KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:54 2014 Check: 00 .. Name: ENSTTRP00000005488/1-619 Len: 871 Check: 6186 Weight: 1.00 Name: bmy_00471T0/1-343 Len: 871 Check: 1923 Weight: 1.00 Name: ENSP00000251808/1-625 Len: 871 Check: 3730 Weight: 1.00 Name: BACU004822/1-741 Len: 871 Check: 9668 Weight: 1.00 Name: ENSBTAP00000005935/1-630 Len: 871 Check: 6827 Weight: 1.00 // 1 50 ENSTTRP00000005488/1-619 ---------- -SNKRLVALV PMPSDPPFNT RRAYTSEDEA WKSYLENPLT bmy_00471T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000251808/1-625 MSQESD---- -NNKRLVALV PMPSDPPFNT RRAYTSEDEA WKSYLENPLT BACU004822/1-741 ---------- ---------- -MPSDPPFNT RRAYTSEDEA WKSYLENPLT ENSBTAP00000005935/1-630 SDQESNFSCF RSNKRLVALV PMPSEPPFNT RRAYTSEDEA WKSYLENPLT 51 100 ENSTTRP00000005488/1-619 AATKAMMSIN GDEDSAAALG LLYDYYKVPR DKRLLSVSKA SDSQEDQDKX bmy_00471T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000251808/1-625 AATKAMMSIN GDEDSAAALG LLYDYYKVPR DKRLLSVSKA SDSQEDQEKR BACU004822/1-741 AATKAMMSIN GDEDSAAALG LLYDYYKVPR DKRLLSVSKA SDSQEDQDKR ENSBTAP00000005935/1-630 AATKAMMSIN GDEDSAAALG LLYDYYKVPR DKRLLSVSKA SDSQEDQDKR 101 150 ENSTTRP00000005488/1-619 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXTNVSE bmy_00471T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000251808/1-625 NCLGTSEAQS NLSGGENRVQ VLKTVPVNLS LNQDHLENSK REQYSISFPE BACU004822/1-741 NCLGTSGAQS SLSGGENRVQ VLKTVPVNLS LNQDHLENSK REQYSTNVSE ENSBTAP00000005935/1-630 NCLGTSEAQS NLSGGENRVQ VLKTVPVNLS LNQDHLEHSK REQYSTNVPE 151 200 ENSTTRP00000005488/1-619 SPAVIPMAGI TVVKAEDFTP VFTAPPVHYP RGDGEEQRVV IFEQTQYGVP bmy_00471T0/1-343 ---------- ---------- ---------- -MEGQE---- ---------- ENSP00000251808/1-625 SSAIIPVSGI TVVKAEDFTP VFMAPPVHYP RGDGEEQRVV IFEQTQYDVP BACU004822/1-741 SPAVVPMAGI TVVKAEDFTP VFTAPPVHYP RGDGEEQRVV IFEQTQYGVP ENSBTAP00000005935/1-630 SPAIIPVSGI TVVKAEDFTP VFMSPPVHYP RGEGEEQRVV IFEQTQYGVP 201 250 ENSTTRP00000005488/1-619 SVASHSTYLK DDQRSTPDST YSESFKDGNT EKFRSASVGA EEYMYDQTSS bmy_00471T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000251808/1-625 SLATHSAYLK DDQRSTPDST YSESFKDAAT EKFRSASVGA EEYMYDQTSS BACU004822/1-741 SVASHSAYLK DDQRSTPDST YSESFKDGNT EKFRSASVGA EEYMYDQTSS ENSBTAP00000005935/1-630 SMAGHSTYLK DDQRSTPDST YSESFKDGNT EKFRSASVGA EEYMYDQTSS 251 300 ENSTTRP00000005488/1-619 GTFQYTLEAT KSLRQKQGEG PMTYLNKGQF YAITLSETGD NKCFRHPISK bmy_00471T0/1-343 ---------- ---------- -------GKR HKVTVN---- ---------- ENSP00000251808/1-625 GTFQYTLEAT KSLRQKQGEG PMTYLNKGQF YAITLSETGD NKCFRHPISK BACU004822/1-741 GTFQYTLEAT KSLRQKQGEG PMTYLNKGQF YAITLSETGD NKCFRHPISK ENSBTAP00000005935/1-630 GTFQYTLEAT KSLRQKQGEG PMTYLNKGQF YAITLSETGD NKCFRHPISK 301 350 ENSTTRP00000005488/1-619 VRSVVMVVFS EDKNRDEQLK YWKYWHSRQH TAKQRVLDI- ---------- bmy_00471T0/1-343 ---------- ---------- ----WLSQM- ---------- ---------- ENSP00000251808/1-625 VRSVVMVVFS EDKNRDEQLK YWKYWHSRQH TAKQRVLDI- ---------- BACU004822/1-741 VRSVVMVVFS EDKNRDEQLK YWKYWHSRQH TAKQRVLDIV GKVWDFPPFK ENSBTAP00000005935/1-630 VRSVVMVVFS EDKNRDEQLK YWKYWHSRQH TAKQRVLDI- ---------- 351 400 ENSTTRP00000005488/1-619 ---------- ---------- ---------A DYKESFNTIG NIEEIAYNAV bmy_00471T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000251808/1-625 ---------- ---------- ---------A DYKESFNTIG NIEEIAYNAV BACU004822/1-741 ITQERTGWGM GQALPDTLLA WRRALAVATA DYKESFNTIG NIEEIAYNAV ENSBTAP00000005935/1-630 ---------- ---------- ---------A DYKESFNTIG NIEEIAYNAV 401 450 ENSTTRP00000005488/1-619 SFTWDVNEEA K--------- ---------- ---------- ---------- bmy_00471T0/1-343 ----DLAREA N--------- ---------- ---------- ---------- ENSP00000251808/1-625 SFTWDVNEEA K--------- ---------- ---------- ---------- BACU004822/1-741 SFTWDVNEEA KVRLTFLVEI SSLHNDARSR KSLRQDIRFP SGSVQSGSSC ENSBTAP00000005935/1-630 SFTWDVNEEA K--------- ---------- ---------- ---------- 451 500 ENSTTRP00000005488/1-619 ---------- ---------- ---------- ---------- ---------- bmy_00471T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000251808/1-625 ---------- ---------- ---------- ---------- ---------- BACU004822/1-741 NVNRGPWAPG NDSGGIQAGE VLSIHAGGSL EVDEVGAQRD RENKALEWGS ENSBTAP00000005935/1-630 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000005488/1-619 ---IFITVNC LSTDFSSQKG VKGLPLMIQI DTYSYNNRSN KPIHRAYCQI bmy_00471T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000251808/1-625 ---IFITVNC LSTDFSSQKG VKGLPLMIQI DTYSYNNRSN KPIHRAYCQI BACU004822/1-741 GTQIFITVNC LSTDFSSQKG VKGLPLMIQI DTYSYNNRSN KPIHRAYCQI ENSBTAP00000005935/1-630 ---IFITVNC LSTDFSSQKG VKGLPLMIQI DTYSYNNRSN KPIHRAYCQI 551 600 ENSTTRP00000005488/1-619 KVFCDKGAER KIRDEERKQN RKKGKGQASQ TQCNNSSDGK LAAIPLQKKS bmy_00471T0/1-343 ----EKGAER KIRDEERKQN RKKGKGQTSQ TQCNNSSDGK LAAIPLQKKS ENSP00000251808/1-625 KVFCDKGAER KIRDEERKQN RKKGKGQASQ TQCNSSSDGK LAAIPLQKKS BACU004822/1-741 KVFCDKGAER KIRDEERKQN RKKGKGQTSQ TQCNNSSDGK LAAIPLQKKS ENSBTAP00000005935/1-630 KVFCDKGAER KIRDEERKQN RKKGKGQASQ TQCNNSSDGK LAAIPLQKKS 601 650 ENSTTRP00000005488/1-619 DITYFKTMPD LHSQPVLFIP DVHFANLQRT GQXXXXXXXX XXXSSVLVKR bmy_00471T0/1-343 DITYFKTMPD LHSQPVLFIP DVHFANLQRT GQVYYNTDDE REGSSVLVKR ENSP00000251808/1-625 DITYFKTMPD LHSQPVLFIP DVHFANLQRT GQVYYNTDDE REGGSVLVKR BACU004822/1-741 DITYFKTMPD LHSQPVLFIP DVHFANLQRT GQVYYNTDDE REGSSVLVKR ENSBTAP00000005935/1-630 DVTYFKTMPD LHSQPVLFIP DVHFANLQRT GQVYYNTDDE REGSSVLVKR 651 700 ENSTTRP00000005488/1-619 MFRPMEEEFG PAPSKQMKEE GMKR------ ---------- ---------- bmy_00471T0/1-343 MFRPMEEEFG PAPSKQMKEE GMKRVRDLIP LHQESQKRST GLSVSCSASR ENSP00000251808/1-625 MFRPMEEEFG PVPSKQMKEE GTKR------ ---------- ---------- BACU004822/1-741 MFRPMEEEFG PAPSKQMKEE GMKR------ ---------- ---------- ENSBTAP00000005935/1-630 MFRPMEEEFG PAPSKQMKEE GMKR------ ---------- ---------- 701 750 ENSTTRP00000005488/1-619 ---------- ---------- ---------- ---------- ---------- bmy_00471T0/1-343 CCADSLSLLG VKGKAGWWLF SPHPAVANTR SFQRPSAYST GLLMSQVTEE ENSP00000251808/1-625 ---------- ---------- ---------- ---------- ---------- BACU004822/1-741 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005935/1-630 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000005488/1-619 ---------- ---------- ---------- ---VLLYVRK ETDDVFDALM bmy_00471T0/1-343 VTECSSVTAT GGKQPPGAAS WTPQSRLPAP SLSVLLYVRK ETDDVFDALM ENSP00000251808/1-625 ---------- ---------- ---------- ---VLLYVRK ETDDVFDALM BACU004822/1-741 ---------- ---------- ---------- ---VLLYVRK ETDDVFDALM ENSBTAP00000005935/1-630 ---------- ---------- ---------- ---VLLYVRK ETDDVFDALM 801 850 ENSTTRP00000005488/1-619 LKSPTVRGLM EAISEKYGLP VEKITKLYKK SKKGILVNMD DNIIEHYSNE bmy_00471T0/1-343 LKSPTVRGLM EAISEKYGLP VEKITKLYKK SKKGILVNMD DNIIEHYSNE ENSP00000251808/1-625 LKSPTVKGLM EAISEKYGLP VEKIAKLYKK SKKGILVNMD DNIIEHYSNE BACU004822/1-741 LKSPTVRGLM EAISEKYGLP VEKITKLYKK SKKGILVNMD DNIIEHYSNE ENSBTAP00000005935/1-630 LKSPTVKGLM EAISEKYGLP VEKIAKLYKK SKKGILVNMD DNIIEHYSNE 851 900 ENSTTRP00000005488/1-619 DTFILNMEST MEGFKITLME I bmy_00471T0/1-343 DTFILNMESV LEGFKITLME I ENSP00000251808/1-625 DTFILNMESM VEGFKVTLME I BACU004822/1-741 DTFILNMESV LEGFKVTLME I ENSBTAP00000005935/1-630 DTFILNMESM VEGFKITLME I