KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:15 2014 Check: 00 .. Name: ENSTTRP00000004485/1-568 Len: 575 Check: 9998 Weight: 1.00 Name: BACU000734/1-376 Len: 575 Check: 8215 Weight: 1.00 Name: bmy_16638T0/1-563 Len: 575 Check: 4214 Weight: 1.00 Name: ENSP00000156084/1-571 Len: 575 Check: 5975 Weight: 1.00 Name: ENSBTAP00000006035/1-567 Len: 575 Check: 4164 Weight: 1.00 // 1 50 ENSTTRP00000004485/1-568 MTILP-KEPP TPDADPAXX- XXXXXXXXXX XXXXXXXXXX XXXXXXXGSD BACU000734/1-376 ---------- ---------- ---------- ---------- ---------- bmy_16638T0/1-563 MTILPKKKPP PPDADPTNEP PPPPGPLPPA PRRGGGV--- ----GAGGGD ENSP00000156084/1-571 MTILPKKKPP PPDADPANE- PPPPGPMPPA PRRGGGVGVG GGGTGVGGGD ENSBTAP00000006035/1-567 MTILPKKKPP PPDGDPANE- PPPPGPLPPA PRRGGGVGVG GGGTGVGGGD 51 100 ENSTTRP00000004485/1-568 RDRDSG-VGT HPRASPPPQS PLPGPPGALH RWALTVQPGA VAGPRPQQAS BACU000734/1-376 ---------- ---------- ---------- ---------- ---------- bmy_16638T0/1-563 RDRDSGVVGA RPRASPPPQG PLPGPPGALH RWALAVPPGA VAGPRPQQAS ENSP00000156084/1-571 RDRDSGVVGA RPRASPPPQG PLPGPPGALH RWALAVPPGA VAGPRPQQAS ENSBTAP00000006035/1-567 RDRDSGVVGA RPRASPPPQG PLPGPPGALH RWALAVPPGA VAGPRPQQAS 101 150 ENSTTRP00000004485/1-568 PPPCGGPGGP GGGPGDALGA TAT--GVGAA GVVVGVGSAV GVGGCCSGPG BACU000734/1-376 ---------- ---------- ---------- ---------- ---------- bmy_16638T0/1-563 PPPCGGPGGP GGGPGDALGA TATGVGVGAA GVVVGVGSAV GVGGCCSGPG ENSP00000156084/1-571 PPPCGGPGGP GGGPGDALGA AAA--GVGAA GVVVGVGGAV GVGGCCSGPG ENSBTAP00000006035/1-567 PPPCGGPGGP GGGPGDALGT AAT--GVGAA GVVVGVGGAV GVGGCCSGPG 151 200 ENSTTRP00000004485/1-568 HSKRRRQAPG VGAVGGASPE REEVGAGYNS EDEYEAAAAR IEAMDPATVE BACU000734/1-376 ---------- ---------- ---------- ---------- ---MDPATVE bmy_16638T0/1-563 HSKRRRQAPG VGAVGGASPE REEVGAGYNS EDEYEAAAAR IEAMDPATVE ENSP00000156084/1-571 HSKRRRQAPG VGAVGGGSPE REEVGAGYNS EDEYEAAAAR IEAMDPATVE ENSBTAP00000006035/1-567 HSKRRRQAPG VGAVGGGSPE REEVGAGYNS EDEYEAAAAR IEAMDPATVE 201 250 ENSTTRP00000004485/1-568 QQEHWFEKAL RDKKGFIIKQ MKEDGACLFR AVADQVYGDQ DMHEVVRKHC BACU000734/1-376 QQEHWFEKAL RDKKGFIIKQ MKEDGACLFR AVADQVYGDQ DMHEVVRRHC bmy_16638T0/1-563 QQEHWFEKAL RDKKGFIIKQ MKEDGACLFR AVADQVYGDQ DMHEVVRKHC ENSP00000156084/1-571 QQEHWFEKAL RDKKGFIIKQ MKEDGACLFR AVADQVYGDQ DMHEVVRKHC ENSBTAP00000006035/1-567 QQEHWFEKAL RDKKGFIIKQ MKEDGACLFR AVADQVYGDQ DMHEVVRKHC 251 300 ENSTTRP00000004485/1-568 MDYLMKNADY FSNYVTEDFT TYINRKRKNN CHGNHIEMQA MAEMYNRPVE BACU000734/1-376 MDYLMKNADY FSNYVTEDFT TYINRKRKNN CHGNHVEMQA MAEMYNRPVE bmy_16638T0/1-563 MDYLMKNADY FSNYVTEDFT TYINRKRKNN CHGNHIEMQA MAEMYNRPVE ENSP00000156084/1-571 MDYLMKNADY FSNYVTEDFT TYINRKRKNN CHGNHIEMQA MAEMYNRPVE ENSBTAP00000006035/1-567 MDYLMKNADY FSNYVTEDFT TYINRKRKNN CHGNHIEMQA MAEMYNRPVE 301 350 ENSTTRP00000004485/1-568 VYQYSTGTS- VVPINTFHGI HQNEDEPIRV SYHRNIHYNS VVNPNKATIG BACU000734/1-376 VYQYST---- -EPINTFHGL HQNEDAPIRV SYHQNIHYNS VVNPNKATIG bmy_16638T0/1-563 VYQYST---- -EPINTFHGI HQNEDEPIRV SYHRNIHYNS VVNPNKATIG ENSP00000156084/1-571 VYQYSTGTSA VEPINTFHGI HQNEDEPIRV SYHRNIHYNS VVNPNKATIG ENSBTAP00000006035/1-567 VYQYST---- -EPINTFHGI HQNEDEPIRV SYHRNIHYNS VVNPNKATIG 351 400 ENSTTRP00000004485/1-568 VGLGLPSFKP GFAEQSLMKN AIKTSEESWI EQQMLEDKKR ATDWEATNEA BACU000734/1-376 VGLGLPSFKP GSAEQSLMKK AIKTSEESWI EQQMLEDKKR ATDWEATEEA bmy_16638T0/1-563 VGLGLPSFKP GFAEQSLMKN AIKTSEESWI EQQMLEDKKR ATDWEATNEA ENSP00000156084/1-571 VGLGLPSFKP GFAEQSLMKN AIKTSEESWI EQQMLEDKKR ATDWEATNEA ENSBTAP00000006035/1-567 VGLGLPSFKP GFAEQSLMKN AIKTSEESWI EQQMLEDKKR ATDWEATNEA 401 450 ENSTTRP00000004485/1-568 IEEQVARESY LQWLRDQEKQ ARQVRGPSQP RKASATCSSA TAAASSGLEE BACU000734/1-376 IEEQVARESY LQWLSDQQRQ ARQARGPSQP REASATCSSA TAAASSGLEE bmy_16638T0/1-563 IEEQVARESY LQWLRDQEKQ ARQVRGPSQP RKASATCSSA TAAASSGLEE ENSP00000156084/1-571 IEEQVARESY LQWLRDQEKQ ARQVRGPSQP RKASATCSSA TAAASSGLEE ENSBTAP00000006035/1-567 IEEQVARESY LQWLRDQEKQ ARQVRGPSQP RKASATCSSA TAAASSGLEE 451 500 ENSTTRP00000004485/1-568 WTSRSPRQRS SASSPEHPEL HAELGIKPPS PGTVLALAKP PSPCAPGTSS BACU000734/1-376 WTSRSPRQRS SASSPEHPEL HAELGFKPPS PGTVLALAKP PSPCAPGTSS bmy_16638T0/1-563 WTSRSPRQRS SASSPEHPEL HAELGIKPPS PGTVLALAKP PSPCAPGTSS ENSP00000156084/1-571 WTSRSPRQRS SASSPEHPEL HAELGMKPPS PGTVLALAKP PSPCAPGTSS ENSBTAP00000006035/1-567 WTSRSPRQRS SASSPEHPEL HAELGIKPPS PGTVLALAKP PSPCAPGTSS 501 550 ENSTTRP00000004485/1-568 QFSTGADRAT SPLVSLYPTL ECRALIQQMS PSAF-GLNDW DDDEILASVL BACU000734/1-376 QFSTGADRAT SPLVSLYPAL ECRALIQQMS PSAF-GLNDW DDDEILASVL bmy_16638T0/1-563 QFSTGADRAT SPLVSLYPAL ECRALIQQMS PSAFAGLNDW DDDEILASVL ENSP00000156084/1-571 QFSAGADRAT SPLVSLYPAL ECRALIQQMS PSAF-GLNDW DDDEILASVL ENSBTAP00000006035/1-567 QFSTGADRAT SPLVSLYPAL ECRALIQQMS PSAFAGLNDW DDDEILASVL 551 600 ENSTTRP00000004485/1-568 AVSQQEYLDS MKKNKVHRDP PPDKS BACU000734/1-376 AVSQQEYLDS MKKNKVHRDP PPDKS bmy_16638T0/1-563 AVSQQEYLDS MKKNKVHRDP PPDKS ENSP00000156084/1-571 AVSQQEYLDS MKKNKVHRDP PPDKS ENSBTAP00000006035/1-567 AVSQQEYLDS MKKNKVHRDP PPDKS