KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:33 2014 Check: 00 .. Name: ENSP00000423933/1-503 Len: 503 Check: 7460 Weight: 1.00 Name: ENSBTAP00000006195/1-501 Len: 503 Check: 6393 Weight: 1.00 Name: bmy_08617T0/1-320 Len: 503 Check: 8030 Weight: 1.00 Name: ENSTTRP00000005287/1-472 Len: 503 Check: 4860 Weight: 1.00 Name: BACU001613/1-443 Len: 503 Check: 7936 Weight: 1.00 // 1 50 ENSP00000423933/1-503 MSEARGEPGS GPEAGARFFC TAGRGLEPFV MREVRARLAA TQVEYISGKV ENSBTAP00000006195/1-501 MAVVPGGPSS RPAAGAQFFC TAGRGLEPFL MREVRERLAA TQVEYISGKV bmy_08617T0/1-320 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005287/1-472 ---------- ---------- ---------- MREVRSRLAA TQVEYISGKV BACU001613/1-443 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000423933/1-503 FFTTCSDLNM LKKLKSAERL FLLIKKQFPL IISSVSKGKI FNEMQRLINE ENSBTAP00000006195/1-501 FFTTCSDLNM LKQLKSAERL FLLIKKQLPF PVSSVSKGKI LNELQRLIND bmy_08617T0/1-320 ---------M LKKLKSAERL FLLIKKQLPF NVSSVSKGKI LNEMQRLTND ENSTTRP00000005287/1-472 FFTTCSDLNM LKKLKSAERL FLLIKKQLPF NVSSVSKGKI FNEMQRLTND BACU001613/1-443 ---------M LKKLKSAERL FLLIKKQLPF NVSSVSKGKI LNEMQRLTND 101 150 ENSP00000423933/1-503 DPGSWLNAIS IWKNLLELDA KKEKLSQRDD NQLKRKVGEN EIIAKKLKIE ENSBTAP00000006195/1-501 DPESWLNAIS IWKNLLELDA KKEKLSHKNA NPLKRKVGED DITAKKLKTE bmy_08617T0/1-320 DPESWLNAIS IWKNLLELDA KKVKLSQKNA NPLKRKVGEN AIIAKKLKTE ENSTTRP00000005287/1-472 DPESWLNAIS IWKNLLELDA KKVKLSQKNA NPLKRRVGEN DIIAKKLKTA BACU001613/1-443 DPESWLNAIS IWKNLLELDA KKVKLSQKNA NPLKRKVGEN DIIAKKLKTE 151 200 ENSP00000423933/1-503 QMQKIEENRD CQLEKQIKEE TLEQRDFTTK SEKFQEEEFQ NDIEKAIDTH ENSBTAP00000006195/1-501 QIQELQETKE CQLEKQIEEK ILEQGNFITE GEKFQ--KLQ DDVTEAVDTR bmy_08617T0/1-320 QMQEIQENKE CQLEKQIEEE TLEQGNFTTK RDKSQ-EELQ NDVTEAVDTH ENSTTRP00000005287/1-472 QMQEIQENKE CQMEKQIEEE TLEQGNFTTK RDKSQ-EELQ NDVAEAVDTQ BACU001613/1-443 QMQEIQENKE CQLEKQIEEE TLEQGNFTTK RDKSQ-EELQ NDVAEAVGTH 201 250 ENSP00000423933/1-503 NQNDLTFRVS CRCSGTIGKA FTAQEVGKVI GIAIMKHFGW KADLRNPQLE ENSBTAP00000006195/1-501 NQTNLTFRVS CRCSGAVAKT LTAQEVGRVI GIALMKQFGW KADLRNPNLE bmy_08617T0/1-320 NQNNLTFRVS CRCSGAIAKT FTAQEVGRVI GIALMKQFGW KADLRNPDLE ENSTTRP00000005287/1-472 KQNDLTFRVS CRCSGAIVKT FTAQEVGRVI GIALMKQFGW KADLRNPNLE BACU001613/1-443 NQNDLTFRVS CRCSGAIART FTAQEVGRVI GIALTKQFGW KADLRNPNLE 251 300 ENSP00000423933/1-503 IFIHLNDIYS VVGIPVFRVS LASRAYIKTA GLRSTIAWAM ASLADIKAGA ENSBTAP00000006195/1-501 IFIHLSDVYS VLGIPVFRVP LACRAYIKTA GLRSTIAWAM ASLAEIKAGA bmy_08617T0/1-320 IFIHLSDIYS VVGIPVFRVP LASRAYIKTA GLRSTIAWAM ASLAEIKAGA ENSTTRP00000005287/1-472 IFIHLSDIYC VVGIPVFRVP LASRAYIKTA GLRSTIAWAM ASLAEIKAGA BACU001613/1-443 IFIHLSDIYS VVGIPVFRVP LASRAYIKTA GLRSTIAWAM ASLAEIKAGA 301 350 ENSP00000423933/1-503 FVLDPMCGLG TILLEAAKEW PDVYYVGADV SDSQLLGTWD NLKAAGLEDK ENSBTAP00000006195/1-501 VVLDPMCGLG TILLEAAKEW PHVYYVGADV SDSQLSGAYD NLRAAGLRDK bmy_08617T0/1-320 VVLDPMCGLG TILLEAAKEW PDVYYVGADV SDSQLLGACD NLKAAGLKDK ENSTTRP00000005287/1-472 VVLDPMCGLG TILLEAAKEW PDVYYMGADV SDSQLLGACD NLKAAGLKDK BACU001613/1-443 VVLDPMCGLG TILLEAAKEW PDVYYVGADV SDSQLLGACD NLKAAGLKDK 351 400 ENSP00000423933/1-503 IELLKISVIE LPLPSESVDI IISDIPFGKK FKLGKDIKSI LQEMERVLHV ENSBTAP00000006195/1-501 IELLQVSVIE LPLPSESVDI IISDIPFGKK FKLGKDIKRM LQEMERVLRV bmy_08617T0/1-320 IELLKVSVI- ---------- ---------- ---------- ---------- ENSTTRP00000005287/1-472 IELLKASVIE LPLPSESVDT IISDIPFGKK FKLGKDIKHI IQEMERVLRV BACU001613/1-443 IELLKVSVIE LPLPSESVDI IISDIPFGKK FKLGKDIKHI IQEMERVLRV 401 450 ENSP00000423933/1-503 GGTIVLLLSE DHHRRLTDCK ESNIPFNSKD SHTDEPGIKK CLNPEEKTGA ENSBTAP00000006195/1-501 GGTIVLLLSE DHHRHLKGGE ASSGPLNSQG GHTEEPGGEE RLTPAEKAAV bmy_08617T0/1-320 -GKIL----- ---------- ---------- ---------- ---------- ENSTTRP00000005287/1-472 GGTIVLLLSE DHHRRLKSCE ESSVPLNSKG SCKDKPGSTE CLNPEEKAAI BACU001613/1-443 GGTIVLLLSE DHHRRLKGCE ESSVPLNSKG SRTDKPGSTE CLNPEEKAAI 451 500 ENSP00000423933/1-503 FKTASTSFEA SNHKFLDRMS PFGSLVPVEC YKVSLGKTDA FICKYKKSHS ENSBTAP00000006195/1-501 SEPVSSPFAA SNQGRLDRMP PLGSLVPVDC YRVSLGKTDA LISKYKKSYS bmy_08617T0/1-320 ---------- -------KMQ TFGGNXRLQI HLES------ ---------- ENSTTRP00000005287/1-472 SEPASSSFAA SNQECLDRMP PFGSLVPVEC YRVSLGKTDA LIYKYKKSHS BACU001613/1-443 SEPASSSLAA SNQERLDRMP PFGSLVPVER YRVSLGKTDA LIYKYRKLHS 501 550 ENSP00000423933/1-503 SGL ENSBTAP00000006195/1-501 PGR bmy_08617T0/1-320 --- ENSTTRP00000005287/1-472 PGQ BACU001613/1-443 PGQ