KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:28 2014 Check: 00 .. Name: ENSTTRP00000009321/1-412 Len: 543 Check: 4889 Weight: 1.00 Name: ENSP00000297477/1-413 Len: 543 Check: 3782 Weight: 1.00 Name: ENSBTAP00000006135/1-414 Len: 543 Check: 9849 Weight: 1.00 Name: BACU005490/1-473 Len: 543 Check: 7760 Weight: 1.00 Name: bmy_08951T0/1-386 Len: 543 Check: 3235 Weight: 1.00 // 1 50 ENSTTRP00000009321/1-412 ---------- --MTNASGLL GDPLMW---- ---------- ---------- ENSP00000297477/1-413 ------MSNV SGILETAGVP LVSANW---- ---------- ---------- ENSBTAP00000006135/1-414 ---------- --MTDTPGLL GTPLAW---- ---------- ---------- BACU005490/1-473 ---MEGKPLV ISKEKTAVVC GVPTQLVCTA FSTHILVVVT QFGKMGTLVS bmy_08951T0/1-386 CRVSAK---- -GRAQGGSLC FLPLGW---- ---------- ---------- 51 100 ENSTTRP00000009321/1-412 ---------- ---------- ---------- ---------- ---------- ENSP00000297477/1-413 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006135/1-414 ---------- ---------- ---------- ---------- ---------- BACU005490/1-473 LEPSNVTSDV GKPVLTTKVL LGQDEPLIHV FAKNLVAFVS QEAGNRAVLL bmy_08951T0/1-386 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009321/1-412 ---------- ---------- ------ATGP QSSPPLAVPT GLQVDRVGNS ENSP00000297477/1-413 ---------- ---------- ------P--- QPSPPPAVPA GPQMDHMGNS ENSBTAP00000006135/1-414 ---------- ---------- ---------- ---TPPARPA GPQMERAGNG BACU005490/1-473 ALAVKDKSLE GVTALKEEIR TCQMTNASGL LGAPPQAVPA RPQVDRVGNS bmy_08951T0/1-386 ---------- ---------- ------R--- VGHVPQACLA PPT------- 151 200 ENSTTRP00000009321/1-412 SQGASQLFLT TALARGISGV FVWTALVLTG HQIYLHLRSY TVPDEQRYII ENSP00000297477/1-413 SQGAPWLFLT SALARGVSGI FVWTALVLTC HQIYLHLRSY TVPQEQRYII ENSBTAP00000006135/1-414 SQGPGPLFLT SPLARGVSGV FVWAALVLTG HQIYLHLRSY TVPHEQRYII BACU005490/1-473 SQGTSQLFLT TALARGVSGV FVWTALVLTG HQIYLHLRSY TVPSEQRHII bmy_08951T0/1-386 ---------- ---------- ---------- -QIYLHLRSY TVPNEQRYII 201 250 ENSTTRP00000009321/1-412 RLLFIVPIYA FDSWLSLLLL GGHQHYVYFD SVRDCYEAFV IYSFLSLCFQ ENSP00000297477/1-413 RLLLIVPIYA FDSWLSLLLL GDHQYYVYFD SVRDCYEAFV IYSFLSLCFQ ENSBTAP00000006135/1-414 RLLFIVPVYA FDSWLSLLLL GGHQHYIYFD SVRDCYEAFV IYSFLSLCFQ BACU005490/1-473 RLLFIVPIYA FDSWLSLLLL GGHQHYVYFD SVRDCYEAFV IYSFLSLCFQ bmy_08951T0/1-386 RLLFIVPIYA FDSWLSLLLL GGHQHYVYFD SVRDCYEAFV IYSFLSLCFQ 251 300 ENSTTRP00000009321/1-412 YLGGESGIMA EIRGKPI--- -------RPS CFYGTCCLRG MSYSIGFLRF ENSP00000297477/1-413 YLGGEGAIMA EIRGKPI--- -------KSS CLYGTCCLRG MTYSIGFLRF ENSBTAP00000006135/1-414 YLGGESAIMA EIRGKPV--- -------RTS CFHGTCCLRG MTYSIGFLRF BACU005490/1-473 YLGGESAIMA EIRGKPIRDT PQGLPHPRPS CFYGTCCLQG MSYSIGFLRF bmy_08951T0/1-386 YLGGESAIMA EIRGKPI--- -------RPS CFYGTCCLRG MSYSIGFLRF 301 350 ENSTTRP00000009321/1-412 CKQATLQFCI VKPIMALVTI ILQAFGKYHD GDFNIHSGYL YVTLIYNXXX ENSP00000297477/1-413 CKQATLQFCL VKPVMAVTTI ILQAFGKYHD GDFNVRSGYL YVTLIYNASV ENSBTAP00000006135/1-414 CKQATLQFCI VKPIMALVTI VLQAFGKYHD GDFNVRSGYL YITLVYNASV BACU005490/1-473 CKQATLQFCV VKPIMALVTI VLQALGKYHD GDFNIHSGYL YVTLIYNASV bmy_08951T0/1-386 CKQATLQFCI VKPIMALVTI VLQAFGKYHD GDFNIHSGYL YVTLIYNSSV 351 400 ENSTTRP00000009321/1-412 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XMLLAILERC ENSP00000297477/1-413 SLALYALFLF YFTTRELLRP FQPVLKFLTI KAVIFLSFWQ GLLLAILERC ENSBTAP00000006135/1-414 SLALYALFLF YSATRELLQP FEPVLKFLTI KAVIFLSFWQ GLLLAILERC BACU005490/1-473 SLALYALFLF YFATRELLKP FEPVLKFLTI KAVIFLSFWQ ---------- bmy_08951T0/1-386 SLALYALFLF YFATRELLQP FEPVLKFLTI KAVIFLSFWQ GMLLAILERC 401 450 ENSTTRP00000009321/1-412 GVIPEAQIID GSSVRAGTVA AGYQNLIICI EMLFASIALR YAFTCQVYSE ENSP00000297477/1-413 GVIPEVETSG GNKLGAGTLA AGYQNFIICV EMLFASVALR YAFPCQVYAE ENSBTAP00000006135/1-414 GVIPEVQVID GSTVGAGTVA AGYQNFIICI EMLFASIALR YAFTCQVYSE BACU005490/1-473 ---------- ---------- ---------- ---------- ---------- bmy_08951T0/1-386 GVLPEAQVIE GSRVGAGTVA AGYQNLAICI EMFFASVALR YAFTCQVYSE 451 500 ENSTTRP00000009321/1-412 KKERSPAPTA PMQSISSGLK ETVSPQDIVQ DAIHNFSPAY QQYTQQATHE ENSP00000297477/1-413 KKENSPAPPA PMQSISSGIR ETVSPQDIVQ DAIHNFSPAY QHYTQQATHE ENSBTAP00000006135/1-414 KTESSPAPSA PMQSISSGLK ETMSPQDIVQ DAIHNFSPAY QKYTQQATQE BACU005490/1-473 ------APTA PMQSISSSLK ETVSPQDIVQ DAIHNFSPAY QQYTQQATHE bmy_08951T0/1-386 KKERSPAPTA PMQSISSGLK ETVSPQDIVQ DAIHNFSPAY QQYTQQATHE 501 550 ENSTTRP00000009321/1-412 APGPST---- -----HPGTD VGSSRGRKSR NMEKRMLIPA EEL ENSP00000297477/1-413 APRPGT---- -----HPS-- GGSGGSRKSR SLEKRMLIPS EDL ENSBTAP00000006135/1-414 APRPGQGSVP SPRTPTHSPD GGPGGGRKGR NVEKRMLIPA EEL BACU005490/1-473 APGPGQGRDP LPST-HPGMD GGCGGGRKSR NVEKRMLNTA EEL bmy_08951T0/1-386 APGPGQGRDA LPGT-HPGMD GGCGGGRKSR NMEKRMLIPG EEL