KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:23 2014 Check: 00 .. Name: ENSTTRP00000003080/1-1112 Len: 1230 Check: 3730 Weight: 1.00 Name: bmy_02518T0/1-696 Len: 1230 Check: 5414 Weight: 1.00 Name: BACU004417/1-303 Len: 1230 Check: 7385 Weight: 1.00 Name: ENSP00000394757/1-1163 Len: 1230 Check: 4103 Weight: 1.00 Name: ENSBTAP00000006103/1-1108 Len: 1230 Check: 486 Weight: 1.00 // 1 50 ENSTTRP00000003080/1-1112 MDRPREAETE LRRGPSPPRA SRSPEADGDK ALSHSCCICG KSFPFQSSLS bmy_02518T0/1-696 ---------- -----MSARL SCGRSVAG-- ---HGVALC- ---------- BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 MDRNREAEME LRRGPSPTRA GRGHEVDGDK ATCHTCCICG KSFPFQSSLS ENSBTAP00000006103/1-1108 MERSREAEAE LRGGRSPSRA SRSPEADGDR ALSHSCCICG KTFPFQSSLS 51 100 ENSTTRP00000003080/1-1112 QHMRKHTGEK PYKCPYCDHR ASQKGNLKIH IRGHRTGTLI QGHEPE---- bmy_02518T0/1-696 ---------- ---------- -----RLAVV EAGHPDGPL- ---------- BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 QHMRKHTGEK PYKCPYCDHR ASQKGNLKIH IRSHRTGTLI QGHEPEAGEA ENSBTAP00000006103/1-1108 QHMRKHTGEK PYKCPYCDHR AAQKGNLKIH IRGHRAGTLT QGREPEA--- 101 150 ENSTTRP00000003080/1-1112 --GETRVSEG LD--CSSPES TSACNRIL-- ---------- -----APNDS bmy_02518T0/1-696 ---------- ---------- --AVSRPL-- ---------- ---------- BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 PLGEMRASEG LDACASPTKS ASACNRLLNG ASQADGARVL NGASQADSGR ENSBTAP00000006103/1-1108 --AETRVSEG LGGCTSPTKS TSACNRIL-- ---------- NGATQADTGK 151 200 ENSTTRP00000003080/1-1112 ARLLRSKMEA EGACAADESK AAGAGQCFCK SKFERRKDLE QHVHQAHKPF bmy_02518T0/1-696 ---------- ---------- ------AWCS TRL------- ---------- BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 VLLRSSKKGA EGSACAPGEA KAAVQCSFCK SQFERKKDLE LHVHQAHKPF ENSBTAP00000006103/1-1108 ILLRSTRKEA EGVAAG---- ----QCAFCK SRFERKKDLA QHVQQAHKPF 201 250 ENSTTRP00000003080/1-1112 KCRLCSYVTL REESLLSHIE KDHITAQGP- RGDAFAENGK PELPPGEFPC bmy_02518T0/1-696 ---------- ---------- ---------- ---------- ---------- BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 KCRLCSYATL REESLLSHIE RDHITAQGPG SGEACVENGK PELSPGEFPC ENSBTAP00000006103/1-1108 TCRLCSYATL REEALLSHVE KDHIAAQGP- RGDAFAENGK PELPPGEFPC 251 300 ENSTTRP00000003080/1-1112 EVCGQAFSQT WFLKAHMKKH RGSFDHGCHI CGRRFKEPWF LKNHMKAHGP bmy_02518T0/1-696 ---------- ---------- ---------- ---------- ---------- BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 EVCGQAFSQT WFLKAHMKKH RGSFDHGCHI CGRRFKEPWF LKNHMKAHGP ENSBTAP00000006103/1-1108 EVCGQAFSQT WFLKAHMKKH RGSFDHGCHI CGRRFKEPWF LKNHMKAHGP 301 350 ENSTTRP00000003080/1-1112 KAGSKNRPRG ELDPIATINN VVQEEGIVAG LSLYEVCTKC GNLFTNLDSL bmy_02518T0/1-696 ---------- ---------- ---------- ---------- ---------- BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 KTGSKNRPKS ELDPIATINN VVQEEVIVAG LSLYEVCAKC GNLFTNLDSL ENSBTAP00000006103/1-1108 KAGSKNRPRS ELEPVATIND VVQEEVIVAG LSLYEVCTKC GNLFTNLDSL 351 400 ENSTTRP00000003080/1-1112 NAHNAIHRRV EAGRPRAPVG EGPAPGPADS QQLFLQCLNL RP-AAGAPAR bmy_02518T0/1-696 ---------- ---------- ---------- ---------- ---AACPPPQ BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 NAHNAIHRRV EASRTRAPAE EG-AEGPSDT KQFFLQCLNL RPSAAGDSCP ENSBTAP00000006103/1-1108 NAHNAIHRRV EAGQPRAAVG EGSAPGPADS QQFFLQCLNL RP-AAGTPTR 401 450 ENSTTRP00000003080/1-1112 G-QAGRRVAE LDPVNSYQAW QLATRGRVAE PAEYLKYAAW DEALAGDVAF bmy_02518T0/1-696 G--------- ---------- ---------- ---------- ---TAGGIPS BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 GTQAGRRVAE LDPVNSYQAW QLATRGKVAE PAEYLKYGAW DEALAGDVAF ENSBTAP00000006103/1-1108 G-QTGRRVAE LDPVNSYQAW QLATRGKVAE PAEYLKYAAW DEALAGDVAF 451 500 ENSTTRP00000003080/1-1112 DKERREFILV SQEKRKREPE -PGAQGPPRK RAGAPGDPAP --GPDPRPAA bmy_02518T0/1-696 HGER------ ---------- ---------- ---------- --PFDPRDAT BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 DKDRREYVLV SQEKRKREQD APAAQGPPRK RASGPGDPAP AGHLDPRSAA ENSBTAP00000006103/1-1108 DKERREFILV SQEKRKREPE -PGAQGPPRK RAGAPGDPAP -GPPDPRPAA 501 550 ENSTTRP00000003080/1-1112 RPSRRAAAPA GHGKSSECFE CGKIFRTYHQ MVLHSRVHRR ARRDRDRDGP bmy_02518T0/1-696 GLFLREP--- ---------- SNKALQLKRH VFLXCRV--- ---------- BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 RPNRRAAATT GQGKSSECFE CGKIFRTYHQ MVLHSRVHRR ARRERDSD-- ENSBTAP00000006103/1-1108 RPSRRAAVPA GHGKSSECFE CGKIFRTYHQ MVLHSRVHRR ARRDRERDGP 551 600 ENSTTRP00000003080/1-1112 GDRAPRARCG SLSEGDSASQ PSSPGSACAA ADSPGSGLAD EAAYESGEEG bmy_02518T0/1-696 ---------- ---------- ---------- ---------- ---------- BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 GDRAARARCG SLSEGDSASQ PSSPGSACAA ADSPGSGLAD EAAEDSGEEG ENSBTAP00000006103/1-1108 GDRAPRARCG SLSEGDSASQ PSSPGSGCAA ADSPGSGLAD EAADESGEEA 601 650 ENSTTRP00000003080/1-1112 AAHPAPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02518T0/1-696 ------GTKP HRCCFPEEVA STALSNGDQS HTLGNNPSGR AAREPGAGIA BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 APEPAPGGQP RRCCFSEEVT STELSSGDQS HKMGDNASER DTGESKAGIA ENSBTAP00000006103/1-1108 PAHPTAGAKP HRCCFPEDVS LTVLSNGDQS HTLGNSPSGR AAGEPGAGIA 651 700 ENSTTRP00000003080/1-1112 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02518T0/1-696 ASVSVLESSS RDTSKRAEQP RFSVDLKMPA FHPKQEGPGS RDTADLPSRP BACU004417/1-303 ---------- ---------- -------MPA FHPKQEGPGS RDAADLPSPP ENSP00000394757/1-1163 ASVSILENSS RETSRRQEQH RFSMDLKMPA FHPKQEVPVP GDGVEFPSST ENSBTAP00000006103/1-1108 ACVSILESSS RDAPRRPEPP RCSVDLKTPA CGPQQEGPGP RDAADLPPRP 701 750 ENSTTRP00000003080/1-1112 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02518T0/1-696 PQTADLQLPS ESQATHPQEK LSDLHNTEHS GGGKRVPAPD LIPLDLSERS BACU004417/1-303 PQTADLQLPS ESQAAHPQEK LSDLHNTEHS GGGKRAPAPD LIPLDLSERS ENSP00000394757/1-1163 G--------A EGQTGHPAEK LSDLHNKEHS GGGKRALAPD LMPLDLSARS ENSBTAP00000006103/1-1108 AQAAGLQPPS ESQAAYPRER PPDLHTKEHP TAGKQAPAPD LVPLDLSERS 751 800 ENSTTRP00000003080/1-1112 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02518T0/1-696 TRADPSHKEL ASSLQAALAV HPCPYCSHKT YYPEVLWMHK RIWHRVSCHS BACU004417/1-303 TRADPSRKEL ASSLPAALAV HPCPYCSHKT YYPEVLWMHK RIWHKVSCHS ENSP00000394757/1-1163 TRDDPSNKET ASSLQAALVV HPCPYCSHKT YYPEVLWMHK RIWHRVSCNS ENSBTAP00000006103/1-1108 SRDDPGRREP ASSLQAALAV HPCPYCGHKT YYPEVLWMHK RVWHRVSGQA 801 850 ENSTTRP00000003080/1-1112 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02518T0/1-696 VAPQWIQPNG YKSIRNNLVF LTRSGRTGPP PALGGKECQP LPISRFTRTQ BACU004417/1-303 VAPQWMQPNG YKSIRNNLVF LTRSGRTGPP PALGGKECQP LPISRFTRT- ENSP00000394757/1-1163 VAPPWIQPNG YKSIRSNLVF LSRSGRTGPP PALGGKECQP LLLARFTRTQ ENSBTAP00000006103/1-1108 VAPQWTQPNG YKSIRSNLVF LARSGRTGPP PALGGKECQP LPIARFTRTQ 851 900 ENSTTRP00000003080/1-1112 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02518T0/1-696 VPGGAPGPKG SPSPLGMPTK AAGLPRSKES HPGGPCALWA AGPDGHRQTK BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 VPGGMPGSKS GSSPLGVVTK AASMPKNKES HSGGPCALWA PGPDGYRQTK ENSBTAP00000006103/1-1108 VPGGAPGPKG SPSPLGVPTK AAGLPRSKEG HPGAPCTLWT AGPDGTRQTR 901 950 ENSTTRP00000003080/1-1112 X--------X XXXXPPSKPR QEPAREPEPW GGSGDFSRTA TRRPPVIARG bmy_02518T0/1-696 P----GPEQP GAPPPPSKPK QEAGPRAGPA AGSGGFSRSA TPTPTVITRA BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 PCHGQEPHGA ATQGPLAKPR QEASSKPVPA PGGGGFSRSA TPTPTVIARA ENSBTAP00000006103/1-1108 P-------GP SPEQPPPKPK QEASPRPGAT GGSGGFSRSA TPTPTVITRA 951 1000 ENSTTRP00000003080/1-1112 APEPPASNRQ -DKYGLRPAG AGLGPPNKHI TENPPKAKFS PQPQGQAHGK bmy_02518T0/1-696 APQPPANSRQ GDKYGFPPAG AGLGPPNKHS ALDPPKAKFS PQPQGQPHGK BACU004417/1-303 ---------- ---------- ---------- ---------- ---------- ENSP00000394757/1-1163 GAQPSANSKP VEKFGVPPAG AGFAPTNKHS APDSLKAKFS AQPQGPPPAK ENSBTAP00000006103/1-1108 GPQAPASGRQ ---------G AGLGPPSKHS APDPPKAKFS PQPQGQPHGK 1001 1050 ENSTTRP00000003080/1-1112 GDGA--PLPP REPPAK---- --------IG SRGTATWQAQ -------PVL bmy_02518T0/1-696 GDGG-PPLPP REPPAK---- --------VG SRGTAASQAQ -------PVL BACU004417/1-303 ---------- ---------- ---------- -------QAQ -------PVL ENSP00000394757/1-1163 GEGGAPPLPP REPPSKAAQE LRTLATCAAG SRGDAALQAQ PGVAGAPPVL ENSBTAP00000006103/1-1108 GDGA-TPLPP REPPSK---- --------AG SRGPAVPQGP -------PAP 1051 1100 ENSTTRP00000003080/1-1112 HNIKQE-ASE GPEKRLDIVS ICKTHIPKDF ASLYQSWGGN DPALEHRGTL bmy_02518T0/1-696 HSIKQEPASE GPEKRLDILN IFKTYIPKDF ASLYQSWGGN GPALEHRGTL BACU004417/1-303 HTIKQEPASE GPEKRLDILN IFKTYIPKDF ASLYQSWGGN GPALEHR--- ENSP00000394757/1-1163 HSIKQEPVAE GHEKRLDILN IFKTYIPKDF ATLYQGWGVS GPGLEHRGTL ENSBTAP00000006103/1-1108 HPVKQEPASE GPEKRLDLLS IFKTYIPKDL ASLYQSWGAS SPVLERRGTL 1101 1150 ENSTTRP00000003080/1-1112 RTPAHQGDLV CVECGKCFHQ SSHLRAHTRA HTVLFESNGL RGAEAHATSA bmy_02518T0/1-696 RTPAHQGDFV CVECGKCFHQ PSHLRAHTRA HTVLFESNGL RGAEAHATSA BACU004417/1-303 ---------- ---------- ---------- --VLFESNGL RGAEAHATSA ENSP00000394757/1-1163 RTQARPGEFV CIECGKSFHQ PGHLRAHMRA HSVVFESDGP RGSEVHTTSA ENSBTAP00000006103/1-1108 RTQAHQGDFI CVECGKSFHQ PSHLRAHMRA HTVLFESNGL RGADAHTTSA 1151 1200 ENSTTRP00000003080/1-1112 DAPKQ----- -G-------- ---------- ---------- -RDHSNADTV bmy_02518T0/1-696 DAPKQVGLPT HGGETILMQI LSKQCLSERE PRDTLSPSPV PRDSVRSSLV BACU004417/1-303 DAPKQVGLPT HG--CVGFHV VAG------- ---------- -KRGVTMAIT ENSP00000394757/1-1163 DAPKQ----- -G-------- ---------- ---------- -RDHSNTGTV ENSBTAP00000006103/1-1108 DTPKQ----- -G-------- ---------- ---------- -RDHSNADAV 1201 1250 ENSTTRP00000003080/1-1112 QT-------- -VPLRK---- --------GT bmy_02518T0/1-696 DVPTVTLTAP WKNSRPDTSD PAAAGRG-GS BACU004417/1-303 RVPRGVLPAV YVALRCCGSE PRAAGQSVGA ENSP00000394757/1-1163 QT-------- -VPLRK---- --------GT ENSBTAP00000006103/1-1108 QT-------- -VPLRK---- --------GT