KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:18 2014 Check: 00 .. Name: ENSBTAP00000006057/1-999 Len: 1231 Check: 8259 Weight: 1.00 Name: ENSP00000374566/1-998 Len: 1231 Check: 305 Weight: 1.00 Name: bmy_19491T0/1-1017 Len: 1231 Check: 426 Weight: 1.00 Name: BACU011483/1-959 Len: 1231 Check: 8096 Weight: 1.00 Name: ENSTTRP00000016600/1-992 Len: 1231 Check: 7091 Weight: 1.00 // 1 50 ENSBTAP00000006057/1-999 MKDSGDSKDQ QLMVALRIRP ISVAELEEGA TLIAHKVDEQ MVVLMDPMED ENSP00000374566/1-998 MKDSGDSKDQ QLMVALRVRP ISVAELEEGA TLIAHKVDEQ MVVLMDPMED bmy_19491T0/1-1017 ---------- ---------- ---------- ---------- MVVLMDPMED BACU011483/1-959 MKDSGDSKDQ QLMVALRVRP ISVAELEEGA TLIAHKVDEQ MVVLMDPMED ENSTTRP00000016600/1-992 MKDSGDSKDQ QLMVALRVRP ISVAELEEGA TLIAHKVDEQ XXXXXXXME- 51 100 ENSBTAP00000006057/1-999 PDDILRAHRS REKSYLFDVA FDFTATQEMV YQATTKSLIE GVISGYNATV ENSP00000374566/1-998 PDDILRAHRS REKSYLFDVA FDFTATQEMV YQATTKSLIE GVISGYNATV bmy_19491T0/1-1017 PDDILRAHRS REKSYLFDVA FDFTATQEMV YQATTKSLIE GVISGYNATV BACU011483/1-959 PDDSLRVHRS REKSYLFDMA FDFTATQEMV YQATTKSLIE GVISGYNATV ENSTTRP00000016600/1-992 PDDI-RAHRS REKSY-FDVA FDFTATQEMV YQATTKSLIE GVISGYNATV 101 150 ENSBTAP00000006057/1-999 FAYGPTG--- ---------- ---------- ---------- ---------- ENSP00000374566/1-998 FAYGPTG--- ---------- ---------- ---------- ---------- bmy_19491T0/1-1017 FAYGPTGPFG PRAPSPAKDA IFSPSPHLPG HLGGSSLEDR PRFARSPCAP BACU011483/1-959 FAYGPTG--- ---------- ---------- ---------- ---------- ENSTTRP00000016600/1-992 FAYGPTG--- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000006057/1-999 ---------- ----CGKTYT MLGTDHEPGI YVRTLNDLFR AIEETSDDME ENSP00000374566/1-998 ---------- ----CGKTYT MLGTDQEPGI YVQTLNDLFR AIEETSNDME bmy_19491T0/1-1017 GRCPAHPPHC SAPGCGKTYT MLGTDHEPGI YVRTLNDLFC AIEETSNDME BACU011483/1-959 ---------- ----CGKTYT MLGTDHEPGI YVRTLNDLFC AIEETSSDME ENSTTRP00000016600/1-992 ---------- ----CGKTYT MLGTDHEPGI YVRTLNDLFC AIEETSNDME 201 250 ENSBTAP00000006057/1-999 YEVSMSYLEI YNEMIRDLLN PSLGYLELRE DSKGVIQVAG ITEVSTINAK ENSP00000374566/1-998 YEVSMSYLEI YNEMIRDLLN PSLGYLELRE DSKGVIQVAG ITEVSTINAK bmy_19491T0/1-1017 YEVSMSYLEI YNEMIRDLLN PALGYLELRE DSKGVIQVAG ITEVSTVNAK BACU011483/1-959 YEVSMSYLE- ---------- ---------- ---------- ---------- ENSTTRP00000016600/1-992 YEVSMSYLEI YNEMIRDLLN PALGYLELRE DSKGVIQVAG ITEVSTVNAK 251 300 ENSBTAP00000006057/1-999 E--------- ---------- ---------- ---------- -------IMQ ENSP00000374566/1-998 E--------- ---------- ---------- ---------- -------IMQ bmy_19491T0/1-1017 EASRVPRSTQ GADPPPPGPL PNLSDAGRGS IPTGPQEWPP SPVPPTQIMQ BACU011483/1-959 ---------- ---------- ---------- ---------- -------IMQ ENSTTRP00000016600/1-992 E--------- ---------- ---------- ---------- -------IMQ 301 350 ENSBTAP00000006057/1-999 LLMRGNRQRT QEPTAANQTS SRSHAVLQVA VRQRSRVRDV LQEVRQGRLF ENSP00000374566/1-998 LLMKGNRQRT QEPTAANQTS SRSHAVLQVT VRQRSRVKNI LQEVRQGRLF bmy_19491T0/1-1017 LLMKGNRQRT QEPTAANQTS SRSHAVLQVA VRQRSRVKSI LQEVRQGRLF BACU011483/1-959 LLMKGNRQRT QEPTAANQTS SRSHAVLQVA VRQRSRVKSV LQEVRQGRLF ENSTTRP00000016600/1-992 LLLKGNRQRT QEPTAANQTS SRSHAVLQVA VRQRSRVKNV LQEVRQGRLF 351 400 ENSBTAP00000006057/1-999 MIDLAGSERA SQTQNRGQRM KEGAHINRSL LALGNCINAL SDKGTNKYVN ENSP00000374566/1-998 MIDLAGSERA SQTQNRGQRM KEGAHINRSL LALGNCINAL SDKGSNKYIN bmy_19491T0/1-1017 MIDLAGSERA SQ-------- ---------- ---------- ---------- BACU011483/1-959 MIDLAGSERA SQTQNRGQRM KEGAHINRSL LALGNCINAL SDKNSNKYIN ENSTTRP00000016600/1-992 MIDLAGSERA SQTQNRGQRM KEGAHINRSL LALGNCINAL SDKSSNKYIN 401 450 ENSBTAP00000006057/1-999 YRDSKLTRLL KDSLGGNSRT VMIAHISPAS SAFEESRNTL TYASRAKSIK ENSP00000374566/1-998 YRDSKLTRLL KDSLGGNSRT VMIAHISPAS SAFEESRNTL TYAGRAKNIK bmy_19491T0/1-1017 ---------- ---------- ---------- ---------- ---------- BACU011483/1-959 YRDSKLTRLL KDSLGGNSRT VMIAHISPAS SAFEESRNTL TYAGRAKNIK ENSTTRP00000016600/1-992 YRDSKLTRLL KDSLGGNSRT VMIAHISPAS SAFEESRNTL TYAGRAKNIK 451 500 ENSBTAP00000006057/1-999 TRVKRNLLSV SYHIAQYTNI IADLRGEIQR LKRKIEERGG RSLDRAQLGR ENSP00000374566/1-998 TRVKQNLLNV SYHIAQYTSI IADLRGEIQR LKRKIDEQTG RGQARGRQDR bmy_19491T0/1-1017 --VKQNLLNV SYHIAQYTSI IADLRGEIQR LKCKIDEQGG RGQAHGRLER BACU011483/1-959 TRVKQNLLNV SYHIAQYTSI IADLRGEIQR LKCKIDEQGG RDQAHGRLER ENSTTRP00000016600/1-992 TRVKQNLLNV SYHIAQYTSI IADLRGEIER LKRKMDKQGG RGQAHGRLER 501 550 ENSBTAP00000006057/1-999 GDIRHIQAEV QLHSGQGEQA AMEHLREQLI STFQEQMDTR RRLLELENRG ENSP00000374566/1-998 GDIRHIQAEV QLHSGQGEKA GMGQLREQLA SAFQEQMDVR RRLLELENRA bmy_19491T0/1-1017 GDICHIQAKV QLHSEKSEQA EMGQLREQLI SAFQAQMDVR RHLLELENHA BACU011483/1-959 GDICHIQAKV QLHSEKGERA EMGPLREQLI SAFQEQMDVR RHLLELENHA ENSTTRP00000016600/1-992 GDICHIQAKV QLHSEKGEQA EMGQLREQLI SAFQEQMDVR RHLLELENHA 551 600 ENSBTAP00000006057/1-999 MELETDTSHH LLTIASWKHE KSRRALKWRE ERRKESFTKD DTRKDSDTGD ENSP00000374566/1-998 MEVQIDTSRH LLTIAGWKHE KSRRALKWRE EQRKECYAKD DSEKDSDTGD bmy_19491T0/1-1017 MEVQIDTSRH LLTIAGWEHE KSRRALKWRE ERRKESYTKD DSEKDSDAGD BACU011483/1-959 MEVQIDTSRH LLTIAGWEHE KSRRALKWRE EQRKESYTKD DSEKDSDTGD ENSTTRP00000016600/1-992 MEVQIDTSRH LLTIAGWEHE KSRRALKWRE EQRKESYTKD DSEKDSDTGD 601 650 ENSBTAP00000006057/1-999 NQPDIEEPAE VVSARESIAT LMTEQKKLRK QKLALEQRCR ELRARGRRLE ENSP00000374566/1-998 DQPDILEPPE VAAARESIAA LVDEQKQLRK QKLALEQRCR ELRARGRRLE bmy_19491T0/1-1017 DQPDILEPPE VASARESIAA LMGEQKKLRE QKVS------ ---------- BACU011483/1-959 DQPDILEPPE VASARESITA LMGEQKKLRK HKLTLEQRCR ELRARGRRLE ENSTTRP00000016600/1-992 DQPDILEPPE VACARESIAA LTGEQKKLRK QKLTLEQRCR ELRARGRRLE 651 700 ENSBTAP00000006057/1-999 ETLPRRVSSE QQREALGLLC RVHELELEKA EMQSQALLRD GALRHRREAL ENSP00000374566/1-998 ETLPRRIGSE EQREVLSLLC RVHELEVENT EMQSHALLRD GALRHRHEAV bmy_19491T0/1-1017 ---------- ---------- ---------- -----GVWGS G--------- BACU011483/1-959 ETLPRRIGSE EQREVLSLLC RVHELEVENT EMQSHALLRD GALRHRREAL ENSTTRP00000016600/1-992 ETLPRRIGSE EQREVLSLLC RVHELEVENT EMQSHALLRD GALRHRREAL 701 750 ENSBTAP00000006057/1-999 RRLEQRLSLC EEIIRAQRQL IQDCNLAVPQ HLKELYEVYL REHEEGNLER ENSP00000374566/1-998 RRLEQHRSLC DEIIQGQRQI IDDYNLAVPQ RLEELYEVYL RELEEGSLEQ bmy_19491T0/1-1017 ---------- ---------- --DYNLAVPQ HLEELYEVYL REQEEGSLER BACU011483/1-959 RRLEQHRSLC DEIIQGQRQI IDDYNLAVPQ HLEELYEVYL REQEEGSLER ENSTTRP00000016600/1-992 RRLEQHRSLC DEIIQGQRQI IDDYSLAVPQ RLQELYDVYV RAQDEGSLER 751 800 ENSBTAP00000006057/1-999 ATMMDRLASR ALQDSALPKI SPPGTVPTPE ESDLESVKMP NSESPHQHGS ENSP00000374566/1-998 ATIMDQVASR ALQDSSLPKI TPAGTSLTP- DSDLESVKTL SSDAQHLQNS bmy_19491T0/1-1017 ATIMDRVASR ALQDSSLPKI RRAGTVLTP- ESDPESVKTL SSEAQLLQSS BACU011483/1-959 ATIMDRVASR ALQDSSLPKI SRAGTLLTP- ESDPESVKTL SSEAQLLQSS ENSTTRP00000016600/1-992 AAIMDRVASG AL-DSSLPKI SRAGTLPTP- ESDPESVKTL SSEAQLLQGS 801 850 ENSBTAP00000006057/1-999 FLPLLGTESE ---------- ---------- ---------- --ANH----- ENSP00000374566/1-998 ALPPLSTESE ---------- ---------- ---------- --GHH----- bmy_19491T0/1-1017 FLPPISTESQ PRAQGQFRGL AGEELLCAHP TPHPDWQPGD AGGEHWAPLA BACU011483/1-959 FLPPISTESE ---------- ---------- ---------- --ANH----- ENSTTRP00000016600/1-992 FLPPISTESE ---------- ---------- ---------- --ANH----- 851 900 ENSBTAP00000006057/1-999 ----PFKTSS RAWQAKG--F CLPTPPPIRG GNLVT----- -----QEATT ENSP00000374566/1-998 ----VFKAGT GAWQAKS--S SVPTPPPIQL GSLVT----- -----QEAPA bmy_19491T0/1-1017 RWAPLLQVGV PGWTPSGWDG AFPKQPPGDI GSLLCPVASL PNQFVSQAPT BACU011483/1-959 ----VLKASS GAWQVKS--S SVPTPPPIPI GSLVT----- -----QEAPT ENSTTRP00000016600/1-992 ----VSKASS GAWQVKS--S SVPTPPPIQI GSLVT----- -----QEAPT 901 950 ENSBTAP00000006057/1-999 QVGL---NGQ INSSPESIEN LSEIPLSHKG RKETAADTKS IAGKAARHHL ENSP00000374566/1-998 QDSLGSW--- INSSPDSSEN LSEIPLSHKE RKEILTGTKC IWVKAARRRS bmy_19491T0/1-1017 QDSLGSLSGR INSSPDSSEN LSEIPLSCKE RKEILTGTKC ISVKAARRRS BACU011483/1-959 QDSLGSLSGR INSSPDSSEN LSEIPLSCKE RKEILTGTKC ISVKAARRRS ENSTTRP00000016600/1-992 QDSLGSLSGR INSSPDSSEN LSEIPLSCKE RKEILTDTKC ISVKAARRRS 951 1000 ENSBTAP00000006057/1-999 QALGAKGRQL LAPTIKQSSL SLHLKGQTDD VRPPGPLACK RPPSPTLQHT ENSP00000374566/1-998 RALGTEGRHL LAPATERSSL SLHSLSEGDD ARPPGPLACK RPPSPTLQHA bmy_19491T0/1-1017 RALGAEGRHL LAPSMERSSL SLHSLSEADD VRPPGLLACK RPPSPMLQHA BACU011483/1-959 RALGAEGRHL LAPRMERSSL SLHSLSEAGE ARPPGLLACK RPPSPTLQHA ENSTTRP00000016600/1-992 RALGAEGRHL LAPSMERSSL SLHSLSEADD ARPPGLLACK RPPSPMLQHA 1001 1050 ENSBTAP00000006057/1-999 ASEDSLSSST GEAPSRAVEC HGNGPCPPLQ GQEKSPRNKR EESLEAK-RK ENSP00000374566/1-998 ASEDNLSSST GEAPSRAVGH HGDGPRPWLR GQKKSLGKKR EESLEAKRRK bmy_19491T0/1-1017 ASEDNLSSST GEAPSRAVKH RGDGPGPWLR GQKKSQGKKR EELLEAKRRK BACU011483/1-959 ASEDNLSSST GEAPSRAVEH RGDGPGPRLR GQKKSQGKKR EELLEAKRRK ENSTTRP00000016600/1-992 ASEDNLSSST GEAPSRAVEH HGDGPGPWLR GQKKSLGKKR EELLEAKRRK 1051 1100 ENSBTAP00000006057/1-999 RRSQAFEVTG QG-------- ---------- ---------- ---------- ENSP00000374566/1-998 RRSRSFEVTG QG-------- ---------- ---------- ---------- bmy_19491T0/1-1017 RRSQSFEVTG QGVSPGARIG GSGPPPCWWG SEGWIAPAAP GYLTPSCAPP BACU011483/1-959 RRSQSFEVTG QG-------- ---------- ---------- ---------- ENSTTRP00000016600/1-992 RRSQSFEVTG QG-------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000006057/1-999 ---------- ---------- ---------- ----LSRPKM HVAGPRPVEN ENSP00000374566/1-998 ---------- ---------- ---------- ----LSHPKT HLLGPHQAER bmy_19491T0/1-1017 SMPYPPSWHS SWGRPLYQIP TQLPPHLTAL QPTQLSRPKT HLLGPRPVQS BACU011483/1-959 ---------- ---------- ---------- ----LSHPKT HVLGPRPVQS ENSTTRP00000016600/1-992 ---------- ---------- ---------- ----LSRPKT HLLGPHPAQS 1151 1200 ENSBTAP00000006057/1-999 HTEEQRMPVV GHLTPTIRPL GKTTLPMAKV KLPPCQSLGP EDTTPVAAPS ENSP00000374566/1-998 -ISDHRMPVC RHPAPGIRHL GKVTLPLAKV KLPPSQNTGP GDSSPLAVPP bmy_19491T0/1-1017 -ISDHRVRVC GHPAPGTRHA GKVTLPVAKV KLPPSQNTGP GDSSPLTVPS BACU011483/1-959 -ISDHRVRVC GHPAPGTRHL GKVTLPMAKV KLPPSQNTGP GDSSLLAVPA ENSTTRP00000016600/1-992 -ISDHRVQVC GHPASGTRHL GKVSLPMAKV KLPPSQNPGP GDSSPLAVPS 1201 1250 ENSBTAP00000006057/1-999 NPGDVSERVA RMPRLPYGTS TQNKNGHFGH N ENSP00000374566/1-998 NPGGGSRRAT RGPRLPHGTS THGKDGCSRH N bmy_19491T0/1-1017 NPAGVSQRAT REPRPPHGTS THGKDGRFRH N BACU011483/1-959 NPAGVSQRAT RGPRPPHGTS THGKDGRFRH N ENSTTRP00000016600/1-992 NPAGVSQRAT RGPRLPHG-- ---KDGRFQH N