KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:21 2014 Check: 00 .. Name: ENSP00000311496/1-808 Len: 1017 Check: 6204 Weight: 1.00 Name: ENSBTAP00000006082/1-843 Len: 1017 Check: 2248 Weight: 1.00 Name: ENSTTRP00000011982/1-813 Len: 1017 Check: 4664 Weight: 1.00 Name: bmy_15041T0/1-613 Len: 1017 Check: 2668 Weight: 1.00 Name: BACU006142/1-1012 Len: 1017 Check: 1353 Weight: 1.00 // 1 50 ENSP00000311496/1-808 MLHDARDRQK FFSDVQYLRD MQHKVDSEYQ ACLRRQEYRR DPNEKKRDQF ENSBTAP00000006082/1-843 MLHEAKDRQK FVSDVQYLRD MQHKVDSEYQ ACLRRQEYKR DPNEKKRDQF ENSTTRP00000011982/1-813 MFHEAKDRQK FVSDVQYLRD IQHKTDSEYQ ACLRRQEYRR DPNGKKRDQF bmy_15041T0/1-613 ---------- ---------- ---------- ---------- ---------- BACU006142/1-1012 MLHEAKDRQR FVSDVQYLRD MQHKADSEYQ ACLRRQEYRR DPNGKKRDQF 51 100 ENSP00000311496/1-808 WGQETSFERS RFSSRSSSKQ SSSEEDALTE PRSSIKISAF KCDSKLPAID ENSBTAP00000006082/1-843 WGQETNFERS RFSSGSSSKQ SSADEDAQAE PRLSATSSAC KTDSRLPAID ENSTTRP00000011982/1-813 WGQETNFERS QFSSGSSSKQ SSGEKHALAE PGLPAKSSAR KSDSRLPAID bmy_15041T0/1-613 ---------- --------MQ S--------- P--------- ---------- BACU006142/1-1012 WGQETNFERS RFSSGSSSKQ SSGEEEALAE PRLSAKSSAC KSDSRLPAID 101 150 ENSP00000311496/1-808 QTSVKQKHKS TMTVRKAEKV DPSEPSPADQ APM------- ---------- ENSBTAP00000006082/1-843 QTSVKQKHKS TMTPKKLEKA GPSKPPPAAE APQ------- ---------- ENSTTRP00000011982/1-813 QTSVKHKHKS TTTPKKSENG GPSKPSPAAQ ASQ------- ---------- bmy_15041T0/1-613 ---------- ---------- ---------- ---------- ---------- BACU006142/1-1012 QTSVKQKHKS TMTPKKSEKA GPSKPSPGDS SERPLFCVEY SPYCCVFAFS 151 200 ENSP00000311496/1-808 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006082/1-843 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011982/1-813 ---------- ---------- ---------- ---------- ---------- bmy_15041T0/1-613 ---------- ---------- ---------- ---------- ---------- BACU006142/1-1012 PVLQPNTNFC SLLLPLLPPA SPAAQDSSPP LPPASSPSSP GPAPESPAAL 201 250 ENSP00000311496/1-808 ---------- ------VLLR KRKPNLRRFT VSPES----- -------HSP ENSBTAP00000006082/1-843 ---------- ------ILSR KRRPNLGRLT VSPET----- -------QSP ENSTTRP00000011982/1-813 ---------- ------ILSS KRRPN---LI VSPEM----- -------QSP bmy_15041T0/1-613 ---------- ---------- ---------- ---------- ---------- BACU006142/1-1012 CYFPISCPSP AETPVLCLPG PRRPGRIYLV CSPGITDFIK EEEAKPDSQP 251 300 ENSP00000311496/1-808 R--------- -------ASG DRSRQKQQWP AKVP------ VPRGA----- ENSBTAP00000006082/1-843 R--------- -------LSG DRSRQKLQRP GKVP------ ALRGI----- ENSTTRP00000011982/1-813 R--------- -------ASG DRSREKLQLP GKAP------ ALRGV----- bmy_15041T0/1-613 R--------- -------ASG DRSRQKLQLP GKAP------ ALRGV----- BACU006142/1-1012 RNAEPESVWG QKQTETAAAG EGASPQGSRA CLLPYGTLTF GVRGLSSVST 301 350 ENSP00000311496/1-808 ---------- --DQVVQQEG LM--CNTKLK RPNQERRNLV PSSQPMT--E ENSBTAP00000006082/1-843 ---------- --DPIVQQEH PAWASDTKLK RPTQERRNLV PSSQVIMVME ENSTTRP00000011982/1-813 ---------- --DPIVQQEG PMWASDTKLK RPTRERRNLV PSSQLITVME bmy_15041T0/1-613 ---------- --DPIVQQEG PMWASDTKLK RPTRERRNLV PSSQLITVME BACU006142/1-1012 YSKMISLSFL NTDPIVQQEG PMWASDTKLK RPTRERRNLV PSSQLITVME 351 400 ENSP00000311496/1-808 NA-PDRAKKG DPSAPSQSEL HPALSQAFQG KNSPQVLSEF SGPPLTPTTV ENSBTAP00000006082/1-843 NSRTERARKG DTGTHSQSTP HSALPQAFQG THSPQELDES LGPPLVASTL ENSTTRP00000011982/1-813 NT-PEKAKKK GLSALSQKEP HPALSQAFQG MNSPQELTES LGPPRIATTL bmy_15041T0/1-613 NT-PERAKKR DLSTLSRKEP HPALSQAFQG TNSPQELTES LGPPLVTTTL BACU006142/1-1012 NT-PERAKKR DLSALSQKEP HPALSQAFQG TNSPQELTES LGPPRVTTTL 401 450 ENSP00000311496/1-808 GGPRKASFRF RDEDFYSILS LNSRRESDDT EEETQSEECL WV-GVRSPCS ENSBTAP00000006082/1-843 GGPRRTTFRF RDKDFYSILS SNPGGEHDDT EEETHMEEEL LMAGMHPPRS ENSTTRP00000011982/1-813 EGPRRMMFRF RDEDFYSVLS SNSGEENDDT EEETHVEEEL LLAGMHPXXX bmy_15041T0/1-613 GGPRRMMFRF RDEDFYSVLS SNSGGENDDT EEETHVEEEL LLAGMHPSRS BACU006142/1-1012 GGPRRMMFRF RDEDFYSVLS SNSGGENGDT EEETHVEEEL LLAGMHPPRS 451 500 ENSP00000311496/1-808 PSHHKRSRFG GTSTPQAKNK NFEENAENCR GHSSRRSEPS HGSLRISNAM ENSBTAP00000006082/1-843 PSSHKRSRFL GTLATQAKNK NSEENPAHCR ANSIRRSEAS HGSLRISNAM ENSTTRP00000011982/1-813 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15041T0/1-613 PSNHKRSRFL GTLATRAKNK SFEENPANCR ANSVRRSESS HGSLRISSAM BACU006142/1-1012 PSNHKRSRFL GTLATRAKNK SFEENPANCR ANSVRRSESS HGSLRISSAM 501 550 ENSP00000311496/1-808 EPATERPSAG QRLSQDPGLP DRESATEKDR GGSENAKKSP LSWDTKS--- ENSBTAP00000006082/1-843 EPVTEQSSVG QRMSQDPGLS DGGSIKGKDS SDCESEKKAS HSWDTQS--- ENSTTRP00000011982/1-813 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXH bmy_15041T0/1-613 QLVTEQPSIW QGIFQDPGRP DGGS-KEKDS SDSENE-KTF HSWDTKS--- BACU006142/1-1012 QLVPEQPSIW QGIFQDPGRP DGGSAKEKDS SDSENE-KTF HSWDTKS--- 551 600 ENSP00000311496/1-808 EPRQEVGVNA ENVWSDCISV EHRPGTHDSE GYWKDYLNSS QNSLDYFISG ENSBTAP00000006082/1-843 EPSLEDDINA ENESRDGISM EERPGTHAYE RDCQAYLSES SNPLDSFLAG ENSTTRP00000011982/1-813 KSSLEDDLNA ENVFCDCTSM EDRPGTHDYE RDWQAHLSDS HNHLGCFLAG bmy_15041T0/1-613 KSSLEDDLNA ENVFRDGTSM EDRPGTHDYE RDWQAHLSDS NNPLGCFLAG BACU006142/1-1012 ESSLEDDLNA ENVFRDVTSV EDRPGTHDYE RDWQAHLSDS NNPLGCFLAG 601 650 ENSP00000311496/1-808 RPISPRSSVN SSYNPPASFM HSALRDDIPV DLSMSSTSVH SSDSEGNSGF ENSBTAP00000006082/1-843 RPMAPRSSVN LSHNMPGSVT HFTLRDDTLA DLPPSSTLVP SSDSEGSSRF ENSTTRP00000011982/1-813 RPTAPRSSMN SSYNTPGSFM HSALRDDTPI DLSTSSTLAP SSDSEGSSRF bmy_15041T0/1-613 RPRAPRSSMN SSYNTPGSFV HSALRDDTPI DLSTSSTLAP SSNSGGSSRF BACU006142/1-1012 RPTAPRSSMN SSCNTPGSFV HSALRDDTPI DLSTSSTLAP STDSEGSSRF 651 700 ENSP00000311496/1-808 HVCQPLSPIR NRTPFASAEN HNYFPVNSAH EFAVREAEDT TLTSQPQGAP ENSBTAP00000006082/1-843 SGHQPLSPIR NRNLLAGAEN CSYLPVDSAH DLDVRGAEDV TSTSPAQEAP ENSTTRP00000011982/1-813 NVRQPLSPIR NRNLFASAEN HSYFPVNSVH EFDVRGAEHI TLTSQSQEAP bmy_15041T0/1-613 NVRQPLSPIR NRNLFASAEN HSYFPVNSVH EFDVRGAEDI TLTSQSQEAP BACU006142/1-1012 NVRQPLSPIR NRNLFASAEN HSYFPVNSVH EFDVRGAEDI TLTSQSQEAP 701 750 ENSP00000311496/1-808 LYT-DLLLNP QGNLSLVDSS SSSPSRMNSE GHLHVSGSLQ ENTPFTFFAV ENSBTAP00000006082/1-843 LYTDGLLPNP QGNLSLMESS SSSPSGMNVQ GHLHVARSLQ ENRPFTFFAG ENSTTRP00000011982/1-813 LHTEDLLLNP QSSLSLVESS SSSPSETNLQ GHLHVPRSLQ ENIPFNFFAV bmy_15041T0/1-613 LHTEDLLLNP QSSLSLVESS SSSPSGTNLQ GHLHVPRSLQ ENIPFTFFAV BACU006142/1-1012 LHTEDLLLNP QSSLSLVESS SSSPSGTNLQ GHLHEPRSLQ ENIPFTFFAV 751 800 ENSP00000311496/1-808 SHFPNQNDNG SRMAASGFTD EKETSKIKAD PEKLKKLQES LLEEDSEEEG ENSBTAP00000006082/1-843 SEFPNQNENG SGMEFSGFTK AKGAPKMKTD PEKLKKIQES LLEEDSEEEG ENSTTRP00000011982/1-813 SEFPNQNDNG SRMEVPGVTD EKEATKIKAD PEKLKKLQQS LLEEDSEDEG bmy_15041T0/1-613 SEFPNQNDSG SRMEVPGVTD EKEATKTKAD PEKLKKLQES LLEEDSEEEG BACU006142/1-1012 SEFPNQNDNG SRMEVPGVTD EKEATKTKAD PEKLKKLQES LLEEDSEEEG 801 850 ENSP00000311496/1-808 DLCRICQIAG GSPSNPLLEP CGCVGSLQFV HQECLKKWLK VKITSGADLG ENSBTAP00000006082/1-843 DLCRICQIAG GSPTNPLLEP CGCVGSLQFV HQECLKKWLK VKITSGADLG ENSTTRP00000011982/1-813 DLCRICQIAG GSPANPLVEP CGCVGSLRSV HPECLKTWLK VKITSGAD-G bmy_15041T0/1-613 DLCRICQIAG GSPASPLVEP CGCVGSLRFV HPECLKKWLK VKITSGGKGG BACU006142/1-1012 DLCRICQIAG GSPASPLVEP CGCVGSLRFV HPECLKKWLK VKITSGADLG 851 900 ENSP00000311496/1-808 AVKTCEMCKQ GLLVDLGDFN MIEFYQKHQQ SQAQNELMNS GLYLVLLLHL ENSBTAP00000006082/1-843 AVKTCEMCKQ SLLVNLDDFN VTEFYQKHQQ SRVQNELMNS GLYLVLLLHL ENSTTRP00000011982/1-813 AVR-CEMCKQ -LLVDLDDFN VAEFYQKHQQ SRAQHELMNS GLCLVLLLRL bmy_15041T0/1-613 T--------- ---------- -------THV PRTYHEAPPC G--------- BACU006142/1-1012 TVKTCEMCKQ SLLVDLDDFN VTEFYQKHQQ SRAQHELMNS GLCLVLLLRL 901 950 ENSP00000311496/1-808 YEQRFAELMR LNHNQVERER LSRNYP---- ------QPR- ---------- ENSBTAP00000006082/1-843 YEQRFAELMR LNHDRATRER LSRNYP---- ------QPRL EENESSQRAC ENSTTRP00000011982/1-813 YEQRFAELMR LNHGQDARER LSRNYP---- ------QPR- ---------- bmy_15041T0/1-613 --------TR SLDNSSRQQS LGGNGALAH- ------GPR- ---------- BACU006142/1-1012 YEQRFAELMR LNHNQDARER HTQEGNNQYN PLDENLGPKA LTLENILVKT 951 1000 ENSP00000311496/1-808 ---------- -------TEE ---------- ---------- ----NENSEL ENSBTAP00000006082/1-843 WIQKLNKENK CRERAKKPGQ ---------- ---------- ----LSPKQA ENSTTRP00000011982/1-813 ---------- -------PEE ---------- ---------- ----NESSEW bmy_15041T0/1-613 ---------- ------RTGA ---------- ---------- ---------- BACU006142/1-1012 ILEKHAYAGH FSIQGLHPGA PVLGFLLALG FVSTTLSIPP NEMTRDPEFL 1001 1050 ENSP00000311496/1-808 GDGNEGSISQ SQVV--- ENSBTAP00000006082/1-843 YYPIENLTQE NVLN--- ENSTTRP00000011982/1-813 RDGNDSSICE SNSPVV- bmy_15041T0/1-613 -----GLSCL QIMGGK- BACU006142/1-1012 SLPAHSSSPK PLKCLIC