KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:34 2014 Check: 00 .. Name: ENSP00000258991/1-1134 Len: 1137 Check: 1238 Weight: 1.00 Name: ENSBTAP00000006196/1-1054 Len: 1137 Check: 3903 Weight: 1.00 Name: ENSTTRP00000006631/1-1132 Len: 1137 Check: 8899 Weight: 1.00 Name: bmy_06547T0/1-601 Len: 1137 Check: 8202 Weight: 1.00 Name: BACU006121/1-1127 Len: 1137 Check: 1220 Weight: 1.00 // 1 50 ENSP00000258991/1-1134 MTSLYGRHAE KTTDMPKPSA PKVHVQRSVS RDTIAIHFSA SGEEEEEEEE ENSBTAP00000006196/1-1054 MTSLNGRHAE KTLDMPKPSA PRVHVQRSVS RDTIAIHFSV SGEEEEEEEE ENSTTRP00000006631/1-1132 MTSLNGRHAE KTIDMPKPSA PRVHVQRSVS RDTIAIHFSA SGEEEEEEEE bmy_06547T0/1-601 ---------- ---------- ---------- ---------- ---------- BACU006121/1-1127 MTSLNGRHAG KTIDMPKPSA PRVHVQRSVS RDTIAIHFSA SGEEEEEEEE 51 100 ENSP00000258991/1-1134 EFREYFEEGL DDQSIVTGLE AKEDLYLEPQ VGHDPAGPAA SPVLADGLSV ENSBTAP00000006196/1-1054 EFRELLEEGL DDQTVVTGLE AKEDLYLEPG GGHDPAGPGA QLILADGLSV ENSTTRP00000006631/1-1132 EFREYLEEGL DDQSIVTGLE AKEDLYLEPQ GGHDPAGPDA QLILADGLSV bmy_06547T0/1-601 ---------- ---------- ---------- ---------- ---------- BACU006121/1-1127 EFREYLEEGL DDQSIVTGLE AKEDLYLEPQ GGHDPNGPGA QLILADGLSV 101 150 ENSP00000258991/1-1134 SQAPAILPVS KNTVKLLESP VPAAQVLSTV PLAVSPGSSS SGPLASSPSV ENSBTAP00000006196/1-1054 S--PAVVPVS ENTVKLLEPP APAAQVFGTV PLALSPGSSS SGPIASSPSV ENSTTRP00000006631/1-1132 S--PAILPVS ENTAKLLEPP PAAAQVLSTV PLALSPGLSS SGPLASSPSV bmy_06547T0/1-601 ---------- ---------- ---------- ---------- ---------- BACU006121/1-1127 S--PAILPVC ENTAKLLEPP PPAAQVLSTV PLALSPGSSS SGPLASSPSV 151 200 ENSP00000258991/1-1134 SSLSEQKTSS SSPLSSPSKS PILSSSASTS TLSSAKPFMS LVKSLSTEVE ENSBTAP00000006196/1-1054 SSLSEQKTSS SSPLSSPSRS PILSSSASSS TLSSAKPFLS LVKSLSTEVE ENSTTRP00000006631/1-1132 SSLSEQKTSS SSPLSSPSRS PILPSSASSS TLSSAKPFMS LVKSLSTEVE bmy_06547T0/1-601 ---------- ---------- --MPKSRSSA LL-------- ---------- BACU006121/1-1127 SSLSEQKTSS SSPLSSPSRS PILPSSASSS TLSSAKPFMS LVKSLSTEVE 201 250 ENSP00000258991/1-1134 PKESPHPARH RHLMKTLVKS LSTDTSRQES DTVSYKPPDS KLNLHLFKQF ENSBTAP00000006196/1-1054 PKESPHPPRH RHLMKTLVKS LSTDTSRQES DAVSYRPPDS KLNLHLFKQF ENSTTRP00000006631/1-1132 PKESPHPPRH RHLMKTLVKS LSTDTSRQES DNVSYKPPDS KLNLHLFKQF bmy_06547T0/1-601 ---------- ---------- ---------- ---------- ---------- BACU006121/1-1127 PKESPHAPRH RHLMKTLVKS LSTDTSRQES DNVSHKPPDS KLNLHLFKQF 251 300 ENSP00000258991/1-1134 TQPRNTGGDS KTAPSSPLTS PSDTRSFFKV PEMEAKIEDT KRRLSEVIYE ENSBTAP00000006196/1-1054 TQPRNTGGDS KTAPSSPLTS PSDTRSFFKV PEMEAKIEDT KRRLSEVIYD ENSTTRP00000006631/1-1132 TQPRNTGGDS KTAPSSPLTS PSDTRSFFKV PEMEAKIEDT KRRLSEVIYD bmy_06547T0/1-601 ---------- ---------- ---------- ---------- ---------- BACU006121/1-1127 TQPRNTGGDS KTAPSSPLTS PSDTRSFFKV PEMEAKIEDT KRRLSEVIYD 301 350 ENSP00000258991/1-1134 PFQLLSKIIG EESGSHRPKA LSSSASELSN LSSLNGHLES NNNYSIKEEE ENSBTAP00000006196/1-1054 PFQLFSKIIG EESGSHRPKA LSSSASELSN LSSLNGHLES NNNYSIKEEE ENSTTRP00000006631/1-1132 PFQLFSKIIG EESGSHRPKA LSSSASELSN LSSLNGHLEG NNNYSIKEEE bmy_06547T0/1-601 ---------- ---------- ---------- ---------- ---------- BACU006121/1-1127 PFQLFSKIIG EESGSHRPKA LSSSASELSN LSSLNGHLES NNNYSIKEEE 351 400 ENSP00000258991/1-1134 CDSEGDGYGS DSNIPRSDHP KSTGEPTREI ELKSSQGSSL KDLGLKTSSL ENSBTAP00000006196/1-1054 CDSEGEGMGS DPGVPRSDQP QSSEEPAREA EPRSSQGSGL KEGGPKTSSL ENSTTRP00000006631/1-1132 CDSEGEGLGS DPGVPRSDHP QSSEDPAREA EPKSSQGSSL KEVGLKTGSL bmy_06547T0/1-601 CD-------- ---------- ---------- ---------- ---------- BACU006121/1-1127 CDSEGEGLGS DPGVPGRDPP QSSEDPAREA EPKGSQGSSL KEAGLKTGSL 401 450 ENSP00000258991/1-1134 VLEKCSLSAL VSKEDEEFCE LYTEDFDLET EGESKVDKLS DIPLKPEVLA ENSBTAP00000006196/1-1054 VLEKCSLSAL ASKEDEEFCE LYTEDFDLEP EGESKAEKLP EGPLKPEGLA ENSTTRP00000006631/1-1132 VLERCXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06547T0/1-601 ---------- ---------- ---------- ---------- ---------- BACU006121/1-1127 VLERCSLSAL VSKEDEEFCE LYTEDFDLET EGESKVEKLP EVPLKPEVLA 451 500 ENSP00000258991/1-1134 EDGVVLDSED EVDSAVQHPE LPVKTLGFFI MCVYVYLILP LPHYVSGLFL ENSBTAP00000006196/1-1054 DDGPALDSDH EVDSAAQQLE LPVKTLGCFV LCVYAYLILP LPHYVSGLFL ENSTTRP00000006631/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06547T0/1-601 ---------- ---------- ---------- ---------- --------FT BACU006121/1-1127 DDGTALDS-D ETDSAVQRPE LPVKTLGFFV VCVYAYLILP LPHYVSGLFL 501 550 ENSP00000258991/1-1134 GIGLGFMTAV CVIWFFTPPS AHKYHKLHKN LRHWNTRSLD IKEPEILKGW ENSBTAP00000006196/1-1054 GVGLGFMTAV CLIWFFTPPS AHKHHRLHKH LQHWNPRSLD IKEPEILKGW ENSTTRP00000006631/1-1132 XXXXXXXXXX XXIWFFTPPS AHKYHRLHKN LQHWNPRSLD IKEPEILKGW bmy_06547T0/1-601 EIEMGSM--- ---------- ---------- ---------- --------GW BACU006121/1-1127 GIGLGFMTAV CVIWFFTPPS AHKYHRLHKN LQHWNPRSLD IKEPEILKGW 551 600 ENSP00000258991/1-1134 MNEIYNYDPE TYHATLTHSV FVRLEGGTLR LSKPNKNISR RASYNEPKPE ENSBTAP00000006196/1-1054 MNEIYNYDPE TYHATLTHSV FVRLEGGTLR LSKPNKNISR RASYNETKPE ENSTTRP00000006631/1-1132 MNEIYNYDPE TYHATLTHSV FVRLEGGTVR LSKPNKNISR RASYNETKPE bmy_06547T0/1-601 MNEIYNYDPE TYHATLTHSV FVRLEGGTLR LSKPNKNISR RASYNETKPE BACU006121/1-1127 MNEIYNYDPE TYHATLTHSV FVRLEGGTLR LSKPNKNISR RASYNETKPE 601 650 ENSP00000258991/1-1134 VTYISQKIYD LSDSKIYLVP KTLARKRIWN KKYPICIELG QQDDFMSKAQ ENSBTAP00000006196/1-1054 VTYISQKIYD LSDSKVYLVP KSLARKRIWN KKYPICIELG QQDDFMSKAQ ENSTTRP00000006631/1-1132 VTYVSQKIYD LSDSKIYLVP KSLARKRIWN KKYPICIELG RQDDFMSKAQ bmy_06547T0/1-601 VTYISQKIYD LSDSKIYLVP KSLARKRIWN KKYPICIELG RQDDFMSKAQ BACU006121/1-1127 VTYISQKIYD LSDSKIYLVP KSLARKRIWN KKYPICIELG RQDDFMSKAQ 651 700 ENSP00000258991/1-1134 TDKETSEEKP PAE---GSED PKKPPRPQEG TRSSQRDQIL YLFGRTGREK ENSBTAP00000006196/1-1054 TDKETCEEKP PAERELGGED PKKPPHPQEG TRSGHRDQIL YLFGRTGREK ENSTTRP00000006631/1-1132 TDKETSEEKP PAERELGGED PKKPTHPQEG TRSGQRDQIL YLFGRTGREK bmy_06547T0/1-601 TDKETSEEKP PAERELAGED PKKPTHPQEG TRSGQRDQIL YLFGRTGREK BACU006121/1-1127 TDKETSEEKP PAERELGGED PKKPPHPQEG TRSGQRDQIL YLFGRTGREK 701 750 ENSP00000258991/1-1134 EEWFRRFILA SKLKSEIKKS SGVSGGKPAP VFLAPGLLPA HSRHNSPSGH ENSBTAP00000006196/1-1054 EEWFRRFILA SKPKSETKKP SGVSGSK--- ----AGVLPS HSRHSSPSGH ENSTTRP00000006631/1-1132 EEWFRRFILA SKLKSETRKP PGVSGSKPA- IFFAPGVLPS HSRHNSPSGH bmy_06547T0/1-601 EEWFRRFILA SKLKSETKKP PGVSGSK--- ----PGVLPS HSRHNSPSGH BACU006121/1-1127 EEWFRRFILA SKLKSETKKP PGVSGSK--- ----PGVLPS HSRHNSPSGH 751 800 ENSP00000258991/1-1134 LTHSRSSSKG SVEEIMSQPK QKELAGSVRQ KMLLDYSVYM GRCVPQESRS ENSBTAP00000006196/1-1054 LTHSRSSSKG SVDELVAQPK QKELVGGVRQ KMLLDYSVYM ARCVPQENRS ENSTTRP00000006631/1-1132 LTHSRSSSKG SVEEIMPQPK QKELAGSVRQ KMLLDYGVYM ARCVPQENRS bmy_06547T0/1-601 LTHSRSSSKG SVEEIVPQPK QKELAGSVRQ KMLLDYSVYM ARCVPQENRS BACU006121/1-1127 LTHSRSSSKG SVEEIMPQPK QKELAGSVRQ KMLLDYSVYM ARCVPQENRS 801 850 ENSP00000258991/1-1134 PQRSPLQSAE SSPTAGKKLP EVPPSEEEEQ EAWVNALLGR IFWDFLGEKY ENSBTAP00000006196/1-1054 PQRSPVQSAE SSPTAGKKLP EVPPSEEEEQ EAWVNALLGR MFWDFLGEKY ENSTTRP00000006631/1-1132 PQRSPVQSAE SSPTAGKKLP EVPPSEEEEQ EAWVNALLGR MFWDFLGEKY bmy_06547T0/1-601 PQRSPAQSAE SSPTAGKKLP EAPPSEEEEL EAWVNALLGR MFWDFLGEKY BACU006121/1-1127 PQRSPAQSAE SSPTAGKKLP EAPPSEEEEQ EAWVNALLGR MFWDFLGEKY 851 900 ENSP00000258991/1-1134 WSDLVSKKIQ MKLSKIKLPY FMNELTLTEL DMGVAVPKIL QAFKPYVDHQ ENSBTAP00000006196/1-1054 WSDLVSKKIQ MKLSKIKLPY FMNELTLTEL DMGVAVPKIL QAFKPYVDHQ ENSTTRP00000006631/1-1132 WSDLVSKKIQ MKLSKIKLPY FMNELTLTEL DMGVAVPKIL QAFKPYVDHQ bmy_06547T0/1-601 WSDLVSKKIQ MKLSKIKLPY FMNELTLTEL DMGVAVPKIL QAFKPYVDHQ BACU006121/1-1127 WSDLVSKKIQ MKLSKIKLPY FMNELTLTEL DMGVAVPKIL QAFKPYVDHQ 901 950 ENSP00000258991/1-1134 GLWIDLEMSY NGSFLMTLET KMNLTKLGKE PLVEALKVGE IGKEGCRPRA ENSBTAP00000006196/1-1054 GLWIDLEMSY NGSFLMTLET KMNLTKLGKE PLVEALKVGE IGKEGCRPRA ENSTTRP00000006631/1-1132 GLWIDLEMSY NGSFLMTLET KMNLTKLGKE PLVEALKVGE IGKEGCRPRA bmy_06547T0/1-601 GLWIDLEMSY NGSFLMTLET KMNLTKLGKE PLVEALKVGE IGKEG--PRA BACU006121/1-1127 GLWIDLEMSY NGSFLMTLET KMNLTKLGKE PLVEALKVGE IGKEGCRPRA 951 1000 ENSP00000258991/1-1134 FCLADSDEES SSAGSSEEDD APEPSGGDKQ LLPGAEGYVG GHRTSKIMRF ENSBTAP00000006196/1-1054 FCLADSDEES SSAGSSDEDD APEPSAGDKP LLPGAEGYVG GHRTSKIMRF ENSTTRP00000006631/1-1132 FCLADSDEES SSAGSSDEDD APEPGAGDKP LLPGAEGYVG GHRTSKIMRF bmy_06547T0/1-601 FCLADSDEES SSAGSSDEDD APEPGTGDKP LLPGAEGYVG GHRTSKIMRF BACU006121/1-1127 FCLADSDEES SSAGSSDEDD APEPGTGDKP LLPGAEGYVG GHRTSKIMRF 1001 1050 ENSP00000258991/1-1134 VDKITKSKYF QKATETEFIK KKIEEVSNTP LLLTVEVQEC RGTLAVNIPP ENSBTAP00000006196/1-1054 VDKITKSKYF QKATETEFIK KKIEEVSNTP LLLTVEVQEC RGTLAVNIPP ENSTTRP00000006631/1-1132 VDKITKSKYF Q-ATETEFI- KKIEEVSNTP LLLTVEVQEC RGTLAVNIPP bmy_06547T0/1-601 VDKITKSKYF QKATETEFIK KKIEEVSNTP LLLTVEVQEC RGTLAVNIPP BACU006121/1-1127 VDKITKSKYF QKATETEFIK KKIEEVSNTP LLLTVEVQEC RGTLAVNIPP 1051 1100 ENSP00000258991/1-1134 PPTDRVWYGF RKPPHVELKA RPKLGEREVT LVHVTDWIEK KLEQEFQKVF ENSBTAP00000006196/1-1054 PATDRIWYEC RRP------- ---------- ---------- ---------- ENSTTRP00000006631/1-1132 PPTDRIWYGF RKPPHIELKA RPKLGEREVT LVHVTDWIEK KLEQEFQKVF bmy_06547T0/1-601 PPTDRIWYGF RKPPHIELKA RPKLGEREVT LVHVTDWIEK KLEQEFQKVF BACU006121/1-1127 PPTDRIWYGF RKPPHIELKA RPKLGEREVT LVHVTDWIEK KLEQEFQKVF 1101 1150 ENSP00000258991/1-1134 VMPNMDDVYI TIMHSAMDPR STSCLLKDPP VEAADQP ENSBTAP00000006196/1-1054 ---------- ---------- ---------- ------- ENSTTRP00000006631/1-1132 VMPNMDDVYI PIMHSAMDPR STSSLLKDPL VEAADQL bmy_06547T0/1-601 VMPNMDDVYI PIMHSAMDPR STSSLLKDPL VEAADQL BACU006121/1-1127 VMPNMDDVYI PIMHSAMDPR STSSLLKDPP LEAADQL