KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:27 2014 Check: 00 .. Name: ENSP00000315664/1-549 Len: 555 Check: 2650 Weight: 1.00 Name: ENSBTAP00000006133/1-513 Len: 555 Check: 3506 Weight: 1.00 Name: ENSTTRP00000011684/1-542 Len: 555 Check: 4608 Weight: 1.00 Name: bmy_15299T0/1-349 Len: 555 Check: 3104 Weight: 1.00 Name: BACU005864/1-541 Len: 555 Check: 917 Weight: 1.00 // 1 50 ENSP00000315664/1-549 MPVDLGQALG LLPSLAKAED SQFSESDAAL QEELSSPETA RQLFRQFRYQ ENSBTAP00000006133/1-513 ---------- ---------- ---------- ------PETA RQLFRQFPYQ ENSTTRP00000011684/1-542 MPVELGQAPV LPPPLAKPKE SVFSGPDDTP RGEPSSSEIA RQLFRQFPYQ bmy_15299T0/1-349 MPVELGQAPV LLPPLAKAKE SVFSGPDATP RGEPSSSETA RQLFRQFPYQ BACU005864/1-541 MPVELGQAPV LLPPLAKAKE SAFSGPDATP RGEPSSSETA RQLFRQFPYQ 51 100 ENSP00000315664/1-549 VMSGPHETLK QLRKLCFQWL QPEVHTKEQI LEILMLEQFL TILPGEIQMW ENSBTAP00000006133/1-513 VMSGPHETLQ QLRKLCFQWL QPEVHTKEQI LEMLMLEQFL SILPGEIQTW ENSTTRP00000011684/1-542 VMSGPHETLR QLRKLCSQWL QPEVHTKEQI LEILTLEQFL TILPGEIQMW bmy_15299T0/1-349 VMSGPHETLR QLRKLCSQWL QPEVHTKEQI LEILTLEQFL TILPGEIQMW BACU005864/1-541 VMSGPHETLR QLRKLCSQWL QPEVHTKEQI LEILTLEQFL TILPGEIQMW 101 150 ENSP00000315664/1-549 VRKQCPGSGE EAVTLVESLK GDPQRLWQWI SIQVLGQDIL SEKMESPSCQ ENSBTAP00000006133/1-513 VRKQCPGSGE EAVTLVESLK GDPQRLWQWI SIQVLGQEVF SEKAEPASCP ENSTTRP00000011684/1-542 VRKQCPGSGE EAVTLVESLR GDPQKLWQWI SIQVLGQEVL SQKAEPESCP bmy_15299T0/1-349 VRKQCPGSGE EAVTLVESLR GDPQRLWQWI SIQVLGQEVL SQKAEPESCP BACU005864/1-541 VRKQCPGSGE EAVTLVESLR GDPQRLWQWI SIQVLGQEVL SQKAEPESCP 151 200 ENSP00000315664/1-549 VGEVEPHLEV VPQELGLENS SSGPGELLSH IVKEESDTEA ELALAAS--- ENSBTAP00000006133/1-513 AGDAGSPAE- EPQKLGLQNT APGPGEPLSC VVKEESDMEQ GLAAAATQLS ENSTTRP00000011684/1-542 LGEAEAHVE- VPQELGLQNS ACRSGEPLSH IVKEESDSEQ GLALAAS--- bmy_15299T0/1-349 LGEAEAHVE- VPQELGLQNS ACRSGEPLSH IVKEEADSEH GLALAAS--- BACU005864/1-541 LGEAEEHVE- VPQELGLQNS ACRSGEPLSH IVKEEADSEH GLALAAS--- 201 250 ENSP00000315664/1-549 --QPARLEER LIRDQDLGAS LLPAAPQEQW RQLDSTQKEQ YWDLMLETYG ENSBTAP00000006133/1-513 AQLPAQPEQM PVRDQDFRAS LLHTASQEQW RHLDSTQKEQ YWDLMLETYG ENSTTRP00000011684/1-542 -PLPARPEER LIRDQDFGAS LLHTAPQEQW RHLDSTQKEQ YWDLMLETYG bmy_15299T0/1-349 -PLPARPEER LIRDQDFGAS LLHTAPQGQW RHLDSTQKEQ YWDLMLETYG BACU005864/1-541 -PLPARPEER LVRDQDCGAC LLHTAPQEQW RHLDSTQKEQ YWDLMLETYG 251 300 ENSP00000315664/1-549 KMVS-GAGIS HPKSDLTNSI EFGEELAGIY LHVNEKIPRP TCIGDRQEND ENSBTAP00000006133/1-513 KMVSGGAGIS SARPDLTDPA GYGVELAGPH LQANEKIPRP TCIGDRGEND ENSTTRP00000011684/1-542 KMVS-GAGIS NPKHDLTDPA GFGAELTGPH LHISEKIPRS TCIGDRQEND bmy_15299T0/1-349 KMVS-G-GIS NPKHDLTDPA GFGAELTGPH LHISEKIPRP TCIGDRQEND BACU005864/1-541 KMVS-G-GIS NPKHDLTDPA GFGAELTGPH LHISEKIPRP TCIGDRQEND 301 350 ENSP00000315664/1-549 KENLNLENHR DQELLHASCQ ASGEVPSQAS LRGFFTEDEP GCFGEGENLP ENSBTAP00000006133/1-513 KENLNLENYR AQD-----PP ALGEPPPQAP LSGLFSEDEP RPFGEGEDLS ENSTTRP00000011684/1-542 KENLNLENYR DQD-----PQ ASGE-PPQTF LSGLFSKDEP RCFGEGENLP bmy_15299T0/1-349 KENLNLENYR DQD-----PQ ASGE-PPQTS LSGLFSKDEP RCFGEGENLP BACU005864/1-541 KENLNLENYR DQD-----PQ ASGE-PPQTS LSGLFSKDEP RCFGEGENLP 351 400 ENSP00000315664/1-549 EALQNIQDEG TGEQLSPQER ISEKQLGQHL PNPHSGEMST MWLEEKRETS ENSBTAP00000006133/1-513 EAQGNLRGEG TGGQLCPQER NSRKQPGPHL LPPLPGDSPA PWPEEKREAA ENSTTRP00000011684/1-542 EAQENLHGEG TGAQPSPRER NSGTQLGQH- LPPLPGEPSM PWLEGKREAS bmy_15299T0/1-349 EAQENLHA-- ---------- ---------- ---------- ---------- BACU005864/1-541 EAQENLHGEG TGAQLSPRER SSGTQLGQH- PPPLPGEPSA PWLEGKREAS 401 450 ENSP00000315664/1-549 QKGQPRAPMA QKLPTCRECG KTFYRNSQLI FHQRTHTGET YFQCTICKKA ENSBTAP00000006133/1-513 LRGQPRAPMA QRLPTCRECG KTFYRNSQLV FHQRTHSRET YFQCPTCQKA ENSTTRP00000011684/1-542 PRRQPRAPMA QRLPTCRECG KAFYRNSQLD FHQRTHTGET YFQCPTCKKA bmy_15299T0/1-349 ---------- ---------- ---------- ---------- ---------- BACU005864/1-541 PRRQPRAPMA QRLPTCRECG KTFYRNSQLD FHQRTHSGET YFQCPTCKKA 451 500 ENSP00000315664/1-549 FLRSSDFVKH QRTHTGEKPC KCDYCGKGFS DFSGLRHHEK IHTGEKPYKC ENSBTAP00000006133/1-513 FLRSSSFMKH QRIHTGEKPC KCDYCGKGFS DFSGLRYHKK IHTGEKPYKC ENSTTRP00000011684/1-542 FLRSSNFVKH QRIHTGEKPC KCDTCGKGFS DFSGLRHHEK IHTGEKPYKC bmy_15299T0/1-349 ---STVF--- ---------- ---------- ---------- ---------- BACU005864/1-541 FLRSSNFVKH QRIHTGEKPC KCDTCGKGFS DFSGLRHHEK IHTGEKPYKC 501 550 ENSP00000315664/1-549 PICEKSFIQR SNFNRHQRVH TGEKPYKCSH CGKSFSWSSS LDKHQRSHLG ENSBTAP00000006133/1-513 PVCEKSFIQR SNFNRHQRVH TGEKPYKCTR CGKSFSWSSS LDKHQRSHLG ENSTTRP00000011684/1-542 PICEKSFIQR SNFNRHQRVH TGEKPYKCSR CGKSFSWSSS LAKHQRSHLG bmy_15299T0/1-349 ---------- ---------- ---------- ---------- ---------- BACU005864/1-541 PICEKSFIQR SNFNRHQRVH TGEKPYKCSR CGKSFSWSSS LAKHQRSHLG 551 600 ENSP00000315664/1-549 KKPFQ ENSBTAP00000006133/1-513 KKPRP ENSTTRP00000011684/1-542 KKPFQ bmy_15299T0/1-349 ----- BACU005864/1-541 KKPFQ