KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:09 2014 Check: 00 .. Name: ENSP00000272367/1-589 Len: 805 Check: 8534 Weight: 1.00 Name: ENSBTAP00000005991/1-543 Len: 805 Check: 2732 Weight: 1.00 Name: ENSTTRP00000010731/1-583 Len: 805 Check: 1249 Weight: 1.00 Name: bmy_18388T0/1-602 Len: 805 Check: 4631 Weight: 1.00 Name: BACU006030/1-799 Len: 805 Check: 7533 Weight: 1.00 // 1 50 ENSP00000272367/1-589 -----MDGEA VRFCTDNQCV SLHPQEVDSV AMAPAAPKIP RLVQATPAFM ENSBTAP00000005991/1-543 MKEAETRADQ VHFCTENQNV SLSSQGLDPV AVVPAAPRMP RRLQATLASL ENSTTRP00000010731/1-583 -----MRGDE VHFCTGNQSV SLCSRGLDPG AVAPAAPKMP RRLQAILAFL bmy_18388T0/1-602 -----MRGDE VRFCTGNQSV SLCSRGLDPG AVAPAAPKMS RRLQATLAVV BACU006030/1-799 -KEAEMRGDE VHFCTGNQSV SLCSRGLDPG AVAPAAPKMS RRLQATLAVL 51 100 ENSP00000272367/1-589 AVTLVFSLVT LFVVVQQQTR PVPKPVQAV- -ILGDNITGH LPFEPNNHHH ENSBTAP00000005991/1-543 GVFLVSCLVV LFIVALQHPR PALDTSAYFQ EFLGDNHTGQ FLKERDYPYH ENSTTRP00000010731/1-583 AATVVSSLVA LFVVALQHRR PALE----LA PRPEHNSTGQ FLKAHDYPYH bmy_18388T0/1-602 AVTVVSSLVA LFVVALQHPR PSLEAYASLQ EFPEDNSTGQ FHKAPDYPYH BACU006030/1-799 AVTVVSSLVA LFVVALQHPR PALEAYASLR EFPEDNSTGQ FLKAPDDPYH 101 150 ENSP00000272367/1-589 FGREAEMREL IQTFKGHMEN SSAWVVEIQM LKCRVDNVNS QLQVLGDHLG ENSBTAP00000005991/1-543 SVRVAEFQEA VQLFKGHMEN SSTWSVEIQL LTCRVDNVSS QIQMLGGDLE ENSTTRP00000010731/1-583 FGREAELQEA IQMFKGHVEN SSTWSVEIQM LTYRVDNVSS QIQMLGGHLE bmy_18388T0/1-602 FGRGAELQEA IQMFKGHVEN SSTWSVEIQM LTCRVDNVSS QIQTLGGHLE BACU006030/1-799 FGRGAELQEA IQMFKGHVEN SSTWSVEIQM LTCRVDNVSS QIQMLGGHLE 151 200 ENSP00000272367/1-589 NTNADIQMVK GVLKDATTLS LQTQMLRSSL EGTNAEIQRL KEDLEKADAL ENSBTAP00000005991/1-543 SASADIQMLK GLLKDASALS FQTQLLRSSL EETTSKIQKL QGDLEEANGS ENSTTRP00000010731/1-583 NASVDLQMVK DILKDASTLS FQTQMLRSSL EGTTSEMQKL KGDLEDTQAS bmy_18388T0/1-602 SASADLQMVK GILKDASTLS FQTQMLRSSL EGTTSEMQKL KGDLEETQAS BACU006030/1-799 SASADLQMVK GILKDTSTLS FQTQMLRSSL EGTTSEMQKL KGDLEETQAS 201 250 ENSP00000272367/1-589 TFQTLNFLKS SLENTSIELH VLSRGLENAN SEIQMLNASL ETANTQAQLA ENSBTAP00000005991/1-543 NSQIQGSFKS SLENTSIELL VLSRGLENAN TEIQV----- ---------- ENSTTRP00000010731/1-583 HSQIQSFLRS GLENTSTELH MLSRGLENAN TEIQVLKAGL ETADAQVRLA bmy_18388T0/1-602 HSQIQSFLKS SLENTSTELH MLSRGLENAN TEIQVLKAGL EMANAQVRLA BACU006030/1-799 HSQIQSFLKS SLENTSTELH MLSRGLENAN TEIQVLKAGL ETANAQVRLA 251 300 ENSP00000272367/1-589 NSSLKNANAE IYVLRGHLDS VNDLRTQNQV LRNSLEGANA EIQGLKENLQ ENSBTAP00000005991/1-543 ---------- ---------- ---------- ---------- ----LKGSLQ ENSTTRP00000010731/1-583 NSSLKNVNAQ IHVLRGDLDS VNDLRAQQKV LRSSLEGATA EMQKLKGSLQ bmy_18388T0/1-602 NSSLKNVNAQ IHGLRGSLDS VNDLRAQQKV LRSSLEGATA EMQKLKGSLQ BACU006030/1-799 NSSLKNVNAQ IHGLRGNLDS VNDLRAQQKV LRSSLEGATA EMQKLKGSLQ 301 350 ENSP00000272367/1-589 NTNALNSQTQ AFIKSSFDNT SAEIQFLRGH LERAGDEIHV LKRDLKMVTA ENSBTAP00000005991/1-543 NANALNSQTQ TFVRGSLDNT SAQIQVLRSH LERAGGEIHL LKRDLENVTA ENSTTRP00000010731/1-583 NTNALNSQTQ TFIKGSLGNT SAEIQVLRGH LERAGDEIRL LKGDLETVTA bmy_18388T0/1-602 NTNALNSQTQ TFIKGSLGNT SAEIQVLRGH LERAGDEIRL LKRDLETVTA BACU006030/1-799 NTNALNSQTQ TFIKGSLGNT SAEIQVLRGH LERAGDEIRL LKRDLETVTA 351 400 ENSP00000272367/1-589 QTQKANGRLD QTDTQIQVFK SEMENVNTLN AQIQVLNGHM KNASREIQTL ENSBTAP00000005991/1-543 QTQTASSHLE QTDAEMRVLK TELESAIALS SKIQVLNGLL RNASQEIQTL ENSTTRP00000010731/1-583 QTQTVNGRLE QTDAQMRVLK TELESAIALS SKIQVLDGLL RNASREIQTL bmy_18388T0/1-602 QTQTVNGRLE QTDAQMRVLK TELESAIALS SKIQVLDGLL RNASREIQTL BACU006030/1-799 QTQTVNGRLE QTDAQMRVLK TELESAIALS SKIQVLDGLL RNASQEIQTL 401 450 ENSP00000272367/1-589 KQGMKNASAL TSQTQMLDSN LQKASAEIQR LRGDLENTKA LTMEIQQEQS ENSBTAP00000005991/1-543 KQGMKDAAAL QSQTQMLERS LQEARTEIQT LRKDLGNTKT LRTTIQEQQR ENSTTRP00000010731/1-583 KQGMKDAAAL NSKTQMLERN LQEARAEVHR LKEDLENTKA MTTKIQEEQG bmy_18388T0/1-602 KQGMKDAAAL NSKTXMLERN LQEARAEVHR LKEDLENTKA LTAKIQEEQG BACU006030/1-799 KQRMKDAAAL NSKTQMLERN LQEARAEVHR LKEDLENTKT LTAKIQEEQG 451 500 ENSP00000272367/1-589 RLKTLHVVIT SQEQLQRTQS QLLQMVLQGW KFNGGSLYYF SSVKKSWHEA ENSBTAP00000005991/1-543 SLESFRTALA SQEQLQRNHN QLFQLFLQGW KFYSGSLYYF SSAKKTWQEA ENSTTRP00000010731/1-583 SLETLRAASA SQEQLQRTQX XXXXXXXXXX XXXXXXXXXX XXXXXXWQEA bmy_18388T0/1-602 SLETLRATSA SQEQLQRTQN QLLQLILQGW KSYSGSLYYF SHAKKTWQEA BACU006030/1-799 SLETLRAASA SQEQLQRTQN QLLQLILQGW KSYSGSLYYF SHAKKTWQEA 501 550 ENSP00000272367/1-589 EQFCVSQGAH LASVASKEEQ AF-------- ---------- -LVEFTSKVY ENSBTAP00000005991/1-543 EQFCVSHGAH LASVTSEEEK TF-------- ---------- -LIQFTSSVY ENSTTRP00000010731/1-583 EQFCVSQGAH LASVTSEEEQ AF-------- ---------- -LVQFTSASY bmy_18388T0/1-602 EQFCVSQGAH LASVTSEEEQ AF-------- ---------- -LIQFTSASY BACU006030/1-799 EQFCVSQGAH LASVTSEEEQ VLDDVLREQF GPLPQLAAIC RLKRLPSGGY 551 600 ENSP00000272367/1-589 Y--------- ---------- ---------- ---------- ---------- ENSBTAP00000005991/1-543 H--------- ---------- ---------- ---------- ---------- ENSTTRP00000010731/1-583 H--------- ---------- ---------- ---------- ---------- bmy_18388T0/1-602 H--------- ---------- ---------- ---------- ---------- BACU006030/1-799 SSTEDLQLVL ERRRVANAKE RERIKNLNRG FAKLKTLVPF LPQSRKPSKV 601 650 ENSP00000272367/1-589 ---------- ---------- -------WIG LTDRGT---- ---------- ENSBTAP00000005991/1-543 ---------- ---------- -------WIG LTDHGT---- ---------- ENSTTRP00000010731/1-583 ---------- ---------- -------WIG LTDSDF---- ---------- bmy_18388T0/1-602 ---------- ---------- -------WIG LTDSGL---- ---------- BACU006030/1-799 DILKGTVLPV PRPDKRAVET SPHNRLPWFG EMPYKLASCV SLCLFAFQIK 651 700 ENSP00000272367/1-589 ---EGSWRWT DGTPF--NAA QNKAP----- ---------- ---------- ENSBTAP00000005991/1-543 ---EGHWRWT DGTAF--DRA RSRAF----- ---------- -------WAE ENSTTRP00000010731/1-583 ---QGFWRWA DGTPF--NSA GSSAP----- ---------- ---------- bmy_18388T0/1-602 ---QGFWRWA DGTPF--NSA RSSAF----- ---------- -------WDK BACU006030/1-799 NLNRGFAKLK TLVPFLPQSR KPSKVDILKG ATEYIQVLSD VLEGAKDSEK 701 750 ENSP00000272367/1-589 ---------- GSKGSCPL-- ---------- ---------- ---------- ENSBTAP00000005991/1-543 NQPDNWQHGI GQSEDCVQMQ QK-------- ---------- ---WND---- ENSTTRP00000010731/1-583 ---------- GPRELCP--- ---------- ---------- ---------- bmy_18388T0/1-602 NQPDNWRHGN GLTEDCVHMQ RK-------- ---------- ---WND---- BACU006030/1-799 QDPDHENYSN NTSEPHMSLA RELSRNIPHA GCAVGLKNEE EGSWADGGNG 751 800 ENSP00000272367/1-589 ---------- ---------- ---RKYIIVN SGMGACSFID TPPCPWILSN ENSBTAP00000005991/1-543 ---------- ---------- ---ISC---- ---------- STLCRWICKK ENSTTRP00000010731/1-583 ---------- ---------- ---LRYLNMN SGVGTCS--- DTLLPSILSN bmy_18388T0/1-602 ---------- ---------- ---MYC---- ---------- TALYHWVCKK BACU006030/1-799 ESAHTCRQGA MSTTGVISPA RSLVKCFFLD SHVDVQKLTM HPLGMRYFPC 801 850 ENSP00000272367/1-589 ----- ENSBTAP00000005991/1-543 ----- ENSTTRP00000010731/1-583 ----- bmy_18388T0/1-602 PVGRM BACU006030/1-799 -----