KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:25 2014 Check: 00 .. Name: ENSTTRP00000013954/1-1233 Len: 1321 Check: 8780 Weight: 1.00 Name: ENSP00000334952/1-1321 Len: 1321 Check: 7056 Weight: 1.00 Name: ENSBTAP00000006107/1-1235 Len: 1321 Check: 5756 Weight: 1.00 Name: BACU012538/1-1124 Len: 1321 Check: 6515 Weight: 1.00 Name: bmy_13242T0/1-1171 Len: 1321 Check: 7756 Weight: 1.00 // 1 50 ENSTTRP00000013954/1-1233 ---------- ---------- ---------- ---------- ---------- ENSP00000334952/1-1321 MEPPGRRRGR AQPPLLLPLS LLALLALLGG GGGGGAAALP AGCKHDGRPR ENSBTAP00000006107/1-1235 ---------- ---------- ---------- ---------- ---------- BACU012538/1-1124 ---------- ---------- ---------- ---------- ---------- bmy_13242T0/1-1171 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013954/1-1233 ---------- ---------- ---------- ------ILSN NKISELKNGS ENSP00000334952/1-1321 GAGRAAGAAE GKVVCSSLEL AQVLPPDTLP NRTVTLILSN NKISELKNGS ENSBTAP00000006107/1-1235 ---------- ---------- ---------- ------ILSN NKISELKNGS BACU012538/1-1124 ---------- ---------- ---------- ---------- ---------- bmy_13242T0/1-1171 ---------- ---------- ---------- --MEQRILSN NKISELKNGS 101 150 ENSTTRP00000013954/1-1233 FSGLSLLER- -LLRNLISSI DPGAFWGLSS LKRLDLTNNR IGCLNADIFR ENSP00000334952/1-1321 FSGLSLLERL DLRNNLISSI DPGAFWGLSS LKRLDLTNNR IGCLNADIFR ENSBTAP00000006107/1-1235 FSGLSLLERL DLRNNLISSI DPGAFWGLSS LKRLDLTNNR IGCLNADIFR BACU012538/1-1124 ---------- ---------- ---------- ---------- ---------- bmy_13242T0/1-1171 FSGLSLLERL DLRNNLISSI DPGAFWGLSS LKRLDLTNNR IGCLNADIFR 151 200 ENSTTRP00000013954/1-1233 GLTNLVRLXX XXXXXXXXXX XXXXXXXXXX XXEFQTEYLL CDCNILWMHR ENSP00000334952/1-1321 GLTNLVRLNL SGNLFSSLSQ GTFDYLASLR SLEFQTEYLL CDCNILWMHR ENSBTAP00000006107/1-1235 GLTNLVRLNL SGNLFSSLSQ GTFDYLGSLR SLEFQTEYLL CDCNILWMHR BACU012538/1-1124 ---------- ---------- ---------- ---------- -------MHR bmy_13242T0/1-1171 GLTNLVRLNL SGNLFSSLSQ GTFDYLGSLR SLEFQTEYLL CDCNILWMHR 201 250 ENSTTRP00000013954/1-1233 WVKERNITVR DTRCVYPKSL QAQPVTGVKQ ELLTCDPPLE LPSFYMTPSH ENSP00000334952/1-1321 WVKEKNITVR DTRCVYPKSL QAQPVTGVKQ ELLTCDPPLE LPSFYMTPSH ENSBTAP00000006107/1-1235 WVKERNITVR DTRCVYPKSL QAQPVTGVKQ ELLTCDPPLE LPSFYMTPSH BACU012538/1-1124 WVKERNITVR DTRCVYPKSL QAQPVTGVKQ ELLTCDPPLE LPSFYMTPSH bmy_13242T0/1-1171 WVKERNITVR DTRCVYPKSL QAQPVTGVKQ ELLTCDPPLE LPSFYMTPSH 251 300 ENSTTRP00000013954/1-1233 RQVVFEGDSL PFQCMASYID QDMQVLWYQD GRIVETDESQ GIFVEKNMIH ENSP00000334952/1-1321 RQVVFEGDSL PFQCMASYID QDMQVLWYQD GRIVETDESQ GIFVEKNMIH ENSBTAP00000006107/1-1235 RQVVFEGDSL PFQCMASYID QDMQVLWYQD GRIVETDESQ GIFVEKNMIH BACU012538/1-1124 RQVVFEGDSL PFQCMASYID QDMQVLWYQD GRIVETDESQ GIFVEKNMIH bmy_13242T0/1-1171 RQVVFEGDSL PFQCMASYID QDMQVLWYQD GRIVETDESQ GIFVEKNMIH 301 350 ENSTTRP00000013954/1-1233 NCSLIASALT ISNIQAGSTG NWGCHVQSKR GNNTRTVDIV VLESSAQYCP ENSP00000334952/1-1321 NCSLIASALT ISNIQAGSTG NWGCHVQTKR GNNTRTVDIV VLESSAQYCP ENSBTAP00000006107/1-1235 NCSLIASALT ISNIQAGSTG NWGCHVQTKR GNNTRTVDIV VLESSAQYCP BACU012538/1-1124 NCSLIASALT ISNIQAGSTG NWGCHVQSKR GNNTRTVDIV VLESSAQYCP bmy_13242T0/1-1171 NCSLIASALT ISNIQAGSTG NWGCHVQSKR GNNTRTVDIV VLESSAQYCP 351 400 ENSTTRP00000013954/1-1233 PERVVNNKGD FRWPRTLAGI TAHLQCTRNT HSGGIYPGNA QDERKAWRRC ENSP00000334952/1-1321 PERVVNNKGD FRWPRTLAGI TAYLQCTRNT HGSGIYPGNP QDERKAWRRC ENSBTAP00000006107/1-1235 PERVVNNKGD FRWPRTLAGI TAYLQCTRNA HGSGIYPGNA QDERKAWRRC BACU012538/1-1124 PERVVNNKGD FRWPRTLAGI TAHLQCTRNT HSGGIYPGNA QDERKAWRRC bmy_13242T0/1-1171 PERVVNNKGD FRWPRTLAGI TAHLQCTRNT HSGGIYPGNA QDERKAWRRC 401 450 ENSTTRP00000013954/1-1233 DRGGFWADDD YSRCQYANDV TRVLYMFNQM PLNLTNAVAT ARQLLAYTVE ENSP00000334952/1-1321 DRGGFWADDD YSRCQYANDV TRVLYMFNQM PLNLTNAVAT ARQLLAYTVE ENSBTAP00000006107/1-1235 DRGGFWADDD YSRCQYANDV TRVLYMFNQM PLNLTNAVAT ARQLLAYTVE BACU012538/1-1124 DRGGFWADDD YSRCQYANDV TRVLYMFNQM PLNLTNALAT ARQLLAYTVE bmy_13242T0/1-1171 DRGGFWADDD YSRCQYANDV TRVLYMFNQM PLNLTNAVAT ARQLLAYTVE 451 500 ENSTTRP00000013954/1-1233 AANFSDKMDV IFVAEMIEKF GRFTKEEKSK ELGDVMVDIA SNIMLADDRV ENSP00000334952/1-1321 AANFSDKMDV IFVAEMIEKF GRFTKEEKSK ELGDVMVDIA SNIMLADERV ENSBTAP00000006107/1-1235 AANFSDKMDV IFVAEMIEKF GRFTKEEKSK ELGDVMVDIA SNIMLADERV BACU012538/1-1124 AANFSDKMDV IFVAEMIEKF GRFTKEEKSK ELGDVMVDIA SNIMLADERV bmy_13242T0/1-1171 AANFSDKMDV IFVAEMIEKF GRFTKEEKSK ELGDVMVDIA SNIMLADERV 501 550 ENSTTRP00000013954/1-1233 LGLAQREAKA CSRIVQCLQR IATYRLANGA HVYSTYSPNI ALEAYVIKAA ENSP00000334952/1-1321 LWLAQREAKA CSRIVQCLQR IATYRLAGGA HVYSTYSPNI ALEAYVIKST ENSBTAP00000006107/1-1235 LGLAQREAKA CSRIVQCLQR IATYRLANGA HVYSTYSPNI ALEAYVIKAT BACU012538/1-1124 LGLAQREAKA CSRIVQCLQR VATYRLATGA HVYSTYSPNI ALEAYVIKAA bmy_13242T0/1-1171 LGLAQREAKA CSRIVQCLQR VATYRLANGA HVYST----- ---------- 551 600 ENSTTRP00000013954/1-1233 GFTGMTCTVF QKVAATDRTG FSDYGRRDPD GNLDKQLSFK CNVSNTFSSL ENSP00000334952/1-1321 GFTGMTCTVF QKVAASDRTG LSDYGRRDPE GNLDKQLSFK CNVSNTFSSL ENSBTAP00000006107/1-1235 GFTGMTCTVF QKVAATDRTG LSDYGRRDLD GNLDKQLSFK CNVSNTFSSL BACU012538/1-1124 GFTGMTCTVF QKVAATDRTG FSDYGRRDPD GNLDKQLSFK CNVSNTFSSL bmy_13242T0/1-1171 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000013954/1-1233 ALKNTIVEAS IQLPPSLFSP KQKREVRPSD DSLYKLQLIA FRNGKLFPAT ENSP00000334952/1-1321 ALKNTIVEAS IQLPPSLFSP KQKRELRPTD DSLYKLQLIA FRNGKLFPAT ENSBTAP00000006107/1-1235 ALKNTIVEAS IQLPPSLFSP KQKREVRPSD DSLYKLQLIA FRNGKLFPAT BACU012538/1-1124 ALKNTIVEAS IQLPPSLFSP KQKREVRPSD DSLYKLQLIA FRNGKLFPAT bmy_13242T0/1-1171 ---NTIVEAS IQLPPSLFSP KQKREVRPSD DSLYKLQLIA FRNGKLFPAT 651 700 ENSTTRP00000013954/1-1233 GNSTNLADDG KRRTVVTPVI LTKIDGVNID THHIPVNVTL RRIANGADPV ENSP00000334952/1-1321 GNSTNLADDG KRRTVVTPVI LTKIDGVNVD THHIPVNVTL RRIAHGADAV ENSBTAP00000006107/1-1235 GNSTNLADDG KRRTVVTPVI LTKIDGVNID THHIPVNVTL RRIAHGADAV BACU012538/1-1124 GNSTNLADDG KRRTVVTPVI LTKIDGVNID THHIPVNVTL RRIAHGADPV bmy_13242T0/1-1171 GNSTNLADDG KRRTVVTPVI LTKIDGVNID THHIPVNVTL RRIAHGADAV 701 750 ENSTTRP00000013954/1-1233 AAQWDFDLLN GQGGWTSDGC RILCSDENIT TIQCYSLSNY AVLMXXXXXX ENSP00000334952/1-1321 AARWDFDLLN GQGGWKSDGC HILYSDENIT TIQCYSLSNY AVLMDLTGSE ENSBTAP00000006107/1-1235 AAQWDFDLLN GQGGWKSDGC HILYSDENIT TIQCYSLSNY AVLMDLTGSE BACU012538/1-1124 AAQWDFDLLN GQGGWTSDGC RILCSDENIT AIQCYSLSNY AVLMDLTGSE bmy_13242T0/1-1171 AAQWDFDLLN GQGGWTSDGC RILCSDENIT AIQCYSLSNY AVLMDLTGSE 751 800 ENSTTRP00000013954/1-1233 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLIRI SLKGWHMLVN ENSP00000334952/1-1321 LYTQAASLLH PVVYTTAIIL LLCLLAVIVS YIYHHSLIRI SLKSWHMLVN ENSBTAP00000006107/1-1235 FYTQAAHLLH PVVYTTAVIL LLCLLAVIVS YIYHHSLIRI SLKGWHMLVN BACU012538/1-1124 LYTQAANLLH PVVYTTAVIL LFCLLVVIVS YIYHHSLIRI SLKGWHMLVN bmy_13242T0/1-1171 LYTQAANLLH PVVYTTAVIL LFCLLVVIVS YIYHHSLIRI SLKGWHMLVN 801 850 ENSTTRP00000013954/1-1233 LCFHIFLTCV IFVGGVTQTR NASVCQAVGI ILHYSTLATV LWVGVTARNI ENSP00000334952/1-1321 LCFHIFLTCV VFVGGITQTR NASICQAVGI ILHYSTLATV LWVGVTARNI ENSBTAP00000006107/1-1235 LCFHIFLTCV VFVGGISQTR NASVCQAVGI ILHYSTLATV LWVGVTARNI BACU012538/1-1124 LCFHIFLTCV IFVGGVTQTR NASVCQAVGI ILHYSTLATV LWVGVTARNI bmy_13242T0/1-1171 LCFHIFLTCV IFVGGVTQTR NASVCQAVGI ILHYSTLATV LWVGVTARNI 851 900 ENSTTRP00000013954/1-1233 YKQVTRKAKR CQDPDELPPP PRPMLRFYLI GGGIPVIVCG ITAAANIKNY ENSP00000334952/1-1321 YKQVTKKAKR CQDPDEPPPP PRPMLRFYLI GGGIPIIVCG ITAAANIKNY ENSBTAP00000006107/1-1235 YKQVTKKAKR CQDPDELPPP PRPMLRFYLI GGGIPVIVCG ITAAANIKNY BACU012538/1-1124 YKQVTRKAKR CQDPDELPPP PRPMLRFYLI GGGIPVIVCG ITAAANIKNY bmy_13242T0/1-1171 YKQVTRKAKR CQDPDELPPP PRPMLRFYLI GGGIPVIVCG ITAAANIKNY 901 950 ENSTTRP00000013954/1-1233 GSRPNAPYCW MAWEPSLGAF YGPASFITFV NCMYFLSIFI QLKRHPERKY ENSP00000334952/1-1321 GSRPNAPYCW MAWEPSLGAF YGPASFITFV NCMYFLSIFI QLKRHPERKY ENSBTAP00000006107/1-1235 GSRPNAPYCW MAWEPSLGAF YGPASFITFV NCMYFLSIFI QLKRHPERKY BACU012538/1-1124 GSRPNAPYCW MAWEPSLGAF YGPASFITFV NCMYFLSIFI QLKRHPERKY bmy_13242T0/1-1171 GSRPNAPYCW MAWEPSLGAF YGPASFITFV NCMYFLSIFI QLKRHPERKY 951 1000 ENSTTRP00000013954/1-1233 ELKEPSEEQQ RLAANENGEV NHQDSLSLSL ISTSALENEH TFHSQLLGAS ENSP00000334952/1-1321 ELKEPTEEQQ RLAANENGEI NHQDSMSLSL ISTSALENEH TFHSQLLGAS ENSBTAP00000006107/1-1235 ELKEPTEEQQ RLAANENGEV NHQDSMSQSL ISTSALGNEH TFHAQLLGAS BACU012538/1-1124 ELKEPSEEQQ RLAANENGEV NHQDSLSLSL ISTSALENEH TFHSQLLGAS bmy_13242T0/1-1171 ELKEPSEEQQ RLAANENGEV NHQDSLSLSL ISTSALENEH TFHSQLLGAS 1001 1050 ENSTTRP00000013954/1-1233 LTLLLYVALW MFGALAVSLY YPLDLVFSFF FGATCLSLSA FIVVHHCVNR ENSP00000334952/1-1321 LTLLLYVALW MFGALAVSLY YPLDLVFSFV FGATSLSFSA FFVVHHCVNR ENSBTAP00000006107/1-1235 LTLLLYVGLW MFGALAVSLY YPLDLVFSFF FGATCLSLSA FIVVHHCVNR BACU012538/1-1124 LTLLLYVALW MFGALAVSLY YPLDLVFSFF FGATCLSLSA FIVVHHCVNR bmy_13242T0/1-1171 LTLLLYVALW MFGALAVSLY YPLDLVFSFF FGATCLSLSA FIVVHHCVNR 1051 1100 ENSTTRP00000013954/1-1233 EDVRLAWIMT CCPGRSAYSV QVNVQPPSSS GPSGEAPKCT NSSTESSCTN ENSP00000334952/1-1321 EDVRLAWIMT CCPGRSSYSV QVNVQPPNSN GTNGEAPKCP NSSAESSCTN ENSBTAP00000006107/1-1235 EDVRLAWIMT CCPGRSTYSV QVNVQPPSSS GPSGEAPKCT NSSAESSCTN BACU012538/1-1124 EDVRLAWIMT CCPGRSAYLV QVNVQPPSSS GPSGEAPKCT NSSTESSCTN bmy_13242T0/1-1171 EDVRLAWIMT CCPGRSAYSV QVNVQPPSSS GPSGEAPKCT NSSTESSCTN 1101 1150 ENSTTRP00000013954/1-1233 KSASSFKNSS QGCKLTNLQA AAAQCHTNSL PLNATPQLDN SLTEHSMDND ENSP00000334952/1-1321 KSASSFKNSS QGCKLTNLQA AAAQCHANSL PLNSTPQLDN SLTEHSMDND ENSBTAP00000006107/1-1235 KSASSFKNSS QGCKLTNLQA AAAQCHTNSL PLNATPQLDN SLTEHSMDND BACU012538/1-1124 KSASSFKNSS QGCKLTNLQA AAAQCHSNSL PLNATPQLDN SLTEHSMDND bmy_13242T0/1-1171 KSASSFKNSS QGCKLTNLQA AAAQCHSNSL PLNATPQLDN SLTEHSMDND 1151 1200 ENSTTRP00000013954/1-1233 IKMHVAPLEV PFRTNVHPSR HHKNRSKGHR ASRLTVLREY AYDVPTSVEG ENSP00000334952/1-1321 IKMHVAPLEV QFRTNVHSSR HHKNRSKGHR ASRLTVLREY AYDVPTSVEG ENSBTAP00000006107/1-1235 IKMHVAPLEV PFRTNMHPSR HHKNRSKGHR ASRLTVLREY AYDVPTSVEG BACU012538/1-1124 IKMHVAPLEV PFRTNVHPSR HHKNRSKGYR ASRLTVLREY AYDVPTSVEG bmy_13242T0/1-1171 IKMHVAPLEV PFRTNVHPSR HHKNRSKGHR ASRLTVLREY AYDVPTSVEG 1201 1250 ENSTTRP00000013954/1-1233 SVQNGLSKSR PGSNEGHSRS RRAYLAYRER QYNPPQQDSS DACSTLPKSS ENSP00000334952/1-1321 SVQNGLPKSR LGNNEGHSRS RRAYLAYRER QYNPPQQDSS DACSTLPKSS ENSBTAP00000006107/1-1235 SVQNGLPKSR LGSNEGHSRS RRAYLAYRER QYNPPQQDSS DACSTLPKSS BACU012538/1-1124 SVQNGLSKSR PGSNEGHSRS RRAYLAYRER QYNPPQQDSS DACSTLPKSS bmy_13242T0/1-1171 SVQNGLSKSR PGSNEGHSRS RRAYLAYRER QYNPPQQDSS DACSTLPKSS 1251 1300 ENSTTRP00000013954/1-1233 RNFEKPVSTS SKKDALRKPT VVELESQQKS YGLNLAIQNG PIKSTGQDGP ENSP00000334952/1-1321 RNFEKPVSTT SKKDALRKPA VVELENQQKS YGLNLAIQNG PIKSNGQEGP ENSBTAP00000006107/1-1235 RNFEKPVSTS SKKDAVRKPT VVELESQQKS YGLNLAIQNG PIKSSGQEGP BACU012538/1-1124 RNFEKPVSTS SKKDALRKPT VVELESQQKS YGLNLAIQNG PIKSTGQDGP bmy_13242T0/1-1171 RNFEKPVSTS SKKDALRKPT VVELESQQKS YGLNLAIQNG PIKSTGQDGP 1301 1350 ENSTTRP00000013954/1-1233 LLGMDSTGNV RTGLWKHETT V ENSP00000334952/1-1321 LLGTDSTGNV RTGLWKHETT V ENSBTAP00000006107/1-1235 LLGTDSTGNV RTGLWKHETT V BACU012538/1-1124 LLGMDSTGNV RTGLWKHETT V bmy_13242T0/1-1171 LLGMDSTGNV RTGLWKHETT V