KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:35 2014 Check: 00 .. Name: ENSBTAP00000006197/1-750 Len: 929 Check: 1190 Weight: 1.00 Name: ENSP00000384716/1-778 Len: 929 Check: 93 Weight: 1.00 Name: ENSTTRP00000007707/1-744 Len: 929 Check: 4221 Weight: 1.00 Name: BACU017090/1-571 Len: 929 Check: 6055 Weight: 1.00 Name: bmy_02435T0/1-927 Len: 929 Check: 1971 Weight: 1.00 // 1 50 ENSBTAP00000006197/1-750 MPRSPGTRLK PAKYIPVATA AALLVGSSTL FFVFTCPPGR PAPGPSAPGQ ENSP00000384716/1-778 MPRSPGTRLK PAKYIPVATA AALLVGSSTL FFVFTCPWLT RAVSPAVPVY ENSTTRP00000007707/1-744 ---------- ---------- ---------- -----CPWLT RAVSPAVPVY BACU017090/1-571 MPRSPGTRLK PAKYIPVATA AALLVGSSTL FFVFTCPWLT RAVSPAVPVY bmy_02435T0/1-927 MPRSPGTRLK PAKYIPVATA AALLVGSSTL FFVFTCPWLT RAVSPAVPVY 51 100 ENSBTAP00000006197/1-750 LGVEGGAGAR AVSRCSVLLP GTLPAPPGRA PWPSDHQGPW PALSPVLLGS ENSP00000384716/1-778 NGIIFLFVLA NFSMATFMDP GVFPRADEDE DKEDDFRAPL YKNVDV-RGI ENSTTRP00000007707/1-744 NGILFLFVLA NFSMATFMDP GVFPRADEDE DKEDDFRAPL YKNVDV-RGI BACU017090/1-571 NGILFLFVLA NFSMATFMDP GVFPRADEDE DKEDDFRAPL YKNVDV-RGI bmy_02435T0/1-927 NGILFLFVLA NFSMATFMDP GVFPRADEDE DKEDDFRAPL YKNVDV-RGI 101 150 ENSBTAP00000006197/1-750 TEVVRFCTGS A--RPPRPSG AACTTTCHVW PEEPRCPEAR SCSARGSVGW ENSP00000384716/1-778 QVRMKWCATC HFYRPPRCSH CSVCDNC-VE DFDHHCPWVN NCIGRRNYRY ENSTTRP00000007707/1-744 QVRMKWCATC HFYRPPRCSH CSVCDNC-VE DFDHHCPWVN NCIGRRNYRY BACU017090/1-571 QVRMKWCATC HFYRPPRCSH CSVCDNC-VE DFDHHCPWVN NCIGRRNYRY bmy_02435T0/1-927 QVRMKWCATC HFYRPPRCSH CSVCDNC-VE DFDHHCPWVN NCIGRRNYRY 151 200 ENSBTAP00000006197/1-750 PWLLATLWNP HPAG---WGL LQAQNHAEGL GAAHTTITMA VMCVAGLFFI ENSP00000384716/1-778 FFLFLLSLSA HMVGVVAFGL VYVLNHAEGL GAAHTTITMA VMCVAGLFFI ENSTTRP00000007707/1-744 FFLFLLSLSA HMVGVVAFGL VYVLNHAEGL GAAHTTITMA VMCVAGLFFI BACU017090/1-571 FFLFLLSLSA HMVGVVAFGL VYVLNHAEGL GAAHTTITMA VMCVAGLFFI bmy_02435T0/1-927 FFLFLLSLSA HMVGVVAFGL VYVLNHAEGL GAAHTTITMA VMCVAGLFFI 201 250 ENSBTAP00000006197/1-750 PVVGLTGFHV VLVTRGRTTY EQVTGKFRGG VNPFTRGCYG NVEHVLCSPL ENSP00000384716/1-778 PVIGLTGFHV VLVTRGRTTN EQVTGKFRGG VNPFTRGCCG NVEHVLCSPL ENSTTRP00000007707/1-744 PVIGLTGFHV VLVTRGRTTN EQVTGKFRGG VNPFTRGCYG NVEHVLCSPL BACU017090/1-571 PVIGLTGFHV VLVTRGRTTN EQVTGKFRGG VNPFTRGCYG NVEHVLCSPL bmy_02435T0/1-927 PVIGLTGFHV VLVTRGRTTN EQVTGKFRGG VNPFTRGCYG NVEHVLCSPL 251 300 ENSBTAP00000006197/1-750 APRYVVEPPR LPLAARLKPP FLRPELLERA PPLKVKLSDN GLKAGLGRSK ENSP00000384716/1-778 APRYVVEPPR LPLAVSLKPP FLRPELLDRA APLKVKLSDN GLKAGLGRSK ENSTTRP00000007707/1-744 APRYVVEPPR LPLAARLKPP FLRPELLERA APLKVKLSDN GLKAGLGHSK BACU017090/1-571 APRYVVEPPR LPLAARLKPP FLRPELLERA APLKVKLSDN GLKAGLGHSK bmy_02435T0/1-927 APRYVVEPPR LPLAARLKPP FLRPELLERA APLKVKLSDN GLKAGLGHSK 301 350 ENSBTAP00000006197/1-750 SKGSLDRLDE KPLDLGPPLP PKVEAGTFGS DLQTPRPESA ESALSAQRTS ENSP00000384716/1-778 SKGSLDRLDE KPLDLGPPLP PKIEAGTFSS DLQTPRPGSA ESALSVQRTS ENSTTRP00000007707/1-744 SKGSLDRLDE KPLDLGPPLP PKAEAGTFGS DLQTPRPGSA ESALSAQRTS BACU017090/1-571 SKGSLDRLDE KPLDLGPPLP PKAEAGTFGS DLQTPRPGSA ESALSAQRTS bmy_02435T0/1-927 SKGSLDRLDE KPLDLGPPLP PKAEAGTFGS DLQTPRPGSA ESALSAQRTS 351 400 ENSBTAP00000006197/1-750 PPTPAMYKFR PAFPTGPKAP FCGPAEQVTG TDSLTLGEDS IHSLDFASEP ENSP00000384716/1-778 PPTPAMYKFR PAFPTGPKVP FCGPGEQVPG PDSLTLGDDS IRSLDFVSEP ENSTTRP00000007707/1-744 PPTPAMYKFR PAFPTGTKAP FCGPSEQVTG TDSLTLGEDS IHSLDFASEP BACU017090/1-571 PPTPAMYKFR PAFPAGTKAP FCGPGEQVTG TDSLTLGEDS IHSLDFASEP bmy_02435T0/1-927 PPTPAMYKFR PAFPAGTKAP FCGPGEQVTG TDSLTLGEDS IHSLDFASEP 401 450 ENSBTAP00000006197/1-750 SLDLPDY--- ---------P PLSAADTFSG ALRSLSLKAA SRRGGDHVAL ENSP00000384716/1-778 SLDLPDYGPG GLHAAYPPSP PLSASDAFSG ALRSLSLKAS SRRGGDHVAL ENSTTRP00000007707/1-744 SLDVPDYPPS GLHAAYPPSP PLSAADTFSG ALRSLSLKAA SRRGGDHVAL BACU017090/1-571 SLDVPDYPPS GLHAAYPPSP PLSAADTFSG ALRSLSLKAA SRRGGDHVAL bmy_02435T0/1-927 SLDVPDYPPS GLHAAYPPSP PLSAADTFSG ALRSLSLKAA SRRGGDHVAL 451 500 ENSBTAP00000006197/1-750 QPLRSEGGPP TPHRSLFAPH ALPNRNGSLS YDSLLNPGSP GGHACPAHPA ENSP00000384716/1-778 QPLRSEGGPP TPHRSIFAPH ALPNRNGSLS YDSLLNPGSP GGHACPAHPA ENSTTRP00000007707/1-744 QPLRSEGGPP TPHRGLFAPH ALPNRNGSLS YDSLLNPGSP GGHTCPAHPS BACU017090/1-571 QPLRSE---- ---------- ---------- ---------- ---------- bmy_02435T0/1-927 QPLRSEGGPP TPHRGLFAPH ALPNRNGSLS YDSLLNPGSP GSHTCPAHPS 501 550 ENSBTAP00000006197/1-750 AGAPGYRSPY LHAGAPGDPP RPPPRSFSPV LGPRPREPSP VRYDNLSRTI ENSP00000384716/1-778 VGVAGYHSPY LHPGATGDPP RPLPRSFSPV LGPRPREPSP VRYDNLSRTI ENSTTRP00000007707/1-744 AGAASYRSPY LHAGAAGDPP RPPPRSFSPV LGLRPREPSP VRYDNLSRTI BACU017090/1-571 ---------- ---------- ---------- ---------- ---------- bmy_02435T0/1-927 AGAASYRSPY LHAGAAGDPP RPPPRSFSPV LGLRPREPSP VRYDNLSRTI 551 600 ENSBTAP00000006197/1-750 MASIQERKDR EERERLLRSQ ADSLFGDSGV YDTPSSYSLQ QAGVLSEGPR ENSP00000384716/1-778 MASIQERKDR EERERLLRSQ ADSLFGDSGV YDAPSSYSLQ QASVLSEGPR ENSTTRP00000007707/1-744 MASIQERKDR EERERLLRSQ ADSLFGDSGV YDAPSSYSLQ QASVLSEGPR BACU017090/1-571 ---------- ---------- ---------- ---------- ---------- bmy_02435T0/1-927 MASIQERKDR EERERLLRSQ ADSLFGDSGV YDAPSSYSLQ QASVLSEGPR 601 650 ENSBTAP00000006197/1-750 GLGLRCGSRD DLVAGPGFGG ARNPALQTSL SSLSSAVSRA PRTSSSSLQT ENSP00000384716/1-778 GPALRYGSRD DLVAGPGFGG ARNPALQTSL SSLSSSVSRA PRTSSSSLQA ENSTTRP00000007707/1-744 GPALRCSSRD DLVAGPGFGG ARNPALQASL SSLSSAVSRA PRTSSSSLQA BACU017090/1-571 ---------- ---------- ---------- ---------- ---------- bmy_02435T0/1-927 GPALRCSSRD DLVAGPGFGG ARNPALQASL SSLSSAVSRA PRTSSSSLQA 651 700 ENSBTAP00000006197/1-750 DLASSGGPGV RPTSGPHRSP VHQVPPSPPG TPCSPSYAGP KAVAFIHADL ENSP00000384716/1-778 DQASSNAPGP RPSSGSHRSP ARQGLPSPPG TPHSPSYAGP KAVAFIHTDL ENSTTRP00000007707/1-744 DLANSGAPGA RPASGSHRSP VRQVPPSPPS TPRSPSYVGP KAVAFIQAEL BACU017090/1-571 DLANSGALGA RPASGSHRSP VRQVPPSPPS TPRSPSYVGP KAVAFIQAEL bmy_02435T0/1-927 DLANSGAPGT RPASGSHRSP VRQVPPSPPS TPRSPSYVGP KAVAFIQAEL 701 750 ENSBTAP00000006197/1-750 PEPPPSLAVQ RDHPQLKTPP SKLNGQSPGL TRLGPAPGPP GPSASPARHT ENSP00000384716/1-778 PEPPPSLTVQ R--------- ---------- ---------- ---------- ENSTTRP00000007707/1-744 PEPPPSLSVQ R--------- ---------- ---------- ---------- BACU017090/1-571 PEPPPSLSVQ RDHPQLKTPP SKLNGQSPGL ARLGLATGPP GPSASPARHT bmy_02435T0/1-927 PEPPPSLSVQ RDHPQLKTPP SKLNGQSPGL ARLGPATGPP GPSASPARHT 751 800 ENSBTAP00000006197/1-750 LVKKVSGVGG TTYEISV--- ---------- ---------- ---------- ENSP00000384716/1-778 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007707/1-744 ---------- ---------- ---------- ---------- ---------- BACU017090/1-571 LVKKVSGVGG TTYEISV--- ---------- ---------- ---------- bmy_02435T0/1-927 LVKKVSGVGG TTYEISVRPR GPGSQEQGVP ARAAAARTGT HLPSPLQVSG 801 850 ENSBTAP00000006197/1-750 ---------- ---------- ---------- ---------- ---------- ENSP00000384716/1-778 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007707/1-744 ---------- ---------- ---------- ---------- ---------- BACU017090/1-571 ---------- ---------- ---------- ---------- ---------- bmy_02435T0/1-927 VGASGIHSFS GTGGLGQGLA PRGRPAGPQT LNRAALPLAD LRLSASLSRD 851 900 ENSBTAP00000006197/1-750 ---------- ---------- ---------- ---------- ---------- ENSP00000384716/1-778 -----GRIGT CTRGWGRRGQ PWVPPGLHLC HLGRPEDRPP LRAPWSQAAG ENSTTRP00000007707/1-744 -----GRIGT CSRGWGRRGQ PRVPPGLHLC HLGLPVDRPS LRVPWSPATG BACU017090/1-571 ---------- ---------- ---------- ---------- ---------- bmy_02435T0/1-927 AATRRGRIGT CSRGWGRRGQ PRVPPGLHLC HLGLPVDRPS LRVPWNPATG 901 950 ENSBTAP00000006197/1-750 ---------- ---------- --------- ENSP00000384716/1-778 APPRGAMCRL HLAASSLFPS LSGP----- ENSTTRP00000007707/1-744 APPRGAVCRL HLAASSLFPS LSGPE---- BACU017090/1-571 ---------- ---------- --------- bmy_02435T0/1-927 APPRGAVCRL HLAASSLFPS LSGPERDTK