKFESLLE BACU016165/1-717 GTYLIRERPA EAERFAISIK FNDEVKHIKV VEKDSWVHIT EAKKFESLLE bmy_20022T0/1-780 GTYLIRERPA EAERFAISIK FNDEVKHIKV VEKDSWVHIT EAKKFESLLE 751 800 ENSTTRP00000014927/1-872 LVEYYQCHSL KESFKQLDTT LKYPYKSRER VASRASSRSP ASCASYNFSF ENSP00000360916/1-878 LVEYYQCHSL KESFKQLDTT LKYPYKSRER SASRASSRSP ASCASYNFSF ENSBTAP00000005932/1-719 LVEYYQYHSL KESFKQLDTT LKYPYKAWER TASRASSRSP ASCASYNFSF BACU016165/1-717 LVEYYQCHSL KESFKQLDTT LKYPYKSRER VASRASSRSP ASCASYSFSF bmy_20022T0/1-780 LVEYYQCHSL KESFKQLDTT LKYPYKSRER VASRASSRSP ASCASYNFSF 801 850 ENSTTRP00000014927/1-872 LSPQGFSLAS QGSSVPFWP- VFTPRXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000360916/1-878 LSPQGLSFAS QGPSAPFWS- VFTPRVIGTA VARYNFAARD MRELSLREGD ENSBTAP00000005932/1-719 LSPQGLGLAS QGSSTPFWSA VFTPRVIGTA VARYNFAARD LRELSLREGD BACU016165/1-717 LSP------- QGSSAPFWSA VFTPRVIGTA VARYNFAARD LRELSLREGD bmy_20022T0/1-780 LSPQGFSLAS QGSSAPFWSA VFTPRVIGTA VARYNFAARD LRELSLREGD 851 900 ENSTTRP00000014927/1-872 XXXXXXXXXX XXXXXXXXXX XXI------G WF-------- ---------- ENSP00000360916/1-878 VVRIYSRIGG DQGWWKGETN GRI------G WF-------- ---------- ENSBTAP00000005932/1-719 VVKIYSRIGG DQGWWKGETS GRV------G WF-------- ---------- BACU016165/1-717 VVKIYSRIGG DQGWWKGETN GRVSGTGPGS WAPRGLHLPE VLGKVGLWQA bmy_20022T0/1-780 VVKIYSRIGG DQGWWKGETN GRI------G WF-------- ---------- 901 950 ENSTTRP00000014927/1-872 ---------- -PSTYVEEEG IQ--- ENSP00000360916/1-878 ---------- -PSTYVEEEG IQ--- ENSBTAP00000005932/1-719 ---------- -PSTYVEEEG VQ--- BACU016165/1-717 ATTAPPCPDS VPSDCAQEVG CPQAP bmy_20022T0/1-780 ---------- -PSTYVEEEG IQ---