KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:28:33 2014  Check: 00 ..

 Name: ENSP00000329920/1-187     Len:    238  Check:  6606  Weight:  1.00
 Name: ENSBTAP00000006187/1-187  Len:    238  Check:  4905  Weight:  1.00
 Name: bmy_11785T0/1-200         Len:    238  Check:  5843  Weight:  1.00
 Name: ENSTTRP00000001547/1-184  Len:    238  Check:  9354  Weight:  1.00

//


                          1                                                   50
ENSP00000329920/1-187     MEVEEIYKHQ EVKMQAPAFR DKKQGVSAKN QGAHDPDYEN ITLAFKNQDH 
ENSBTAP00000006187/1-187  IETEEIYINQ -VKMQPVAFK DKRRGSSGNK EAADDPNYEN ITFTFKNQNR 
bmy_11785T0/1-200         -------MNQ EIKMQAAAFK DKKRGSPANK EGADDPAYEN II--FKTQHQ 
ENSTTRP00000001547/1-184  TEAEESSMNQ EIKMQAAAFK NKKRGSPAN- EGADDPAYEN IT--FKTQHQ 


                          51                                                 100
ENSP00000329920/1-187     AKGGHSRPTS Q--------- ---------- ---------- ---------- 
ENSBTAP00000006187/1-187  PKGSHSPPKN K--------- ---------- ---------- ---------- 
bmy_11785T0/1-200         PKGSHSPPKN KGKQPPTSPH HTALGGARGR DKGQCVKCWA LEMTCPASTP 
ENSTTRP00000001547/1-184  PKGSHSPPKN K--------- ---------- ---------- ---------- 


                          101                                                150
ENSP00000329920/1-187     VPAQCRPPSD STQVPCWLYR AILSLYILLA LAFVLCIILS AFIMVKNAEM 
ENSBTAP00000006187/1-187  VPAEPRPPLD TAQGHHWLPK AMMSLNTFLT LS---CMVLL AVVLVKNSEM 
bmy_11785T0/1-200         VPAQSKPPSD PAQVPRWLPR AMMNLYVLLA VS---CVVLL VLVLVKNSEM 
ENSTTRP00000001547/1-184  VPAQSKPASD PAQVPHWLPR ATMSLYVLLA LS---CVVLL AFVLVKNSKM 


                          151                                                200
ENSP00000329920/1-187     SKELLGFKRE LWNVSNSVQA CEERQKRGWD SV-------Q QSITMVRSKI 
ENSBTAP00000006187/1-187  SRELVVLKEE LWNVSTSVQE YQEEQKTQWG NVKQSVMAAK KSIDTVMTRI 
bmy_11785T0/1-200         SQELLVLKRE LQNVSLLVGE CQEEGKKHWS GVDQSIKAAK QGIDTVKSKV 
ENSTTRP00000001547/1-184  SQELLVLRTE LQKVSLSVGE CQDEEKKRWN DV-------K QGIDTVKSKV 


                          201                                                250
ENSP00000329920/1-187     DR----LETT LAGIKNIDTK VQKILEVLQ- KMPQSSPQ 
ENSBTAP00000006187/1-187  QE-------- VPNIDEVKKT LQEILSTLKT SKPSPTPQ 
bmy_11785T0/1-200         HEGNQKLRTL AT-------- ---------- -------- 
ENSTTRP00000001547/1-184  HEGNQKLKTL ATDMNQIRTT LQKILQTLK- -KPQPTPQ