KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:11 2014 Check: 00 .. Name: ENSBTAP00000006011/1-540 Len: 603 Check: 1198 Weight: 1.00 Name: ENSTTRP00000011434/1-548 Len: 603 Check: 5605 Weight: 1.00 Name: ENSP00000302297/1-548 Len: 603 Check: 6923 Weight: 1.00 Name: bmy_00952T0/1-603 Len: 603 Check: 2438 Weight: 1.00 Name: BACU001990/1-524 Len: 603 Check: 7273 Weight: 1.00 // 1 50 ENSBTAP00000006011/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011434/1-548 ---------- ---------- ---------- ---------- ---------- ENSP00000302297/1-548 ---------- ---------- ---------- ---------- ---------- bmy_00952T0/1-603 GSARGSEQGR GRQPAPEGPR SRSPQQAAAA LAAAAAACGA RAGWPRAVGR BACU001990/1-524 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000006011/1-540 -----MAGLQ ARRVSGLRLL ALSTLGLCLM LQVGAKRPPK TPPCPPSCSC ENSTTRP00000011434/1-548 -----MAGLR ARLGSGLGLL ALSTLGLCLM LQVGAKRPPK TPPCPPSCSC ENSP00000302297/1-548 -----MAGLR ARGGPGPGLL ALSALGFCLM LQVSAKRPPK TPPCPPSCSC bmy_00952T0/1-603 ELAGSMAGLR ARLGSGLGLL ALSTLGLCLM LQVGARRPPK TPPCPPSCSC BACU001990/1-524 -----MAGLR ARLGSGLGLL ALSTLGLCLM LQVGAKRPPK TPPCPPSCSC 101 150 ENSBTAP00000006011/1-540 TRDTAFCVDS KAVPRNLPSE VISLTLVNAA FSEIQDGAFS HLPLLQFLLL ENSTTRP00000011434/1-548 TRDTAFCVDS KAVPRNLPSE VISLXXXXXX XXXXXXXXXX XXXXXXXXLL ENSP00000302297/1-548 TRDTAFCVDS KAVPRNLPSE VISLTLVNAA FSEIQDGAFS HLPLLQFLLL bmy_00952T0/1-603 TRDTAFCVDS KAVPRNLPSE VISLTLVNAA FSEIQDGAFS HLPLLQFLLL BACU001990/1-524 TRDTAFCVDS KAVPRNLPSE VISLTLVNAA FSEIQDGAFS HLPLLQFLLL 151 200 ENSBTAP00000006011/1-540 NSNKFTLIGD NAFTGLSHLQ YLFIENNDIW ALSKFTFRGL KSLTHLSLAN ENSTTRP00000011434/1-548 NSNKFTLIGD NAFTGLSHLQ YLFIENNDIW ALSKFTFRGL KSLTHLSLAN ENSP00000302297/1-548 NSNKFTLIGD NAFTGLSHLQ YLFIENNDIW ALSKFTFRGL KSLTHLSLAN bmy_00952T0/1-603 NSNKFTLIGD NAFTGLSHLQ YLFIENNDIW ALSKFTFRGL KSLTHLSLAN BACU001990/1-524 NSNKFTLIGD NAFTGLSHLQ Y--------- ---------- -----LSLAN 201 250 ENSBTAP00000006011/1-540 NNLQTLPRDI FRPLDILSDL DLRGNSLNCD CKVKWL---- --XSPGMLPV ENSTTRP00000011434/1-548 NNLQTLPRDI FRPLDILSDL DLRGNSLNCD CKVKWLVEWL AHTNTTVAPI ENSP00000302297/1-548 NNLQTLPRDI FRPLDILNDL DLRGNSLNCD CKVKWLVEWL AHTNTTVAPI bmy_00952T0/1-603 NNLQTLPRDI FRPLDILSDL DLRGNSLNCD CKVKWLVEWL AHTNTTVAPI BACU001990/1-524 NNLQTLPRDI FRPLDILSDL DLRGNSLNCD CKVKWLVEWL AHTNTTVAPI 251 300 ENSBTAP00000006011/1-540 PCLA-SRVAL TLLPNLTLTP -PLIPADFVL YQTLSFPAVS AEPFLYSSDL ENSTTRP00000011434/1-548 YCASPPRFQE HKVQDLPLRE FDCITTDFVL YQTLSFPAVS AEPFLYSSDL ENSP00000302297/1-548 YCASPPRFQE HKVQDLPLRE FDCITTDFVL YQTLAFPAVS AEPFLYSSDL bmy_00952T0/1-603 YCASPPRFQE HKVQDLPLRE FDCITTDFVL YQTLSFPAVS AEPFLYSSDL BACU001990/1-524 YCASPPRFQE HKVQDLPLRE FDCITTDFVL YQTLSFPAVS AEPFLYSSDL 301 350 ENSBTAP00000006011/1-540 YLALAQPGAS ACTILKWDYV ERQLRDYDRI PAPSAVHCKP MVVDSQLYVV ENSTTRP00000011434/1-548 YLALAQPGAS VCTILKWDYV ERRLRDYDRI PAPSAVHCKP MVVDSQLYVV ENSP00000302297/1-548 YLALAQPGVS ACTILKWDYV ERQLRDYDRI PAPSAVHCKP MVVDSQLYVV bmy_00952T0/1-603 YLALAQPGAS ACTILKWDYV ERQLRDYDRI PAPSAVHCKP MVVDSQLYVV BACU001990/1-524 YLALAQPGAS ACTILKWDYV ERQLRDYDRI PAPSAVHCKP MVVDSQLYVV 351 400 ENSBTAP00000006011/1-540 VAQLFGGSYI YHWDPNTTRF TKLQDIDPQR VRKPNDLEAF RIDGDWYFAV ENSTTRP00000011434/1-548 VAQLFGGSYI YHWDPNTTRF TKLQDIDPQR VRKPNDLEAF RIDGDWYFAV ENSP00000302297/1-548 VAQLFGGSYI YHWDPNTTRF TRLQDIDPQR VRKPNDLEAF RIDGDWYFAV bmy_00952T0/1-603 VAQLFGGSYI YHWDPNTTRF TKLQDIDPQR VRKPNDLEAF RIDGDWYFAV BACU001990/1-524 VAQLFGGSYI YHWDPNTTRF TKLQDIDPQR VRKPNDLEAF RIDGDWYFAV 401 450 ENSBTAP00000006011/1-540 ADSSKAGATS LYRWHQNGFY SHQALHPWHR DTDLEFVDGE GKPRLIVSSS ENSTTRP00000011434/1-548 ADSSKAGATS LYRWHQNGFY SQQALHAWHR DTDLEFVDGE GKPRLIVSSS ENSP00000302297/1-548 ADSSKAGATS LYRWHQNGFY SHQALHPWHR DTDLEFVDGE GKPRLIVSSS bmy_00952T0/1-603 ADSSKAGATS LYRWHQNGFY SHQALHAWHR DTDLEFVDGE GKPRLIVSSS BACU001990/1-524 ADSSKAGATS LYRWHQNGFY SHQALHAWHR DTDLEFVDGE GKPRLIVSSS 451 500 ENSBTAP00000006011/1-540 SQAPVIYQWS RTQKQFVAQG EVTQVPDAQA VKHFRAGRDS YLCLSRYIGD ENSTTRP00000011434/1-548 SQAPIIYQWS RTQKQFVAQG EVTQVPDAQA VKHFRAGRDS YLCLSRYIGD ENSP00000302297/1-548 SQAPVIYQWS RTQKQFVAQG EVTQVPDAQA VKHFRAGRDS YLCLSRYIGD bmy_00952T0/1-603 SQAPVIYQWS RTQKQFVAQG EVTQVPDAQA VKHFRAGRDS YLCLSRYIGD BACU001990/1-524 SQAPVIYQWS RTQKQFVAQG EVTQVPDAQA VKHFRAGRDS YLCLSRYIGD 501 550 ENSBTAP00000006011/1-540 SKILRWEGAR FSEVQALPSR GSLALQPFLV GGRRYLALGS DFSFTQIYQW ENSTTRP00000011434/1-548 SKILRWEGTR FSEVQALPSR GSLALQPFLV GGRRYLALGS DFSFTQIYQW ENSP00000302297/1-548 SKILRWEGTR FSEVQALPSR GSLALQPFLV GGRRYLALGS DFSFTQIYQW bmy_00952T0/1-603 SKILRWEGTR FSEVQALPSR GSLALQPFLV GGRRYLALGS DFSFTQIYQW BACU001990/1-524 SKILRWEGTR FSEVQALPSR GSLALQPFLV GGRRYLALGS DFSFTQIYQW 551 600 ENSBTAP00000006011/1-540 DEGRQKFVRF QELAVQAPRA FCYMPAGDAQ LLLAPSFKGQ TLVYRHVVVD ENSTTRP00000011434/1-548 DEGRQKFVRF QELAVQAPRA FCYVPAGDAQ LLLAPSFKGQ TLVYRHVVVD ENSP00000302297/1-548 DEGRQKFVRF QELAVQAPRA FCYMPAGDAQ LLLAPSFKGQ TLVYRHIVVD bmy_00952T0/1-603 DEGRQKFVRF QELAVQAPRA FCYMPAGDAQ LLLAPSFKGQ TLVYRHVVVD BACU001990/1-524 DEGRQKFVRF QELAVQAPRA FCYLPAGDAQ LLLAPSFKGQ TLVYRHVVVD 601 650 ENSBTAP00000006011/1-540 LSA ENSTTRP00000011434/1-548 LSA ENSP00000302297/1-548 LSA bmy_00952T0/1-603 LSA BACU001990/1-524 LSA