KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:27:56 2014 Check: 00 .. Name: BACU015382/1-353 Len: 502 Check: 1046 Weight: 1.00 Name: bmy_04190T0/1-482 Len: 502 Check: 1568 Weight: 1.00 Name: ENSP00000378548/1-494 Len: 502 Check: 1543 Weight: 1.00 Name: ENSBTAP00000005938/1-474 Len: 502 Check: 5195 Weight: 1.00 // 1 50 BACU015382/1-353 ---------- ---------- ---------- ---------- ---------- bmy_04190T0/1-482 MEKQPPPPV- RPPVNTALSG SPHPGAPSAA GTPGGTSSAA TA-------- ENSP00000378548/1-494 MEEPQPP--- RPPASMALLG SQHSGAPSAA GPPGGTSSAA TA-AVLSFST ENSBTAP00000005938/1-474 MEEQPPPPLV RPPVSTALSG SPHPGAPSPA GTPGGTSSAA TAVAVLSFST 51 100 BACU015382/1-353 ---------- ---------- ---------- ---------- ---------- bmy_04190T0/1-482 -AAAALGNQS GASGGDSTGA SAGGGLGGRG AAG------R PPPGPAAAPL ENSP00000378548/1-494 VATAALGNLS DASGGGTAAA PGGGGLGGSG AAREAGAAVR RPLGPEAAPL ENSBTAP00000005938/1-474 AAAAALGNRS DAG------- ---------- ---------R PPLGPEAAPL 101 150 BACU015382/1-353 ---------- ---------- --------MG VIVKHRQLRT VTNASILSLS bmy_04190T0/1-482 LSQGAAVAAQ TLVLLLIFLL SSLGNCAVMG VIVKHRQLRT VSNAFILSLS ENSP00000378548/1-494 LSHGAAVAAQ ALVLLLIFLL SSLGNCAVMG VIVKHRQLRT VTNAFILSLS ENSBTAP00000005938/1-474 LSHGAAVAAQ ALVLLLIFLL SSLGNCAVMG TIVKHRQLRT VTNAFILSLS 151 200 BACU015382/1-353 LSDLLTALLC LPAAFLDLFT PPEGPAP--- AAAAGPWRGF CAASRFFSWC bmy_04190T0/1-482 LSDLLTALLC LPAAFPDLFT PPEGPAP--- AAAAGPWRGF CAASRFFSSC ENSP00000378548/1-494 LSDLLTALLC LPAAFLDLFT PPGGSAP--- AAAAGPWRGF CAASRFFSSC ENSBTAP00000005938/1-474 LSDLLTALLC LPAAFLDLFT PPGGPAPAAT AAAAGPWSGF CAASRFFSSC 201 250 BACU015382/1-353 FGIVSTLSVA LISLDRYCAI VRPPREKIGR RRALQLLAGA WLAALGFSLP bmy_04190T0/1-482 FGIVSTLSVA LISLDRYCAI VRPPREKIGR RRALQLLAGA WLAALGFSLP ENSP00000378548/1-494 FGIVSTLSVA LISLDRYCAI VRPPREKIGR RRALQLLAGA WLTALGFSLP ENSBTAP00000005938/1-474 FGIVSTLSLA LISLDRYCAI VRPPREKIGR RRALQLLAGA WLAALGFSLP 251 300 BACU015382/1-353 WELLRATWES P-AAQSFHGY LYRTSPDPAQ LGAAYSVGLV VACYLLPFLL bmy_04190T0/1-482 WELLRATWES P-AAQSFHGC LYRTSPDAAQ LGAAYSVGLV VACYLLPFLL ENSP00000378548/1-494 WELLGAPREL A-AAQSFHGC LYRTSPDPAQ LGAAFSVGLV VACYLLPFLL ENSBTAP00000005938/1-474 WELLLTPREA PAAAQSFHRC LYRTSPDPAQ LGAAYSVGLV VACYLLPFLL 301 350 BACU015382/1-353 MCFCHYHVCR TVRLSDLRVR PLTTYARVLR SFSGVRTATA VLIMLVFVIC bmy_04190T0/1-482 TCFCHYHVCR TVRLSDLRVR PLTTYARVLR FFSGVRTATT VLIMHVFVIC ENSP00000378548/1-494 MCFCHYHICK TVRLSDVRVR PVNTYARVLR FFSEVRTATT VLIMIVFVIC ENSBTAP00000005938/1-474 MCFCHYHICK TVRLSDVRVR PLTTYARVLR FFSDVRTATT VLIMIVSVIC 351 400 BACU015382/1-353 CWGPYCFLVL LTAARQAQAM QAPSLLNVVA VRLTWANGVI NPVIYAIRNP bmy_04190T0/1-482 CWGPYCFLVL LTAARQVQAT QAPSLLNVVA VRLTWANGVI NPVIYAIRNP ENSP00000378548/1-494 CWGPYCFLVL LAAARQAQTM QAPSLLSVVA VWLTWANGAI NPVIYAIRNP ENSBTAP00000005938/1-474 CWGPYCFLVL LAAARRAQAA QSPSLLNVVA VWLTWANGAI NPVIYAVRNP 401 450 BACU015382/1-353 NISMLLGRNR EEGYRTRNTD VFLPTRARLC RLEAAIPFET AIATAWGPAA bmy_04190T0/1-482 NISMLLGRNR EEGYRTRNMD VFLPNQGPAL PARSRNPLRN RYSNGLGACS ENSP00000378548/1-494 NISMLLGRNR EEGYRTRNVD AFLPSQGPGL QARSRSRLRN RYANRLGACN ENSBTAP00000005938/1-474 NISMLLGRNR EEGYRTRNVD ALLPNQGRAL QAGTLNLLRN RCTNRLGAWS 451 500 BACU015382/1-353 GCPLPTRPAW WEGT---WPC GLAKIQLCFS ---------- ----AWRGHQ bmy_04190T0/1-482 RMSSSNPTSV VGGDVAMWAR KNPVVLFCPE GPPDPVTAAA KQPKSEAGDT ENSP00000378548/1-494 RMSSSNPASG VAGDVAMWAR KNPVVLFCRE GPPEPVTAVT KQPKSEAGDT ENSBTAP00000005938/1-474 TMSSSNPTSG VAGDMAMWAR KNPVVLFCRE GPPDPVTAAA KQ--SESGDT 501 550 BACU015382/1-353 IL bmy_04190T0/1-482 SL ENSP00000378548/1-494 SL ENSBTAP00000005938/1-474 SL