KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:59 2014 Check: 00 .. Name: ENSP00000357448/1-731 Len: 836 Check: 6612 Weight: 1.00 Name: ENSBTAP00000005980/1-727 Len: 836 Check: 2074 Weight: 1.00 Name: bmy_03364T0/1-822 Len: 836 Check: 303 Weight: 1.00 Name: ENSTTRP00000015335/1-731 Len: 836 Check: 7583 Weight: 1.00 Name: BACU007466/1-716 Len: 836 Check: 3116 Weight: 1.00 // 1 50 ENSP00000357448/1-731 ---MASCPDS DNSWVLA--G SESLPVETLG PASRMDPESE RALQAPHSPS ENSBTAP00000005980/1-727 ---MASCPDS DNSWVLA--G SESLPVETLG PESGNDPESE RAPRAPQSPS bmy_03364T0/1-822 ---MASCPDS DNSWVLA--G SENLPVETLG PESRMDPESE RAPQAPWSPS ENSTTRP00000015335/1-731 ---MASCPDS DNSWVLA--G SENLPVETLG PESGMDLESE RAPQAPWSPS BACU007466/1-716 MLFSPPSPFK KNSGILNPHR SRNLPVETLG PESRMDPESE RAPQAPWSPS 51 100 ENSP00000357448/1-731 KTDGKELAGT MDGEGTLFQT ESPQSGSILT EETEVK-GTL EGDVCGVEPP ENSBTAP00000005980/1-727 RAAAEESAGT LDGGETVSQN ESSKSGPILS EEAEAKQGVL EGDDPGVESP bmy_03364T0/1-822 KAAAEKLAGT LDGEETLFQS ESSQSRPILP EETEAK-GVL EGDDRGMEPP ENSTTRP00000015335/1-731 KAAAEELAGT LDGEETLFQS ESSQSRPILP EETEAK-GVL EGDDRGMESP BACU007466/1-716 KAAAEELAGT LDGEETLFQS ESSQSRPILP EETEAK-GVL EGDDRGMEPP 101 150 ENSP00000357448/1-731 GPGDTVVQGD LQETTVVTGL GPDTQDLEGQ SPPQSLPSTP KAAWIREEGR ENSBTAP00000005980/1-727 GPGDTEAQGD LEETPEVVGL EPDSQDLEDQ SPHRSLPSSP KTAWIREEAH bmy_03364T0/1-822 GPGDTEAQGD LEETPEAVAL GPDTQDLEDQ GPPNSLPSSP QTAWIREEAH ENSTTRP00000015335/1-731 GSGDTEVQGD LEETPEAVGL GLDTQDLEDQ SPPNSLLSSP QTAWIREEAH BACU007466/1-716 GPGDTEAQGD LEETPEAVAL GPDTQDLEDQ GPPNSLPSSP QTAWIREEAH 151 200 ENSP00000357448/1-731 CSSSDDDTDV DMEGLRRRRG REAGPPQPMV PLAVENQAGG EGAGGELGIS ENSBTAP00000005980/1-727 HSSSDDDTDV DVEGLRRRRG REPGTPQPAA TLGVEDQVQG EGAGGQLGIS bmy_03364T0/1-822 CSSSEDDTDM DMEGLRRRRG REPSIPQPAA PLGVEDQAGA EGAGRELGIS ENSTTRP00000015335/1-731 CSSSEDDTDM DVEGLRRRRG REPSTPQPAA PLGVEDQAGG EGAGRELGIS BACU007466/1-716 CSSSEDDTDM DVEGLRRRRG REPSTPQPVA PLGVEDQTGA EGAGRELGIS 201 250 ENSP00000357448/1-731 LNMCLLGALV LLGLGVLLFS GGLSESETGP MEEVERQVLP ----DPEVLE ENSBTAP00000005980/1-727 LNMCLLGSLV LLGLGVLLF- GGLSESESGP LEEVDLQVLP DVESDTEMLE bmy_03364T0/1-822 LNMCLLGALV LLGLGILLFS G--------P VEEADLQVFP DTGSDTEMLE ENSTTRP00000015335/1-731 LNMCLLGALV LLGLGILLFS GGLSEAESGP MEEADLQVFP DTGLDTEMLE BACU007466/1-716 LNMCLLGALV LLGLGILLFS GGLSEAESGP VEEADLQ--- ---------- 251 300 ENSP00000357448/1-731 AVGDRQ---- ----DGLREQ LQAPVPPDSV PSLQNMGLLL DKLAKENQDI ENSBTAP00000005980/1-727 AVGDGQ---- ----DGL-QQ LQTSEVLDSV PSLQNMALLL DKLAKENQDI bmy_03364T0/1-822 AEEDGQACVT LCIGDGLKQQ LQTSAPPDSV PSLQNMALLL DKLAKENQDI ENSTTRP00000015335/1-731 AEGDGQ---- ----DGLKQQ LPTSAPPDSV PSLQNMALLL DKLAKENQDI BACU007466/1-716 ---------- ----DGLKQQ LQTSVPPDSV PSLQNMALLL DKLAKENQDI 301 350 ENSP00000357448/1-731 RLLQAQLQAQ KEELQSLMHQ PKGLEEENAQ LRGALQQGEA FQRALESELQ ENSBTAP00000005980/1-727 RLLQAQLQAQ KEELQSLMRQ PKGLEEENAR LRGALQQGEA SQRALESELQ bmy_03364T0/1-822 RLLQAQLQAQ KEELQSLMHQ PKGLEEENAR LRGALQQGEA SQRALELELQ ENSTTRP00000015335/1-731 RLLQAQLQAQ KEELQSLMHQ PKGLEEENAR LRGALQQGEA SQRALELELQ BACU007466/1-716 RLLQAQLQAQ KEELQSLMRQ PKGLEEENAR LRGALQQGEA SQRALELELQ 351 400 ENSP00000357448/1-731 QLRARLQGLE ADCVRGPDGV CLSGGRGPQG DKAIREQGPR EQEPELSFLK ENSBTAP00000005980/1-727 QLRAQLQGLE ADCVQGADGL CLQWGRGPQA GQVTKEQGPT GQEPSPGFLE bmy_03364T0/1-822 QLRAQLQGLE ADCVRGTDGV CLYGGRGLRA GKVTKEQGPR GHVPSPGFLE ENSTTRP00000015335/1-731 QLRAQLQGLE ADCVRGSDGV CRYGGRGLRA GRVTKEQGPR GQVPSPGFLE BACU007466/1-716 QLRAQLQGLE ADCVRGTDGV CLYGGRGLRA GKVTKEQGPR GQVPSPGFLE 401 450 ENSP00000357448/1-731 QKEQLEAEAQ ALRQELERQR RLLGSVQQDL ERSLQDASRG DPAHAGLAEL ENSBTAP00000005980/1-727 QKKQLEAEAQ ALRQELERQR RLLGSVQQDL ERSLKEAGRG DPARAGLAEL bmy_03364T0/1-822 QKKQLEAEAQ ALRQELERQR RLLGSVQRDL EQSLRDAGRG DPAHAGLAEV ENSTTRP00000015335/1-731 QKKQLEAEAQ SLRQELERQR RLLGSVQRDL EQSLRDVGRG DPAHAGLAEV BACU007466/1-716 QKKQLEAEAQ ALRQELERQR RLLGSVQQDL EQSLRDAGRG DPAHAGLAEV 451 500 ENSP00000357448/1-731 GHRLAQKLQG LENWGQDPGV SANASKAWHQ KSHFQNSREW SGKEKWWDGQ ENSBTAP00000005980/1-727 GHRLAQKLRG LENWGQHPGV PANVSEAWHQ KPHFQNSREP SGKEKWWDRQ bmy_03364T0/1-822 GHRLAQKLRR LENWGQRPGV PANASEAWHQ EPHFQSSREW SGKEKWWDGQ ENSTTRP00000015335/1-731 GHRLAQKLQG MENWGQRPGV PANASEAWHQ EPHFQSSREW SGKEKWWDGQ BACU007466/1-716 GHRLAQKLRG LENWGQRPGV PANASEAWHQ EPHFQSSREW SGKEKWWDGQ 501 550 ENSP00000357448/1-731 RDRKAEHWKH KKEESGRERK KNWGGQEDRE PAGRWKEGRP RVEESGSKKE ENSBTAP00000005980/1-727 GDWKTEHWKH KKEASGRE-- KSWRGEEDRE LVGRRKEGKP RVEEWAGKKD bmy_03364T0/1-822 RDRKTDHWKH KKEESGREKK KSWGGEEDRE LVGRWKEGKP RVEEWASKKD ENSTTRP00000015335/1-731 RDRKTDYWKH KKEESGREKK KNWGGEEDRE LAGRWKEGKP WVEEWASKND BACU007466/1-716 RDRKTDHWKH KKEESGREKK KSWGGEEDRE LAGRWKEGKP RV-EWASKKD 551 600 ENSP00000357448/1-731 GKRQGPKEPP RKSGSFHSSG EKQKQPRWRE GTKDSHDPLP SWAELLRPKY ENSBTAP00000005980/1-727 GKQQRSKEPP RKSGRPHPSG ERQKHPRWKE GAKDRHDPLP LWAELSRHKY bmy_03364T0/1-822 GKRQGSKEPP RKSGSPHSSR ERQKHPQWKE GAKDRHDPLP LWAELLRHKY ENSTTRP00000015335/1-731 SKQQGSKEPP RKSGSPHSSR ERQKHPQWKE GAKDRHDPLP LWAELLRHKY BACU007466/1-716 GKQQGSKEPP RKSGSPHSSR GRQKHPQWKE GAKDRHDPLP LWAELLRHKY 601 650 ENSP00000357448/1-731 RAPQGCSGVD ECARQEGLTF FGTELAPVRQ QELASLLRTY LARLPWAGQL ENSBTAP00000005980/1-727 QAPQGCSGVH ECARQEGLAF FGIELAPVRQ QELASLLRTY LARLPWAGPL bmy_03364T0/1-822 QAPQGCSGVH ECARQEGLAF FGMELAPVRQ QELASLLRTY LARLPWAGQL ENSTTRP00000015335/1-731 QAPQGCSGVH ECARQEGLAF FGMELAPVRQ QELASLLRTY LARLPWARQL BACU007466/1-716 QAPQGCSGVH ECARQEGLAF FGMELAPVRQ QELASLLRTY LARLPWAGQL 651 700 ENSP00000357448/1-731 TKELPLSPAF FGEDGIFRHD RLRFRDFVDA LEDSLEEVAV QQTGDDDEVD ENSBTAP00000005980/1-727 TEELPLSPAY FGEDGIFRHD RLRFRDFVDA LEDQLEEVAV RQTGDDDAVD bmy_03364T0/1-822 TKELPLSPAY FGEDGIFRHD RLRFRDFVDA LEDSLEEVAV RQTGDDDEVD ENSTTRP00000015335/1-731 TEELPLSPAY FGEDGIFRHD RLRFRDFVDA LEDSLEEVAV RQTGDDDEVD BACU007466/1-716 TEELPLSPAY FGEDGIFRHD RLRFRDFVDA LEDSLEEVAV RQTGDDDEVD 701 750 ENSP00000357448/1-731 DFEDFIFSHF FGDKALKKR- --------SG KKDKH----- ---------- ENSBTAP00000005980/1-727 DFEDFIFSHF FGDKALKKR- --------SG KKDKH----- ---------- bmy_03364T0/1-822 DFEDFIFSHF FGDKALKKRW ASCGGVGSVG QSRRQEVMVW EEGQTLAEPQ ENSTTRP00000015335/1-731 DFEDFIFSHF FGDKALKKR- --------SG KKDKH----W R--------- BACU007466/1-716 DFEDFIFSHF FGDKALKKR- --------SG KKDKH----W R--------- 751 800 ENSP00000357448/1-731 ---------- ---SQSPRAA GPREGHSHS- ---------- -HHHHHRG-- ENSBTAP00000005980/1-727 ---------- ----LQNRVV GPREE----- ---------- -HSPHRQG-- bmy_03364T0/1-822 SCGAQGGTQP PAPGLRPRAV CPLGTVKLPP PLARLVSLDI LHRGERKSPS ENSTTRP00000015335/1-731 ---------- -----KPRVV GPREE----- ---------- -HSHQRQG-- BACU007466/1-716 ---------- -----NPRVV GPREE----- ---------- -HSHQRQG-- 801 850 ENSP00000357448/1-731 ---------- ---------- ---------- ------ ENSBTAP00000005980/1-727 ---------- ---------- ---------- ------ bmy_03364T0/1-822 PALKPLLLEK GLSWTCLAIY ANVCKCSGPW AVTLAA ENSTTRP00000015335/1-731 ---------- ---------- ---------- ------ BACU007466/1-716 ---------- ---------- ---------- ------