KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:27 2014 Check: 00 .. Name: ENSTTRP00000004900/1-604 Len: 726 Check: 430 Weight: 1.00 Name: ENSBTAP00000006129/1-583 Len: 726 Check: 9617 Weight: 1.00 Name: ENSP00000384136/1-604 Len: 726 Check: 8737 Weight: 1.00 Name: bmy_18577T0/1-471 Len: 726 Check: 7335 Weight: 1.00 Name: BACU004580/1-726 Len: 726 Check: 5905 Weight: 1.00 // 1 50 ENSTTRP00000004900/1-604 MPKPINVRVT TMDAELEFAI QPNTTGKQLF DQXXXXXXXX XXXXXXXXXX ENSBTAP00000006129/1-583 LPMQINVRVT TMDAELEFAI QPNTTGKQLF DQVVKTVGLR EVWFFGLQYV ENSP00000384136/1-604 MPKPINVRVT TMDAELEFAI QPNTTGKQLF DQVVKTVGLR EVWFFGLQYV bmy_18577T0/1-471 MPKPINVRVT TMDAELEFAI QPNTTGKQLF DQVVKTVGLR EVWFFGLQYV BACU004580/1-726 MPKPINVRVT TMDAELEFAI QPNTTGKQLF DQVVKTVGLR EVWFFGLQYV 51 100 ENSTTRP00000004900/1-604 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000006129/1-583 DSKGYSTWLK LNKKVTQQDV KKENPLQFKF RAKFFPEDVS EELIQEITQR ENSP00000384136/1-604 DSKGYSTWLK LNKKVTQQDV KKENPLQFKF RAKFFPEDVS EELIQEITQR bmy_18577T0/1-471 DSKGYSTWLK LNKKVTQQDV KKENPLQFKF RAKFFPEDVS EELIQEITQR BACU004580/1-726 DSKGYSTWLK LNKKVTQQDV KKENPLQFKF RAKFFPEDVS EELIQEITQR 101 150 ENSTTRP00000004900/1-604 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000006129/1-583 LFFLQVKEAI LNDEIYCPPE TAVLLASYAV QAKYGDYNKE IHKPGYLAND ENSP00000384136/1-604 LFFLQVKEAI LNDEIYCPPE TAVLLASYAV QAKYGDYNKE IHKPGYLAND bmy_18577T0/1-471 LFFLQVKEAI LNDEIYCPPE TAVLLASYAV QAKYGDFNKE IHKPGYLAND BACU004580/1-726 LFFLQVKEAI LNDEIYCPPE TAVLLASYAV QAKYGDFNKE IHKPGYLAND 151 200 ENSTTRP00000004900/1-604 XXXXXXVLEQ HKLTKEQWEE RIQNWHEEHR GMLREDSMME YLKIAQDLEM ENSBTAP00000006129/1-583 RLLPQRVLEQ HKLTKEQWEE RIQNWHEEHR GMLREDSMME YLKIAQDLEM ENSP00000384136/1-604 RLLPQRVLEQ HKLTKEQWEE RIQNWHEEHR GMLREDSMME YLKIAQDLEM bmy_18577T0/1-471 RLLPQRVLEQ HKLTKEQWEE RIQNWHEEHR GMLREDSMME YLKIAQDLEM BACU004580/1-726 RLLPQRVLEQ HKLTKEQWEE RIQNWHEEHR GMLREDSMME YLKIAQDLEM 201 250 ENSTTRP00000004900/1-604 YGVNYFEIKN KKGTELWLGV DALGLNIYEH DDKLTPKIGF PWSEIRNISF ENSBTAP00000006129/1-583 YGVNYFEIKN KKGTELWLGV DALGLNIYEH DDKLTPKIGF PWSEIRNISF ENSP00000384136/1-604 YGVNYFEIKN KKGTELWLGV DALGLNIYEH DDKLTPKIGF PWSEIRNISF bmy_18577T0/1-471 YGVNYFEIKN KKGTELWLGV DALGLNIYEH DDKLTPKIGF PWSEIRNISF BACU004580/1-726 YGVNYFEIKN KKGTELWLGV DALGLNIYEH DDKLTPKIGF PWSEIRNISF 251 300 ENSTTRP00000004900/1-604 NDKKFVIKPI DKKAPDFVFY APRLRINKRI LALCMGNHEL YMRRRKPDTI ENSBTAP00000006129/1-583 NDKKFVIKPI DKKAPDFVFY APRLRINKRI LALCMGNHEL YMRRRKPDTI ENSP00000384136/1-604 NDKKFVIKPI DKKAPDFVFY APRLRINKRI LALCMGNHEL YMRRRKPDTI bmy_18577T0/1-471 NDKKFVIKPI DKKAPDFVFY APRLRINKRI LALCMGNHEL YMRRRKPDTI BACU004580/1-726 NDKKFVIKPI DKKAPDFVFY APRLRINKRI LALCMGNHEL YMRRRKPDTI 301 350 ENSTTRP00000004900/1-604 EVQQMKAQAR EEKHQKQLER AQLENEKKKR EIAEKEKERI EREKEELMER ENSBTAP00000006129/1-583 EVQQMKAQAR EEKHQKQLER AQLENEKKKR EIAEKEKERI EREKEELMER ENSP00000384136/1-604 EVQQMKAQAR EEKHQKQLER AQLENEKKKR EIAEKEKERI EREKEELMER bmy_18577T0/1-471 EVQQMKAQAR EEKHQKQLER AQLENEKKKR EIAEKEKERI EREKEELMER BACU004580/1-726 EVQQMKAQAR EEKHQKQLER AQLENEKKKR EIAEKEKERI EREKEELMER 351 400 ENSTTRP00000004900/1-604 LRQIEEQTLK AQKELEEQTR KALELDQERK RAKEEAERLE KERQAAEEAK ENSBTAP00000006129/1-583 LRQIEEQTMK AQKELEEQTR KALELDQERK RAKEEAERLE KERQAAEEAK ENSP00000384136/1-604 LKQIEEQTIK AQKELEEQTR KALELDQERK RAKEEAERLE KERRAAEEAK bmy_18577T0/1-471 LRQIEEQTMK AQKELEEQTR KALELDQERK RAKEEAERLE KERRAAEEAK BACU004580/1-726 LRQIEEQTMK AQKELEEQTR KALELDQERK RAKEEAERLE KERRAAEEAK 401 450 ENSTTRP00000004900/1-604 SAIAKQAADQ MKNQEQLAAE LAEFTAKIAL LEEAKKKKEE EATEWQHKAF ENSBTAP00000006129/1-583 SALAKQAADQ MKNQEQLAAE LAEFTAKIAL LEEAKKKKEE EATEWQHKAF ENSP00000384136/1-604 SAIAKQAADQ MKNQEQLAAE LAEFTAKIAL LEEAKKKKEE EATEWQHKAF bmy_18577T0/1-471 SAIAKQAADQ MKNQEQL--- ---------- ---------- ---------- BACU004580/1-726 SAIAKQAADQ MKNQEQLAAE LAEFTAKIAL LEEAKKKKEE EATEWQHKAF 451 500 ENSTTRP00000004900/1-604 AAQEDLEKTK EELKTVMSAP PPPPPPPVIP PTENEHDEHD ENNAEASAEL ENSBTAP00000006129/1-583 AAQEDLEKTK EELKTVMSAP PPPPPPPVIP PTENEHDEHD ENNAEASAEL ENSP00000384136/1-604 AAQEDLEKTK EELKTVMSAP PPPPPPPVIP PTENEHDEHD ENNAEASAEL bmy_18577T0/1-471 ---------- ---------- ---------- ---------- ---------- BACU004580/1-726 AAQEDLEKTK EELKTVMSAP PPPPPPPVIP PTENEHDEHD ENNAEASAEL 501 550 ENSTTRP00000004900/1-604 SNDGVMNHRS EEERITEMQK NERVKKQLQA LSSELAQARD ETKKTQNDVL ENSBTAP00000006129/1-583 SNDGVMNHRS EEERVTETQK NERVKKQLQA LSSELAQARD ETKKTQNDVL ENSP00000384136/1-604 SNEGVMNHRS EEERVTETQK NERVKKQLQA LSSELAQARD ETKKTQNDVL bmy_18577T0/1-471 ---------- ---------- ---------A LSSELAQARD ETKKTQNDVL BACU004580/1-726 SNDGVTNHRS EEERVTETQK NERVKKQLQA LSSELAQARD ETKKTQNDVL 551 600 ENSTTRP00000004900/1-604 HAENVKAGRD KYKTLRQIRQ GNTKQRIDEF EAMWGPKLYA LFQMRSCQSS ENSBTAP00000006129/1-583 HAENVKAGRD KYKTLRQIRQ GNTKQRIDEF EAM------- ---------- ENSP00000384136/1-604 HAENVKAGRD KYKTLRQIRQ GNTKQRIDEF EAMWGPKLYA LFQMRSCQSS bmy_18577T0/1-471 HAENVKAGRD KYKTLRQIRQ GNTKQRIDEF EAM------- ---------- BACU004580/1-726 HAENVKAGRD KYKTLRQIRQ GNTKQRIDEF EAMSVLRQLQ MSEADTGMHP 601 650 ENSTTRP00000004900/1-604 IKQM------ ---------- ---------- ---------- ---------- ENSBTAP00000006129/1-583 ---------- ---------- ---------- ---------- ---------- ENSP00000384136/1-604 IKQM------ ---------- ---------- ---------- ---------- bmy_18577T0/1-471 ---------- ---------- ---------- ---------- ---------- BACU004580/1-726 TPQPCSSPLD CTRLCHKGYV GTQTVCIVPD AFLPKQYKAN VTVRKKVPSL 651 700 ENSTTRP00000004900/1-604 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006129/1-583 ---------- ---------- ---------- ---------- ---------- ENSP00000384136/1-604 ---------- ---------- ---------- ---------- ---------- bmy_18577T0/1-471 ---------- ---------- ---------- ---------- ---------- BACU004580/1-726 TGANPLSEFD SAVAVRSRKR KFLHDLPEKS RSNDRDFELS KDGFIKGSRE 701 750 ENSTTRP00000004900/1-604 ---------- ---------- ------ ENSBTAP00000006129/1-583 ---------- ---------- ------ ENSP00000384136/1-604 ---------- ---------- ------ bmy_18577T0/1-471 ---------- ---------- ------ BACU004580/1-726 LAIAASFSLK SHIVDSLRRT AGPLLS