KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:56 2014 Check: 00 .. Name: ENSP00000040877/1-1621 Len: 1636 Check: 220 Weight: 1.00 Name: ENSBTAP00000005936/1-1313 Len: 1636 Check: 1359 Weight: 1.00 Name: bmy_09321T0/1-1205 Len: 1636 Check: 8425 Weight: 1.00 Name: ENSTTRP00000008263/1-1542 Len: 1636 Check: 704 Weight: 1.00 Name: BACU004999/1-1279 Len: 1636 Check: 7178 Weight: 1.00 // 1 50 ENSP00000040877/1-1621 MEWVLAEALL SQSRDPRALL GALCQGEASA ERVETLRFLL QRLEDEEARG ENSBTAP00000005936/1-1313 ---------- ---------- ---------- ---------- ---------- bmy_09321T0/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008263/1-1542 MEWVLADTLL SQSRDPRVLL GALCCEEASA ERVETLRFLL QRLEDEEARG BACU004999/1-1279 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000040877/1-1621 SGGAGALPEA AREVAAGYLV PLLRSLRGRP AGGPDPSLQP RHRRRVLRAA ENSBTAP00000005936/1-1313 ---------- ---------- ---------- ---------- ---------- bmy_09321T0/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008263/1-1542 -GGAGALPEA AREVAAGYLV PLLRGLRGRP VGGADTGPAA RQRRRVLRAA BACU004999/1-1279 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000040877/1-1621 GAALRSCVRL AGRPQLAAAL AEEALRDLLA GWRAPG---- AEAAVEVLAA ENSBTAP00000005936/1-1313 ---------- ---------- ---------- ---------- ---------- bmy_09321T0/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008263/1-1542 GAALRSCARL AGGPQLAAAL AEEALRDLLA AGPAPGLDGA AEAAVEVLAA BACU004999/1-1279 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000040877/1-1621 VGPCLRPRED GPLLERVAGT AVALALGGGG DGDEAGPAED AAALVAGRLL ENSBTAP00000005936/1-1313 ---------- ---------- ---------- ---------- ---------- bmy_09321T0/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008263/1-1542 VGPCLRPRED APLLERMARA ALXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU004999/1-1279 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000040877/1-1621 PVLVQCGGAA LRAVWGGLAA PGASLGSGRV EEKLLVLSAL AEKLLPEPGG ENSBTAP00000005936/1-1313 ---------- ---------- ---------- ---------- ---------- bmy_09321T0/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008263/1-1542 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLNAL AEKLLPEPGA BACU004999/1-1279 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000040877/1-1621 DRARGAREAG PDARRCWRFW RTVQAGLGQA -DALTRKRAR YLLQRAVEVS ENSBTAP00000005936/1-1313 ---------- ---------- ---------- ---------- ---------- bmy_09321T0/1-1205 ---------- PDARRCWRFW RTVQAGLTRA EDALTRKRAR YLLQRAVEVS ENSTTRP00000008263/1-1542 ERASAAREAD PDARRCWRFW RTVQAGLTRA EDALTRKRAR YLLQRAVEVS BACU004999/1-1279 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000040877/1-1621 AELGADCTCG PQEGNGPSLF WWSERKKDEL LKFWENYILI METLEGNQIH ENSBTAP00000005936/1-1313 ---------- ----SGPSLF WWSEKKKDEL LKFWENYILI METLEGNQIH bmy_09321T0/1-1205 AELGADCACA PQEGTGPSLF WWSEKKKDEL LKFWENYILI METLEGNQIH ENSTTRP00000008263/1-1542 AELGTDCACA PQEGTGPSLF WWSEKKKDEL LKFWENYILI METLEGNQIH BACU004999/1-1279 ---------- ---------- ---------- ---------- METLEGNQIH 351 400 ENSP00000040877/1-1621 VIKPVLPKLN NLFEYAVSEE NGCWLFHPSW HMCIYKRMFE SENKILSKEG ENSBTAP00000005936/1-1313 VIKPVLPKLN GLFEYAVSEE NGCWLFHPSW HLCIYKRMFE SENKILTKEG bmy_09321T0/1-1205 VIKPVLPKLN NLFEYAVSEE NGCWLFHPSW HLCIYKRMFE SENKILTKEG ENSTTRP00000008263/1-1542 VIKPVLPKLN NLFEYAVSEE NXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU004999/1-1279 VIKPVLPKLN NLFEYAVSEE NGCWLFHPSW HLCIYKRMFE SENKILTKEG 401 450 ENSP00000040877/1-1621 VIHFLELYET KILPFSPEFS EFIIGPLMDA LSESSLYSRS PGQPIGSCSP ENSBTAP00000005936/1-1313 VTHFLELYET RILPFSPEIS EFIIGPLMDA LSESSLYSRS PGQLIGSVSP bmy_09321T0/1-1205 VTHFLELYET RVLPFSAEFS EV-------- ---------- -NTDVGIVIY ENSTTRP00000008263/1-1542 XXXXXXXXXX XXXXXXXXXX XFIIGALMDA LSQSSLYSRS PGQLIGSGSP BACU004999/1-1279 VTHFLELYET RVLPFSAEFS EFIIGPLMDA LSESSLYSRS PGQLIGSGSP 451 500 ENSP00000040877/1-1621 LGLKLQKFLV TYISLLPEEI KSSFLLKFIR KMTSRHWCAV PILFLSKALA ENSBTAP00000005936/1-1313 LGLKLQKFLV TYISFLPEEI KSSFLLKFIQ KMTSRHWCAV PILFLSKALA bmy_09321T0/1-1205 LSFRV----- -YYWAINGCT FRELSIQQVP RPADRKWFSI GIE-ITEVLS ENSTTRP00000008263/1-1542 LGLKLQKFLV TYISLLPEE- KSSFLLKFIQ KMTSRHWCAI PILFLSKALA BACU004999/1-1279 LGLKLQKFLV TYISLLPEEI KSSFLLKFIQ KMTSRHWCAI PILFLCKALA 501 550 ENSP00000040877/1-1621 NVPRHKALGI DGLLAL--RD VIHCTMITHQ ILLRGAAQCY LLQTAMNLLD ENSBTAP00000005936/1-1313 NVPRCKALGM EGLLALSIRD VLQCTMITHQ ILLRGAAQCY LLQTAMNLVD bmy_09321T0/1-1205 HLHFSSSRRN K-------ED VLQCTMITHQ ILLRGAAQCY LLQTAMNLVD ENSTTRP00000008263/1-1542 NIPRCKALGI EGLLAL--RD VLQCTMITHQ ILLRGAAQCY LLQTAMNLVD BACU004999/1-1279 NIPRCKALGI EGLLAL--RD VLQCTMITHQ ILLRGAAQCY LLQAAMNLVD 551 600 ENSP00000040877/1-1621 VEKVSLSDVS TFLMSLRQEE SLGRGTSLWT ELCDWLRVNE SYFKPSPTCS ENSBTAP00000005936/1-1313 VEKVSLSDIS TFLMSVRQEE SLGRGTSLWM ELCDWLRINE SYFKQSSSCS bmy_09321T0/1-1205 VEKVSLSDVS SLVMSVRQEE SFGRGTSLWT ELCDWLRVNE SCFRRPSTCS ENSTTRP00000008263/1-1542 VEKVSLSDVS SFVMSLRQEE SFGRGTSLWT ELCDWLRVNE SCFRRPLTCS BACU004999/1-1279 VEKVSLSDVS SLVMSVRQEE SFGRGTSLWT ELCDWLRVNE SCFRRPSTCS 601 650 ENSP00000040877/1-1621 SIGLHKT-SL NAYVKSIVQE YVKSSAWETG ENCFMPDWFE AKLVSLMVLL ENSBTAP00000005936/1-1313 STGLHETSSL NAYVRNLVQE YIRSSAWEGG ENSCMPDWFE AKLVALMVLL bmy_09321T0/1-1205 SIGLQETSSL NAYVKNLVQE YIKSPAWEGG ENCCMPDWLE AKLVAMMVLL ENSTTRP00000008263/1-1542 SIGLHETSSL NAYVKNLVQE YIKSPAWEGG EDCCMPDWLE AKLVAVMVLL BACU004999/1-1279 SIGLHETSSL NAYVKNLVQE YIKSPAWEGG ENCCMPDWLE AKLVAMMVLL 651 700 ENSP00000040877/1-1621 AVDVEGMKTQ YSGKQRTENV LRIFLDPLLD VLMKFSTNAY MPLLKTDRCL ENSBTAP00000005936/1-1313 AIDVERMKSQ YSEKRRTQNV LRIFLDPLLD ALVKFGTNAY MPLLKTDRCL bmy_09321T0/1-1205 AIDVEGMKSQ YSEKRRTQNV LRIFLDPLLD ALVKFGTNAY MPLLKTDRCL ENSTTRP00000008263/1-1542 AIDVEGMKSQ YSEKRRTQNV LRIFLDPLLD ALVKFGTNAY MPLLKTDRCL BACU004999/1-1279 AIDVEGMKSQ YSEKRRTQNV LRIFLDPLLD ALVKFGTNAY MPLLKTDRCL 701 750 ENSP00000040877/1-1621 QLLLKLLNTC RLKGSSAQD- ---DEVSTVL QNFFMSTTES ISEFILRRLT ENSBTAP00000005936/1-1313 QLLLKLLHTC LLKGSGTQD- ---DEVFTLL QNFIMSTTES ISEFILRRLT bmy_09321T0/1-1205 QLLLKLLHTC LLKGSSTQD- ---GEL--LL DCRVYFVPNK LISIIL---- ENSTTRP00000008263/1-1542 QLLLKLLHTC LLKGSGTQD- ---DEVFPLL QNFVMSTTES VSEFILRRLT BACU004999/1-1279 QLLLKLLHTC LLKGSSTQDV APTDEVCTLL QNFVLSTTES ISEFILRRLT 751 800 ENSP00000040877/1-1621 MNELNSVSDL DRCHLYLMVL TELINLHLKV GWKRGNPIWR VISLLKNASI ENSBTAP00000005936/1-1313 MNELSTVSDL DRCHLYLMVL TELINLHLNV GWKRGNPIWK VISPLKNASI bmy_09321T0/1-1205 VAPTDEVSDL DRCHLYLMVL TELINLHLKV GWKRGNPIWR VISPLKNASI ENSTTRP00000008263/1-1542 MKELSRVSDL ERCHLYLMVL TELINLHLKV GWKRGNPIWR VISPLKNASI BACU004999/1-1279 MKELSSVSDL DRCHLYLMVL TELINLHLKV GWKRGNPIWR VISPLKNASI 801 850 ENSP00000040877/1-1621 QHLQEM-DSG QEPTVGSQIQ RVVSMAALAM VCEAIDQKPE LQLDSLHAGP ENSBTAP00000005936/1-1313 RHLQEM-DRG QEPTLGRQIQ RAVSMAALAM VCE-VSQKPE LQLDSLDVGP bmy_09321T0/1-1205 RHLQEM-DRG QEPTLGRQIQ RVVSMAALAM VCEAIDQKPE LQLDSRDAGA ENSTTRP00000008263/1-1542 RHLQEMVXXX XEPTLGRQIQ RVVSMAALAM VCEAIDQKPE LQLDSRDAGA BACU004999/1-1279 RHLQEM-DRG QEPTLGRQIQ RVVSMAALAT VCEATDQKPE LQLDSRDAGT 851 900 ENSP00000040877/1-1621 LESFLSSLQL NQTLQKPHAE EQSSYAHPLE CSSVLEESSS SQGWGKIVAQ ENSBTAP00000005936/1-1313 PETFISSLQL NQTLQKPHTE EESRYVHHLD SSIFFEESSS SQGWGKIAAQ bmy_09321T0/1-1205 TERFLSSLQL NQTLQKPHTE EDSS------ ---FFEESPS SQGWGKIVAQ ENSTTRP00000008263/1-1542 TERFLSSLQL NQTLQKPHAE EDSRCVHPLE RSIFFEESSS SQGWGKIVAQ BACU004999/1-1279 TERFLSSLQL NQTLQKPHTE EDGS------ ---FFEESSS SQGWGKIVAQ 901 950 ENSP00000040877/1-1621 YIHDQWVCLS FLLKKYHTLI PTTGSEILEP FLPAVQMPIR TLQSALEALT ENSBTAP00000005936/1-1313 YIHDQWVCLS FLLRKCHTLI PASEGEILEP TLPAVPMAVR TLQSALEALT bmy_09321T0/1-1205 YIHDQWVCLS FLLKKYHTLI PASEDEILEP ILPAVQMPIR TLQSALEALT ENSTTRP00000008263/1-1542 YIHDQWVCLS FLLKKYHTLI PASEDEILEP ILPAVQMPIR TLQSALEALT BACU004999/1-1279 YIHDQWVCLS FLLKKYHTLI PASEDEILEP ILPAVQMPVR TLQSALEALT 951 1000 ENSP00000040877/1-1621 VLSSDQVLPV FHCLKVLVPK LLTSSESLCI ESFDMAWKII SSLSNTQLIF ENSBTAP00000005936/1-1313 VLPSEQVLPV FHCMKILVPK LLTTSESLCI ESFDMAWKII ASLSNTQLIF bmy_09321T0/1-1205 ILPSDQVLPV FHCMKILVPK ---------- ---------- ---------- ENSTTRP00000008263/1-1542 ILPSDQVLPV FHCMKILVPK LLTSSESLCI VSFDMAWKII ASLSNTQLIF BACU004999/1-1279 ILPSDQVLPV FHCMKILVPK LLTSSESLCI VSFDMAWKII ASLSNTQLIF 1001 1050 ENSP00000040877/1-1621 WANLKAFVQF VFDNKVLTIA AKIKGQAYFK IKEIMYKIIE MSAIKTGVFN ENSBTAP00000005936/1-1313 WSNFKAFVQF VFDPKVLTIA AKIKGQAYFK IKEVMYRIIE MSAIKTGVFN bmy_09321T0/1-1205 ---------- ---------- ---------- ---IMYRIIE MSTIKTGVFN ENSTTRP00000008263/1-1542 WSNLKAFVQF VFDPKVLTIA AKIKGQAYFK IKEIMYRIIE MSAIKTGVFN BACU004999/1-1279 WSNLKAFVQF VFDPKVLTIA AKIKGQAYFK IKEIMYRIIE MSTIKTGVFN 1051 1100 ENSP00000040877/1-1621 TLISYCCQSW IVSASNVSQG SLSSAKNYSE LILEACIFGT VFRRDQ--RL ENSBTAP00000005936/1-1313 ILISYCCRSW VVSASNV--- SLSIAKNYSE LVLEACIFGT VFRRDQRERL bmy_09321T0/1-1205 ILISYCCKSW IVSASNV--- SLSTAKNYSE LVYEACIFGT VFRRDQ--RL ENSTTRP00000008263/1-1542 ILISYCCKSW IVSASNV--- SLSTAKNYSE LVLEACIFGT VFRRDQ--RL BACU004999/1-1279 ILISHCCKSW IVSASNV--- PLSTAKNYSE LVYEACIFGT VFRRDQ--RL 1101 1150 ENSP00000040877/1-1621 VQDVQTFIEN LGHDCAANIV MENTKREDHY VRICAVKFLC LLDGSNMSHK ENSBTAP00000005936/1-1313 IQDVQTFIEN LGHECAANVV IENTKREDHY VRICAVKFLC LLDGSNMSHK bmy_09321T0/1-1205 IQDVQTFIEN LGHECAANMV IENTKREDHY VRICAVKFLC LLDGSNMSHK ENSTTRP00000008263/1-1542 IQDVQTFIEN LGHECAANTV IENTKREDHY VRICAVKFLC LLDDSNMSHK BACU004999/1-1279 IQDVQTFIEN LGHECAANMV IENTKREDHY VRICAVKFLC LLDGSNMSHK 1151 1200 ENSP00000040877/1-1621 LFIEDLAIKL LDKDELVSKS KKRYYVNSLQ HRVKNRVWQT LLVLFPRLDQ ENSBTAP00000005936/1-1313 LFMEDLAIKL LDKDELVSKS RTRYYVNSQQ HRVKNRIWQI LLVLFPKFDQ bmy_09321T0/1-1205 LFMEDLAIKL LEKDELVSKS RTRYYVNSQQ HRVKNRIWQT LLVLLPRFDQ ENSTTRP00000008263/1-1542 LFMEDLAIKL LEKDELVSKS RTRYYVNSQQ HRVKNRIWQT LLVLFPRFDQ BACU004999/1-1279 LFMEDLAIKL LEKDELVSKS RTRYYVNSQQ HRVKNRIWQT LLVLLPRFDQ 1201 1250 ENSP00000040877/1-1621 NFLNGIIDRI FQAGFTNNQA SIKYFIEWII ILILHKFPQF LPKFWDCFSY ENSBTAP00000005936/1-1313 NFLNKIIDKI FQAGFINNQA SIKYFIEWII ILILHKFPQF LPKFWNCFSY bmy_09321T0/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008263/1-1542 NFLNRITDKI FQAGFINNQA SIKYFIEWII ILILHKFPQF LPKFWDCFSY BACU004999/1-1279 NFLNRIIDRI FQAGFISNQA SIKYFIEWII ILILHKFPQF LPKFWDCFSY 1251 1300 ENSP00000040877/1-1621 GEENLKTSIC TFLAVLSHLD IITQNIPEKK LILKQALIVV LQWCFNHNFS ENSBTAP00000005936/1-1313 GEENLKTSIC TFLSVLSHLD VITETILEKK LILKQALTIV LQWCFNHNFS bmy_09321T0/1-1205 GEENLKTSIC TFLSALSHLD IITENIPEKK LILKQALIIV LHWCFNHNFS ENSTTRP00000008263/1-1542 AEENLKTSIC TFLSVLSHLD IITENIPEKK LILKQALIVV LHWCFNHNFS BACU004999/1-1279 GEENLKTSIC TFLSALSHLD IITENIPEKK LILKQALIIV LHWCFNHNFS 1301 1350 ENSP00000040877/1-1621 VRLYALVALK KLWTVCKVLS VEEFDALTPV IESSLHQVES MHGAGNAKKN ENSBTAP00000005936/1-1313 IRLYALVALK KIWSMCKGLH IEELAALTSV IESSLSQVEN MHGAGSAKKN bmy_09321T0/1-1205 IRLYALVALK KIWSMCKTLH IEELDALTSI IESSLNQVEN MHGAGNAKKN ENSTTRP00000008263/1-1542 IRLYALVALK KIWSMCKTLH VEELDALTSV IESSLNQVEN MHGAGNAKKN BACU004999/1-1279 IRLYALVTLK KIWSMCKTLH LEELDALTCI IESCLNQVEN TRGAGNAKKN 1351 1400 ENSP00000040877/1-1621 WQRIQEHFFF ATFHPLKDYC LETIFYILPR LSGLIEDEWI TIDKFTRFTD ENSBTAP00000005936/1-1313 WQRIQEHFFF TAFHPLKDYC LETIFYTLPR LSGLTEDEWI AIGKFTRFTD bmy_09321T0/1-1205 WQRIQEHFFF ATFHPLKDYC LETIFYILPR LSGLVEDEWI AIGKFTRFTD ENSTTRP00000008263/1-1542 WQRIQEHFFF AAFHPLKDYC LETIFYILPR LSGLVEDEWI AIGKFTRFTD BACU004999/1-1279 WQRIQEHFFF ATFHPLKDYC LETIFYILPR LSGLVEDEWI AIGKFTRFTD 1401 1450 ENSP00000040877/1-1621 VPLAAGFQWY LSQTQLSKLK PGDWSQQDIG TNLVEADNQA EWTDVQKKII ENSBTAP00000005936/1-1313 IPLGAGFQWY LSTTHLCELK PGDWSQQDAG SNSGEADNQS EWTDVQKKII bmy_09321T0/1-1205 IPLDAGFQWY LSPTQLCELK PGDWSQQDIG SNSGEADNES EWSDVQKKII ENSTTRP00000008263/1-1542 IPLDARFQWY LSPAQLCELK PGDWSQQDIG SNSGEADNES EWSDVQKKII BACU004999/1-1279 IPLDAGFQWY LSPTQLCELK PGDWSQQDIG SNSGEADNES EWSDVQKKII 1451 1500 ENSP00000040877/1-1621 PWNSRVSDLD LELLFQDRAA RLGKSISRLI VVASLIDKPT NLGGLCRTCE ENSBTAP00000005936/1-1313 PWKNHVPDFD LELVFQDRAA KLGKSISRLI VVASLIDKPT NLGGLCRTCE bmy_09321T0/1-1205 PWRNSVPDLD LELVFQDRAA KLGKSLSRLI VVASLIDKPT NLGGLCRTCE ENSTTRP00000008263/1-1542 PWRNNVPDLD LELVFQDRAA KLGKSLSRLI VVASLVDKPT NLGGLCRTCE BACU004999/1-1279 PWRNSVPDLD LELVFQDRAA KLGKSLSRLI VVASLIDKPT NLGGLCRTCE 1501 1550 ENSP00000040877/1-1621 VFGASVLVVG SLQCISDKQF QHLSVSAEQW LPLVEVKPPQ LIDYLQQKKT ENSBTAP00000005936/1-1313 VFGAAALVMG SLQCVRDKQF QHLSVSAEQW LPLVEVKPPQ LIDYLQQKKA bmy_09321T0/1-1205 VFGASALVVG NLQCIRDKQF QHLSVSAEQW LPLVEVKPPQ LIDYLQQKKA ENSTTRP00000008263/1-1542 VFGASALVVG SLQCIRDKQF QHLSVSAEQW LPLVEVKPPQ LIDYLQQKKA BACU004999/1-1279 VFGASALVVG NLQCIRDKQF QHLSVSAEQW LPLVEVKPPQ LTDYLQQKKA 1551 1600 ENSP00000040877/1-1621 EGYTIIGVEQ TAKSLDLTQY CFPEKSLLLL GNEREGIPAN LIQQLDVCVE ENSBTAP00000005936/1-1313 EGYTIVGVEQ TAKSLDLTRY CFPEKSLLLL GNEREGIPAN LIQQLDVCVE bmy_09321T0/1-1205 EGYTIVGVEQ TVKSLDLTQY CFPEKSLLLL GNEREGIPAN LIQQLDVCVE ENSTTRP00000008263/1-1542 EGYTI----- ---------- ---------- ---------- ---------- BACU004999/1-1279 EGYTIVGVEQ TVKSLDLTQY CFPEKSLLLL GNEREGIPAN LIQQVDVCVE 1601 1650 ENSP00000040877/1-1621 IPQQGIIRSL NVHVSGALLI WEYTRQQLLS HGDTKP ENSBTAP00000005936/1-1313 IPQQGIIRSL NVHVSGALLI WEYTRQQLLK QGVSTA bmy_09321T0/1-1205 IPQQGIIRSL NVHVSGALLI WEYTRQQLLK QGGPGS ENSTTRP00000008263/1-1542 ---------- ---------- ---------- ------ BACU004999/1-1279 IPQQGITRSL NVHVSGALLI WEYTRQQLLK QGDPGS