KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:31 2014 Check: 00 .. Name: ENSTTRP00000010924/1-545 Len: 570 Check: 5394 Weight: 1.00 Name: ENSP00000345667/1-546 Len: 570 Check: 5230 Weight: 1.00 Name: ENSBTAP00000006175/1-550 Len: 570 Check: 8048 Weight: 1.00 Name: bmy_16365T0/1-563 Len: 570 Check: 9532 Weight: 1.00 Name: BACU019830/1-509 Len: 570 Check: 124 Weight: 1.00 // 1 50 ENSTTRP00000010924/1-545 ------MSPE LPAPWLLLF- TWLPAGCVSL LVTVQHTERY VTLFASVVLK ENSP00000345667/1-546 -----MAWPK LPAPWLLLC- TWLPAGCLSL LVTVQHTERY VTLFASIILK ENSBTAP00000006175/1-550 ------MGSE LPAPWLLLF- TWLPTGCMSL LVTVQHTERY VTLFASVILK bmy_16365T0/1-563 MNRSRSPLRD LPKVCLQHCL PLLAAGCVSL LVTVQHTERY VTLFASVVLK BACU019830/1-509 ---------- ---------- --LAAGCVSL LVTVQHTERY VTLFASVVLK 51 100 ENSTTRP00000010924/1-545 CDYTTSAQLQ DVVVTWRFKS FCKDPIFDYY SASYQAALSL GQDPSNDCND ENSP00000345667/1-546 CDYTTSAQLQ DVVVTWRFKS FCKDPIFDYY SASYQAALSL GQDPSNDCND ENSBTAP00000006175/1-550 CDYTTSAQLQ DVVVTWRFKS FCKDPIFDYY SASYQAALSL GQDPSNDCND bmy_16365T0/1-563 CDYTTSAQLQ DVVVTWRFKS FCKDPIFDYY SASYQAALSL GQDPSNDCND BACU019830/1-509 CDYTTSAQLQ DVVVTWRFKS FCKDPIFDYY SASYQAALSL GQDPSNDCND 101 150 ENSTTRP00000010924/1-545 SQREVRIVAQ RRGQNEPVLG VDYRQRKITI QNRADLVINE VMWWDHGVYY ENSP00000345667/1-546 NQREVRIVAQ RRGQNEPVLG VDYRQRKITI QNRADLVINE VMWWDHGVYY ENSBTAP00000006175/1-550 SQREVRIVAQ RRGQSEPVLG VDYRQRKITI QNRADLVINE VMWWDHGVYY bmy_16365T0/1-563 SQREVRIVAQ RRGQNEPVLG VDYRQRKITI QNRADLVINE VMWWDHGVYY BACU019830/1-509 SQREVRIVAQ RRGQNEPVLG VDYRQRKITI QNRADLVINE VMWWDHGVYY 151 200 ENSTTRP00000010924/1-545 CTIEAPGDTS GDPDKEVKLI VLHWLTVILI ILGALLLLLL IGVCWCQCCP ENSP00000345667/1-546 CTIEAPGDTS GDPDKEVKLI VLHWLTVIFI ILGALLLLLL IGVCWCQCCP ENSBTAP00000006175/1-550 CTIEAPGDTS GDPDKEVKLI VLHWLTVIFI ILGALLLLLL IGVCWCQCCP bmy_16365T0/1-563 CTIEAPGDTS GDPDKEVKLI VLHWLTVIFI ILGALLLLLL IGVCWCQCCP BACU019830/1-509 CTIEAPGDTS GDPDKEVKLI VLHWLTVIFI ILGALLLILL IGVCWCQCCP 201 250 ENSTTRP00000010924/1-545 QYCCCYVRCP CCPDRCCCPE EAMAHQRNMK QAQALGPQMI EKPLYWGADR ENSP00000345667/1-546 QYCCCYIRCP CCPAHCCCPE EALARHRYMK QAQALGPQMM GKPLYWGADR ENSBTAP00000006175/1-550 QYCCCYLRCP CCPNRCCCPQ EALARHRYMK QAQALGSQMM EKPLYWGADR bmy_16365T0/1-563 QYCCCYLRCP CCPTRCCCPE EALAHHRYMK QAQALGPQMI EKPLYWGADR BACU019830/1-509 QYCCCYLRCP CCPTRCCCPE EALAHHRYMK QAQALGPQMI EKPLYWGADR 251 300 ENSTTRP00000010924/1-545 SSQFSSYPMN PLLQRDLSLR SSLPEM---- TTAHPPITNG VLEYLEKELR ENSP00000345667/1-546 SSQVSSYPMH PLLQRDLSLP SSLPQMPMTQ TTNQPPIANG VLEYLEKELR ENSBTAP00000006175/1-550 SSQFSSYPMN PLLQRDLSLR SSLPEVPMTQ ATAHPPIPNG VLEYLEKELR bmy_16365T0/1-563 SSQFSSYPMN PLLQRDLSLR SSLPEMPVTQ STAHPPITNG VLEYLEKELR BACU019830/1-509 SSQVSSYPMN PLLQRDLSLR SSLPEVPVTQ TTAHPPITNG VLEYLEKELR 301 350 ENSTTRP00000010924/1-545 NLNPAQPLPA DLQGRSGQPR SMLSSLGSEV VERRIIHLPP LVRDLPSLRG ENSP00000345667/1-546 NLNLAQPLPP DLKGRFGHPC SMLSSLGSEV VERRIIHLPP LIRDLSSSRR ENSBTAP00000006175/1-550 NLNPAQPLPP DLQAISGHPC SILSSLGSEV VERRVIHLPP LVRDLPASRR bmy_16365T0/1-563 NLNPAQPLPA DLQGRSGHPR SMLSSLGSEV VERRIIHLPP LVRDLPSLRR BACU019830/1-509 NLNPAQPLPA DLQGRSGHPR SMLSSLGSEV VERRIIHLPP LVRDLPSLRR 351 400 ENSTTRP00000010924/1-545 TSNSSHQQWL P--PPPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000345667/1-546 TSDSLHQQWL T--PIPSRPW DLREGRSHHH YPDFHQELQD RGPKSWALER ENSBTAP00000006175/1-550 TSSSSRQQWL PTTPSPSRPW DLREGRRQHR CSDFHQELRD PEAQCWELEQ bmy_16365T0/1-563 TSNSSRQQWL P--PPPPGPW DLREGRRQHR YSDFQQEHRD REPQRWALEQ BACU019830/1-509 TSNSSRQQWL P--PPPPGPW DLREGRRQHR YSDFQQEHRD PEPQRWALEQ 401 450 ENSTTRP00000010924/1-545 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX --XXXXXXXX XXXXXXXXXX ENSP00000345667/1-546 RELDPSWSGR HRSSRLNGSP IHWSDRDSLS --DVPSSSEA RWRPSHPPFR ENSBTAP00000006175/1-550 RELDRLRRGR HRGSRHRWSP RRWSDRDSLS DGDGPSSSEA HWRPHRPPLR bmy_16365T0/1-563 RELGRLRSGR HRGSRQHGSP TPWSDRDSLS --DGPSSSEA RWPPNRPALR BACU019830/1-509 RELGRLRSGR HRGSRQRGSP TPWSDRDSLS --DGPSSSEA RWPPNRPPLR 451 500 ENSTTRP00000010924/1-545 XXXXXX-XXX XSPRGSAQRH -QRRRHRSYS PPLPS-LSSW SSEEEEEEKE ENSP00000345667/1-546 SRCQER-PRR PSPRESTQRH GRRRRHRSYS PPLPSGLSSW SS---EEDKE ENSBTAP00000006175/1-550 SRYPERDPRR PSLKESAQGH -QRRRPRSYS PPLPSGLSSW SS---EEEKE bmy_16365T0/1-563 SRFPER-PRG PSPRGRAQGH -QRRRHRSYS PPLPSGLSSW SS-EEEEEKE BACU019830/1-509 SRYPER-PRG PSPRGSARGH -QRRRHRSYS PPLPSGLSSW SS-EEEEEKE 501 550 ENSTTRP00000010924/1-545 RQPRNWGPRR RRRRRSRSPN WLEEKPPSYR SLDVTPGKDG RKKGSVERRS ENSP00000345667/1-546 RQPQSWRA-- -HRRGSHSPH WPEEKPPSYR SLDITPGKNS RKKGSVERRS ENSBTAP00000006175/1-550 RQPQSWET-- RRHRRSCSPN WPEEKPPSYR SLDVSSGKNG KKKGSVKRRL bmy_16365T0/1-563 RQPRNWGPRG RRRRRSRSPN WPEEKPPSYR SLDVTPGKNG RKKGSVQRRS BACU019830/1-509 RQPRNWGP-- RRRRRSRSPN WPEEKPPSYR SLDVTPGKNG ---------- 551 600 ENSTTRP00000010924/1-545 ------ERES SHSGRSVVI- ENSP00000345667/1-546 ------EKDS SHSGRSVVI- ENSBTAP00000006175/1-550 ------ERES SHSGRSVVI- bmy_16365T0/1-563 VSLGLPAEGR AWAERTLQPG BACU019830/1-509 ---------- ----------