KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:58 2014 Check: 00 .. Name: bmy_01882T0/1-684 Len: 739 Check: 9057 Weight: 1.00 Name: ENSP00000321971/1-618 Len: 739 Check: 5967 Weight: 1.00 Name: ENSBTAP00000005979/1-587 Len: 739 Check: 1136 Weight: 1.00 Name: BACU018840/1-631 Len: 739 Check: 40 Weight: 1.00 Name: ENSTTRP00000003832/1-622 Len: 739 Check: 5617 Weight: 1.00 // 1 50 bmy_01882T0/1-684 MKRDVRILLL GE-------- ---------- ---------- ---------- ENSP00000321971/1-618 MRRDVRILLL GEAQVGKTSL ILSLVGEEFP EEVPPRAEEI TIPADVTPEK ENSBTAP00000005979/1-587 ---------- ---------- ---------- -QVPARAEEI TIPADVTPEK BACU018840/1-631 MKRDVRILLL GEAQVGKTSL ILSLVGEEFP EEVPPRAEEI TIPADVTPEK ENSTTRP00000003832/1-622 MKRDVRILLL GEAQVGKTSL ILSLVGEEFP EEVPPRAEEI TIPADVTPEK 51 100 bmy_01882T0/1-684 ---------E AEQTVEELQD EIHKANVVCV VYDMSEEATI EKIRTKWIPL ENSP00000321971/1-618 VPTHIVDYSE AEQTDEELRE EIHKANVVCV VYDVSEEATI EKIRTKWIPL ENSBTAP00000005979/1-587 VPTHIVDYSE TEQTVEELQG EIDKADVVCV VYDVSEEATV EKIRTKWIPL BACU018840/1-631 VPTHIVDYSE AEQTVEELQD EIHKANVVCV VYDVSEEATI EKIRTKWIPL ENSTTRP00000003832/1-622 VPTHIVDYSE AEQTVEELQD EIHKANVVCV VYDVSEEATI EKIRTKWIPL 101 150 bmy_01882T0/1-684 VNGDTKRGPR VPIILVGNKS DLRPGGSMEA VLPIMSQFPE IETCVECSAK ENSP00000321971/1-618 VNGGTTQGPR VPIILVGNKS DLRSGSSMEA VLPIMSQFPE IETCVECSAK ENSBTAP00000005979/1-587 VNGDTKRGPR VPIILVGNKS DLRPGGSMEA VLPIMSQFPE IETCVECSAK BACU018840/1-631 VNGDTKRGPR VPIILVGNKS DLRPGGSMEA VLPIMSQFPE IETCVECSAK ENSTTRP00000003832/1-622 VNGDTKRGPR VPIILVGNKS DLRPGGSMEA VLPIMSQFPE IETCVECSAK 151 200 bmy_01882T0/1-684 NLKNISELFY YAQKAVLHPT APLYDPEAKQ LMPKCAQALT RIFRLSDQDM ENSP00000321971/1-618 NLRNISELFY YAQKAVLHPT APLYDPEAKQ LRPACAQALT RIFRLSDQDL ENSBTAP00000005979/1-587 NLKNISELFY YAQKAVLHPT APLYDPEAKQ LRPACAQALT RIFRLSDQDM BACU018840/1-631 NLKNISELFY YAQKAVLHPT APLYDPEAKQ LMPKCAQALT RIFRLSDQDM ENSTTRP00000003832/1-622 NLKNISELFY YAQKAVLHPT APLYDPEAKQ LMPECAQALT RIFRLSDQDM 201 250 bmy_01882T0/1-684 DQVLSDQELN AFQMSCFGHP LAPQALEDVK MVVSKNVAGG VRDDRLTLDG ENSP00000321971/1-618 DQALSDEELN AFQKSCFGHP LAPQALEDVK TVVCRNVAGG VREDRLTLDG ENSBTAP00000005979/1-587 DQALSDQELN AFQTSCFGHP LAPQALEDVK MVVSKNVVGG VRDDQLTLDG BACU018840/1-631 DQVLSDQELN AFQMSCFGHP LAPQALEDVK MVVSKNVAGG VQDDRLTLDG ENSTTRP00000003832/1-622 DQVLSDQELN AFQMSCFGHP LAPQALEDVK VVVSKNVAGG VRDDRLTLDG 251 300 bmy_01882T0/1-684 FLFLNMLFIQ RGRHETTWTI LRRFGYGDSL ELTANYLCPP LRVPPGCSTE ENSP00000321971/1-618 FLFLNTLFIQ RGRHETTWTI LRRFGYSDAL ELTADYLSPL IHVPPGCSTE ENSBTAP00000005979/1-587 FLFLNTLFIQ RGRHETTWTI LRRFGYGDSL ELTADYLCPP LRVPPGCSAE BACU018840/1-631 FLFLNMLFIQ RGRHETTWTI LRRFGYGDSL ELTANYLCPP LRVPPGCSTE ENSTTRP00000003832/1-622 FLFLNTLFIQ RGRHETTWTI LRRFGYGDSL ELTANYLCPP LHVPPGCSTE 301 350 bmy_01882T0/1-684 LNHRGYQFVQ RMFEKHDQDR DGALSPAELQ SLFSVFPAAP WGPQLPRTVR ENSP00000321971/1-618 LNHLGYQFVQ RVFEKHDQDR DGALSPVELQ SLFSVFPAAP WGPELPRTVR ENSBTAP00000005979/1-587 LNHRGYQFVQ RMFEKHDQDR DGALSPAELQ SLFSVFPAAP WGPHLPSTVR BACU018840/1-631 LNHRGYQFVQ RMFEKHDQDR DGALSPAELQ SLFSVFPAAP WGPQLPRTVR ENSTTRP00000003832/1-622 LNHRGYQFVQ RMFEKHDQDR DGALSPAELQ SLFSVFPAAP WGPQLPRTVR 351 400 bmy_01882T0/1-684 TEAGRLPLHG YLCQWTLVTY LDVQHCLEHL GYLGFPTLCE QDSQAHAITV ENSP00000321971/1-618 TEAGRLPLHG YLCQWTLVTY LDVRSCLGHL GYLGYPTLCE QD-QAHAITV ENSBTAP00000005979/1-587 TKAGRLPLHG YLCQWTLVTY LDVRRSLEHL GYLGYPTLCE QDSQAHAITV BACU018840/1-631 TEAGRLPLHG YLCQWTLVTY LDVQHCLEHL GYLGFPTLCE QDSQAHAITV ENSTTRP00000003832/1-622 TEAGRLPLHG YLCQWTLVTY LDVQHCLEHL GYLGFPTLCE QDSQAHAITV 401 450 bmy_01882T0/1-684 TREKRLDQEK GQTQRNVFLC KVVGAHGVGK SSFLQAFLGR GLGVSVRVCR ENSP00000321971/1-618 TREKRLDQEK GQTQRSVLLC KVVGARGVGK SAFLQAFLGR GLG------- ENSBTAP00000005979/1-587 TREKRLDQEK GQTQRNVLLC KVVGARGVGK SSFLRAFLGH SLG------- BACU018840/1-631 TREKRLDQEK GQTQRNVFLC KVVGARGVGK SSFLQAFLGR GLG------- ENSTTRP00000003832/1-622 TREKRLDQEK GQTQRNVFLC KVVGARGVGK SSFLQAFLGH GLG------- 451 500 bmy_01882T0/1-684 AWTWGAGVLE RVRTASFRGV PLHQDAGEPA GEPSAYTIDT VQVNGQEKYL ENSP00000321971/1-618 ---------- ---------- --HQDTRE-- -QPPGYAIDT VQVNGQEKYL ENSBTAP00000005979/1-587 ---------- ---------- --HQDAGE-- --PSVYAIDT VQVNGQEKYL BACU018840/1-631 ---------- ---------- ----DAGEPA GEPSAYTIDT VQVNGQEKYL ENSTTRP00000003832/1-622 ---------- ---------- --HQDAGEPA GESSAYTIDT VQVNGQEKYL 501 550 bmy_01882T0/1-684 ILCEVGADSL LTASADATCD IACLMFDSSH PSATTWTGRP PASSSPPRLT ENSP00000321971/1-618 ILCEVGTDGL LATSLDATCD VACLMFDGSD PKSF------ ---------- ENSBTAP00000005979/1-587 ILCEVAADSL LTASADASCD VACLMFDGSD LRSF------ ---------- BACU018840/1-631 ILCEVGADSL LTASADATCD IACLMFDSRH PRSF------ ---------- ENSTTRP00000003832/1-622 ILCEVGADSL LTTSADATCD IACLMFDSSH PRSF------ ---------- 551 600 bmy_01882T0/1-684 CPKASCCLVC LRLSSAVGTG CPPPPCSLVP AQPSPARPSS PGLPPWPPSR ENSP00000321971/1-618 ---AHCASVY ---------- ---------- -------K-- ---------H ENSBTAP00000005979/1-587 ---ALCASVY ---------- ---------- -------K-- ---------Q BACU018840/1-631 ---SLCASVY ---------- ---------- -------KAS TLTWPLPLQR ENSTTRP00000003832/1-622 ---SLCASVY ---------- ---------- -------K-- ---------R 601 650 bmy_01882T0/1-684 GYQDRS-PCV GDPSLSQESG TAVVSGLESV KVAGWALVPV PMPRRGPRGL ENSP00000321971/1-618 HYMDGQTPCL FVSSKADLPE GVAVSGPSPA EFCRKHRLPA PVP------- ENSBTAP00000005979/1-587 HYMDGQTPCL FVCSKADLPG GVPLPGLSPA EFCRRHRLPT PTL------- BACU018840/1-631 HYMDRQTPCL FVSSKADLPE GVLLPGLSPT EFCRRHRLPA PAL------- ENSTTRP00000003832/1-622 HYMDRQTPCL FVSSKADLPE GVLLPGLSPT EFCRRHRLPA PAL------- 651 700 bmy_01882T0/1-684 ASQAALSSGG PAMLGTDTEQ LSGALGLCRR RRWGYSSKTP LSPADTLSTG ENSP00000321971/1-618 -----FSCAG PAEPSTTI-- ---------- ----FTQLAT MAAFPHLVHA ENSBTAP00000005979/1-587 -----FSCAG PVEPCMGI-- ---------- ----FTRLAT MATFPHLVHG BACU018840/1-631 -----FSCVG PAEPRAAI-- ---------- ----FTRLAT MATFPHLVHG ENSTTRP00000003832/1-622 -----FSCAG PAEPRAAI-- ---------- ----FTRLAT MAAFPHLVHG 701 750 bmy_01882T0/1-684 SCTPPPSGSG WRWGPSGLPS LPFSASHSTG SW------- ENSP00000321971/1-618 ELHPSSF--- WLRGLLGVVG AAVAAVLSFS LYRVLVKSQ ENSBTAP00000005979/1-587 QLQATSF--- WLRVALGAMG AAVAAILSFS LYRVLVKSR BACU018840/1-631 ELHATSF--- WLRVALGAVG AAVAAVLSFS LYRVLVKSR ENSTTRP00000003832/1-622 ELHATSF--- WLRVALGAVG AAVAAVLSFS LYRVLVKSR