KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:28:28 2014 Check: 00 .. Name: ENSBTAP00000006144/1-609 Len: 798 Check: 3749 Weight: 1.00 Name: BACU006938/1-755 Len: 798 Check: 8800 Weight: 1.00 Name: bmy_00223T0/1-575 Len: 798 Check: 4922 Weight: 1.00 Name: ENSTTRP00000011458/1-568 Len: 798 Check: 2797 Weight: 1.00 // 1 50 ENSBTAP00000006144/1-609 MASALSYVSK FKSFVILFLT PILLLPLIIL MPAK------ ---------- BACU006938/1-755 MASALSYVSK FKSFVILFVT PILLLPLIIL MPAKSMPCCP ERSGVGSGAA bmy_00223T0/1-575 MASALSYVSK FKSFVILFVT PILLLPLIIL MPAKSMPCCP ERSGVGSGAA ENSTTRP00000011458/1-568 MASALSYVSK FKSFVILFVT PILLLPLIIL MPAK------ ---------- 51 100 ENSBTAP00000006144/1-609 ---------- -FVRCAYIII IMAVYWCTEV IPLAVTALLP ALLFPLFKIL BACU006938/1-755 AARQASVLSL QFVRCAYVII LMAIYWCTEV IPLAVTALMP ALFFPLFKIL bmy_00223T0/1-575 AARQASVPSL QFVRCAYVII LMAIYWCTEV IPLAVTALMP ALFFPLFKIL ENSTTRP00000011458/1-568 ---------- -FVRCAYVII LMAIYWCTEV IPLAVTALMP ALFFPLFKIL 101 150 ENSBTAP00000006144/1-609 DFKQVSIQYM KDTNMLFLGG LIVAVAVEHW KLHKRIALRT LLWVGTKPAQ BACU006938/1-755 DSKQVCVQYM KDTNMLFLGG LIVAVAVEHW NLHKRIALRT LLWVGAKPAQ bmy_00223T0/1-575 DSKQVCVQYM KDTNMLFLGG LIVAVAVEHW NLHKRIALRT LLWVGAKPAQ ENSTTRP00000011458/1-568 DSKQ-CVQYM KDTNMLFLGG LIVAVAVEHW NLHKRIALRT -LWVGAKPAQ 151 200 ENSBTAP00000006144/1-609 LMLGFMCATA FLSMWISNTA TTAMMVPIVE AVLQQMEATS AATEASLGTL BACU006938/1-755 LMLGFMGVTA FLSMWISNTA TTAMMVPLVE AVLRQMEAMS AATEASLGAL bmy_00223T0/1-575 LMLGFMGVTA FLSMWISNTA TTAMMVPLVE AVLRQMEAMS AATEASLGAL ENSTTRP00000011458/1-568 LMLGFMGVTA FLSMWISNTA TTAMMVPLVE AVLRQMEAMS AATEASLGAL 201 250 ENSBTAP00000006144/1-609 ELAEKGKAGE LPGEPLARAC ADDSRGPSDS SFDLGETTEC HKPDTEEAQN BACU006938/1-755 ELTDKGKAGE LP-------- ---------- ---------- ---------- bmy_00223T0/1-575 ELADKGKAGE LP-------- ---------- ---------- ---------- ENSTTRP00000011458/1-568 ELADRGKAGE LP-------- ---------- ---------- ---------- 251 300 ENSBTAP00000006144/1-609 SMPTTGNQTT LEGPSMRQQE VNRKNVCKAM TLCICYSASI GGTATLTGTG BACU006938/1-755 -----GSQAN FEGPSMRQRE VDRKNICKAM TLCVCYAASI GGTATLTGTG bmy_00223T0/1-575 -----GSQAN FEGPSMRQRE VDRKNXCKAM TLCVCYAASI GGTATLTGTG ENSTTRP00000011458/1-568 -----GSQEN FEGPSMRQRE VDRKNICKAM TLCVCYAASI GGTATLTGTG 301 350 ENSBTAP00000006144/1-609 PNVVLLGQMQ ELFPDSKDIV NFASWFGFAF PNMLIMLLLS WLWLRFMYMR BACU006938/1-755 PNVVLLGQMQ ELFPDSKDVV NFASWFGFAF PNMLIMLLLS WLWLRFIYMR bmy_00223T0/1-575 PNVVLLGQMQ ELFPDSKDVV NFASWFGFAF PNMLIMLLLS WLWLRFIYMR ENSTTRP00000011458/1-568 PNVVLLGQMQ ELFPDSKDVV NFASWFGFAF PNMLIMLLLS WLWLRCTYMR 351 400 ENSBTAP00000006144/1-609 FDL--SWGCS LEKKSEEKSA HEVLWAEYRK LGPLSFAEIN VLLCFFLLVG BACU006938/1-755 FNIKESWGCG LEKKSEEKAA REVLWAEYRK LGPLSFAEVN VLLCFFLLVG bmy_00223T0/1-575 FNIKESWGCG LEKKSEEKAA HEVLWAEYRK LGPLSFAEVN VLLCFFLLVG ENSTTRP00000011458/1-568 FNIKESWGCG LEKKSEEKAA HEVLWAEYRK LGPLSFAEVN VLLCFFLLVG 401 450 ENSBTAP00000006144/1-609 LWFTRDPGFM PGWVSIAWTE GKTKYASDAT VAIFVAILLF IMPSQKPKFN BACU006938/1-755 LWFSRDPGFM PGWLSIAWVE GKTKYASDAT VAIFVAILLF IVPSQKPKFN bmy_00223T0/1-575 LWFSRDPGFM PGWLSIAWVE GKTKYASDAT VAIFVAILLF IVPSQKPKFN ENSTTRP00000011458/1-568 LWFSRDPGFM PGWLSITWVE GKTKYASDAT VAIFVAILLF IVPSQKPKFN 451 500 ENSBTAP00000006144/1-609 FCSQTEEERK TPFYPPPLLN WKVAQEKVPW GIVLLLGGGF AVANGCEASG BACU006938/1-755 FCSQTEEERK TPFYPPPLLN WKVAQEKVPW GIVLLLGGGF ALAKGCEASG bmy_00223T0/1-575 FCSQTEE--- ---------- -------VPW GIVLLLGGGF ALAKGCEASG ENSTTRP00000011458/1-568 FCSQTEEEMK TPFYPPPLLN WKVAQEKVPW GIVLLLGGGF ALAKGCEASG 501 550 ENSBTAP00000006144/1-609 LSEWMGKQME PLHTVSPTAI TLIMSSLIAV LTECTSNVAT TTLFLPIFAS BACU006938/1-755 LSEWMGSQME PLHAVSPAAI TLILSTLIAV LTECTSNVAT TTLFLPIFAS bmy_00223T0/1-575 LSEWMGKQME PLHAMSPAAI TLILSTLIAV LTECTSNVAT TTLFLPIFAS ENSTTRP00000011458/1-568 LSEWMGKQME PLHAVSPAAI TLILSTLIAV LTECTSNVAT TTLFLPIFAS 551 600 ENSBTAP00000006144/1-609 MSRSIGLNPL YIMIPCTLSS SFAFMLPVAT PPNAIVFSYG HLKVSDMM-- BACU006938/1-755 MSRSIGLNPL YIMIPCTLTS SFAFMLPVAT PPNAIVFSYG HLKVSDMKYK bmy_00223T0/1-575 MSRSIGLNPL YIMIPCTLTS SFAFMLPVAT PPNAIVFSYG HLKVSDMM-- ENSTTRP00000011458/1-568 MSRSIGLNPL YIMIPCTLTS SFAFMLPVAT PPNAIVFSYG HLKVSDMM-- 601 650 ENSBTAP00000006144/1-609 -----KTGLI MNVIG----- ---------- ---------- ---------- BACU006938/1-755 MHQRPEEGTV RSTVGHESKG LCKELAEARS RVLQKVVLRQ GKSKLQVLSG bmy_00223T0/1-575 -----KTGLI MNVIG----- ---------- ---------- ---------- ENSTTRP00000011458/1-568 -----KTGLI MNVIG----- ---------- ---------- ---------- 651 700 ENSBTAP00000006144/1-609 ---------- ---------- ---------- ---------- -ITCV----- BACU006938/1-755 LGPKPPFSII SGNEEQPKNR GEVQNRDDAG NRLRFQLELE FVQCLANPNY bmy_00223T0/1-575 ---------- ---------- ---------- ---------- -ITCV----- ENSTTRP00000011458/1-568 ---------- ---------- ---------- ---------- -ITCV----- 701 750 ENSBTAP00000006144/1-609 --FLAINTWG R--------- ---------- ---------- ---VIFDLDQ BACU006938/1-755 LNFLAQRGYF KDKAFVNYLK YLLYWKEPEY AKYLKYPQCL HMLELLQYEH bmy_00223T0/1-575 --FLAINTWG R--------- ---------- ---------- ---VIFDLDS ENSTTRP00000011458/1-568 --FLAVNTWG R--------- ---------- ---------- ---VIFDLDS 751 800 ENSBTAP00000006144/1-609 FPD------- ---------- -WANVTTH-- ---------- -------- BACU006938/1-755 FRKELVNAQC AKFIDEQQIL HWQHYSRKRM RLQQALAEQQ QHNNASGK bmy_00223T0/1-575 FPD------- ---------- -WANVTAH-- ---------- -------- ENSTTRP00000011458/1-568 FPD------- ---------- -WANVTHTET ---------- --------