KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:27:58 2014 Check: 00 .. Name: ENSP00000309124/1-273 Len: 275 Check: 2242 Weight: 1.00 Name: ENSBTAP00000005975/1-273 Len: 275 Check: 3491 Weight: 1.00 Name: bmy_05515T0/1-219 Len: 275 Check: 6727 Weight: 1.00 Name: ENSTTRP00000008575/1-273 Len: 275 Check: 2356 Weight: 1.00 // 1 50 ENSP00000309124/1-273 MTFDDLKIQT VKDQPDEKSN GKKAKGLQ-F LYSPWWCLAA ATLGVLCLGL ENSBTAP00000005975/1-273 MTVDD--PKG MKDQLDQKPN GKTAKGTTGF VSSWRWYPAA VTLGVLCLGL bmy_05515T0/1-219 MTFDDLKSKS MKDQLDQKPN GERDK----- ---------- ---------- ENSTTRP00000008575/1-273 MTFADLKSQS MKGQLDQKPN GERDKGLR-F LSSRRWYPAV MALGILCLGL 51 100 ENSP00000309124/1-273 VVTIMVLGMQ LSQVSDLLTQ EQANLTHQKK KLEGQISARQ QAEEASQESE ENSBTAP00000005975/1-273 LVTVILLILQ LSQVSDLIKK QQANITHQED ILEGQILAQR RSEKSAQESQ bmy_05515T0/1-219 ---------- VSQVSDLLKQ XHANLTHQED ILEGQISAQH QTEESSQESQ ENSTTRP00000008575/1-273 LVTVILLIIQ LSQVSDL-KQ QQANLTHQED ILKGQISAQP QTEKSSQESQ 101 150 ENSP00000309124/1-273 NELKEMIETL ARKLNEKSKE QMELHHQNLN LQETLKRVAN CSAPCPQDWI ENSBTAP00000005975/1-273 KELKEMIETL AHKLDEKSKK LMELHRQNLN LQEVLKEAAN YSGPCPQDWL bmy_05515T0/1-219 WELKEMIETL AHKLDEKSKK LMELHHQNLN LQETLKKAAN YSGPCPQDWL ENSTTRP00000008575/1-273 GELKEMIETL AHKLDEKSKK LMELHHQNLN LQEALKKAAN YSGPCPQDWL 151 200 ENSP00000309124/1-273 WHGENCYLFS SGSFNWEKSQ EKCLSLDAKL LKINSTADLD FIQQAISYSS ENSBTAP00000005975/1-273 WHEENCYQFS SGSFNWEKSQ ENCLSLDAHL LKINSTDELE FIQQTIAHSS bmy_05515T0/1-219 WHEENCYQFS SGPFNWEKSR ENCLSLDAHM LKINSSDDL- ---------- ENSTTRP00000008575/1-273 WHEENCYQFS SGPFNWEKSR ENCLSLDAHM LKINSSDDLE FIQQAIVHSS 201 250 ENSP00000309124/1-273 FPFWMGLSRR NPSYPWLWED GSPLMPHLFR VRGAVSQTYP SGTCAYIQRG ENSBTAP00000005975/1-273 FPFWMGLSMR KPNYSWLWED GTPLTPHLFR IQGAVSRMYP SGTCAYIQRG bmy_05515T0/1-219 ---------- KPNHSWLWED GSPLMPHLFR LQGAVFQMYP SGTCAYIQRG ENSTTRP00000008575/1-273 FPFWMGLSLK KPNYSWLWED GSPLMPHLFR LQGAAFQMYS SGTCAYIQRG 251 300 ENSP00000309124/1-273 AVYAENCILA AFSICQKKAN -LRAQ ENSBTAP00000005975/1-273 TVFAENCILT AFSICQKKAN LLRAQ bmy_05515T0/1-219 TVFAENCILT AFSICQKKAN LLRVQ ENSTTRP00000008575/1-273 AVFAENCILT AFSICQKKAN LLRVQ