KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:32 2014 Check: 00 .. Name: bmy_02879T0/1-380 Len: 612 Check: 5422 Weight: 1.00 Name: ENSP00000225893/1-557 Len: 612 Check: 2250 Weight: 1.00 Name: ENSBTAP00000006184/1-557 Len: 612 Check: 2557 Weight: 1.00 Name: BACU013976/1-612 Len: 612 Check: 4574 Weight: 1.00 Name: ENSTTRP00000015076/1-436 Len: 612 Check: 5117 Weight: 1.00 // 1 50 bmy_02879T0/1-380 MVSKLTSLQQ ELLSALLSSG VTKEVLVQAL EELLPSPSFG VKLETLPLSP ENSP00000225893/1-557 MVSKLTSLQQ ELLSALLSSG VTKEVLVQAL EELLPSPNFG VKLETLPLSP ENSBTAP00000006184/1-557 MVSKLTSLQQ ELLSALLSSG VTKEVLIQAL EELLPSPSFG VKLETLPLSP BACU013976/1-612 MVSKLTSLQQ ELLSALLSSG VTKEVLVQAL EELLPSPSFG VKLETLPLSP ENSTTRP00000015076/1-436 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_02879T0/1-380 GSGAEPDTKP VFHTLTNGHA KGRLSGDEGS EDGDDYDTPP ILKELQALNT ENSP00000225893/1-557 GSGAEPDTKP VFHTLTNGHA KGRLSGDEGS EDGDDYDTPP ILKELQALNT ENSBTAP00000006184/1-557 GSGAEPDTKP VFHTLTNGHA KGRLSGDEGS EDGDDYDTPP ILKELQALNT BACU013976/1-612 GSGAEPDTKP VFHTLTNGHA KGRLSGDEGS EDGDDYDTPP ILKELQALNT ENSTTRP00000015076/1-436 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_02879T0/1-380 EEAAEQRAEV DRMLSEDPWR AAKMIKGYMQ QHNIPQREVV DVTGLNQSHL ENSP00000225893/1-557 EEAAEQRAEV DRMLSEDPWR AAKMIKGYMQ QHNIPQREVV DVTGLNQSHL ENSBTAP00000006184/1-557 EEAAEQRAEV DRMLSEDPWR AAKMIKGYMQ QHNIPQREVV DVTGLNQSHL BACU013976/1-612 EEAAEQRAEV DRMLSEDPWR AAKMIKGYMQ QHNIPQREVV DVTGLNQSHL ENSTTRP00000015076/1-436 ---------- -----EDPWR AAKMIKGYMQ QHNIPQREVV DVTGLNQSHL 151 200 bmy_02879T0/1-380 SQHLNKGTPM KTQKRAALYT WYVRKQREIL RQFNQTVQSS GNLTDKSSQD ENSP00000225893/1-557 SQHLNKGTPM KTQKRAALYT WYVRKQREIL RQFNQTVQSS GNMTDKSSQD ENSBTAP00000006184/1-557 SQHLNKGTPM KTQKRAALYT WYVRKQREIL RQFNQTVQSS GNLTDKSSQD BACU013976/1-612 SQHLNKGTPM KTQKRAALYT WYVRKQREIL RQFNQTVQSS GNLTDKSSQD ENSTTRP00000015076/1-436 SQHLNKGTPM KTQKRAALYT WYVRKQREIL RQFNQTVQSS GNLTDKSSQD 201 250 bmy_02879T0/1-380 QLLFLFPEFS QQSQGPGQSD DACSEPTNKK MRRNRFKWGP ASQQILYQAY ENSP00000225893/1-557 QLLFLFPEFS QQSHGPGQSD DACSEPTNKK MRRNRFKWGP ASQQILYQAY ENSBTAP00000006184/1-557 QLLFLFPEFS QQSQGPGQSD DACSEPTNKK MRRNRFKWGP ASQQILYQAY BACU013976/1-612 QLLFLFPEFS QQSQGPGQSD DACSEPTNKK MRRNRFKWGP ASQQILYQAY ENSTTRP00000015076/1-436 QLLFLFPEFS QQSQGPGQSD DACSEPTNKK MRRNRFKWGP ASQQILYQAY 251 300 bmy_02879T0/1-380 DRQKNPSKEE REALVEECNR AECLQRGVSP SKAHGLGSNL VTEVRVYNWF ENSP00000225893/1-557 DRQKNPSKEE REALVEECNR AECLQRGVSP SKAHGLGSNL VTEVRVYNWF ENSBTAP00000006184/1-557 DRQKNPSKEE REALVEECNR AECLQRGVSP SKAHGLGSNL VTEVRVYNWF BACU013976/1-612 DRQKNPSKEE REALVEECNR AECLQRGVSP SKAHGLGSNL VTEVRVYNWF ENSTTRP00000015076/1-436 DRQKNPSKEE REALVEECNR AECLQRGVSP SKAHGLGSNL VTEVRVYNWF 301 350 bmy_02879T0/1-380 ANRRKEEAFR QKLAMDAYSS SQTHGLNPLL SHGSPPHQPS TSPPNKLP-- ENSP00000225893/1-557 ANRRKEEAFR QKLAMDAYSS NQTHSLNPLL SHGSPHHQPS SSPPNKLS-- ENSBTAP00000006184/1-557 ANRRKEEAFR QKLAMDAYSS SQTHGLNTLL SHGSPHHQPS TSPPNKLP-- BACU013976/1-612 ANRRKEEAFR QKLAMDAYSS SQTHGLNPLL SHGSPPHQPS TSPPNKLPVG ENSTTRP00000015076/1-436 ANRRKEEAFR QKLAMDAYSS SQTHGLNPLL SHGSPPHQPS TSPPNKLP-- 351 400 bmy_02879T0/1-380 ---------- ---------- ---------- ----GK---- ---------- ENSP00000225893/1-557 ---------- ---------- ---------- ----GVRYSQ QGNNEITSSS ENSBTAP00000006184/1-557 ---------- ---------- ---------- ----GVRYSQ QASNEVTSSS BACU013976/1-612 TCWIRPAMKP SESLLSKDGK PLNSISHLEN ISLHGVRYSQ QGNNEVTSSS ENSTTRP00000015076/1-436 ---------- ---------- ---------- ----GVRYSQ QGNNEVTSSS 401 450 bmy_02879T0/1-380 ---------- ---------- ------PGPN ---------- ---------- ENSP00000225893/1-557 TISHHGNSAM VTSQSVLQQV SPASLDPGHN LLSPDGKMIS VSGGGLPPVS ENSBTAP00000006184/1-557 TISHHGNSAM VTSQSVLQQV SPASLDPGHN LLSPDGKMIS VSGGGLPPVS BACU013976/1-612 TISHHGNSAM VTSQSVLQQV SPASLDPGHN LLSPDGKMIS VSGGGLPPVS ENSTTRP00000015076/1-436 TISHHGNSAM VTSQSVLQQV SPASLDPGHN LLSPDGKMIS VSGGGLPPVS 451 500 bmy_02879T0/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000225893/1-557 TLTNIHSLSH HNPQQSQNLI MTPLSGVMAI AQSLNTSQAQ SVPVINSVAG ENSBTAP00000006184/1-557 TLTNIHSLSH HNPQQSQNLI MTPLSGVMAI AQSLNSSQAQ SVPVINSVAG BACU013976/1-612 TLTNIHSLSH HNPQQPQNLI MTPLSGVMAI AQSLNSSQAQ SVPVINSVAG ENSTTRP00000015076/1-436 TLTNIHSLSH HNPQQSQNLI MTPLSGVMAI AQSLNSSQAQ SVPVINSVAG 501 550 bmy_02879T0/1-380 -ASATRPSGF S--------- ---------- ---------- ---------- ENSP00000225893/1-557 SLAALQPVQF SQQLHSPHQQ PLMQQSPGSH MAQQPFMAAV TQLQNSHMYA ENSBTAP00000006184/1-557 SLAALQPVQF SQQLHSPHQQ PLMQQSPGSH MAQQPFMAAV TQLQNSHMYT BACU013976/1-612 SLAALQPVQF SQQLHSSHQQ PLMQQSPGSH MAQQPFMAAV TQLQNSHMYA ENSTTRP00000015076/1-436 SLAALQPVQF SQQLHSSHQQ PLMQQSPGSH MAQQPFMAAV TQLQNSHMYA 551 600 bmy_02879T0/1-380 -----PRRSG YLRGGSAF-- ---------- ---------- -GWS------ ENSP00000225893/1-557 HKQEPPQYSH TSRFPSAMVV TDTSSISTLT NMSSSKQCPL QAW------- ENSBTAP00000006184/1-557 HKQEPPQYSH TSRFPSAMVV TDTSSISTLT NMSSSKQCPL QAW------- BACU013976/1-612 HKQEPPQYSH TSRFPSAMVV TDTSSISTLT NMSSSKQAGD EKPRKRKRES ENSTTRP00000015076/1-436 HKQEPPQYSH TSRFPSAMVV TDTSSISTLT NMSSSKQ--- ---------- 601 650 bmy_02879T0/1-380 ---------- -- ENSP00000225893/1-557 ---------- -- ENSBTAP00000006184/1-557 ---------- -- BACU013976/1-612 RSVYIMLLHR TN ENSTTRP00000015076/1-436 ---------- --